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* Squashed commit of the following:David Young2020-01-312-14/+21
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | commit ff7a9a34de2fcd78f5d32a1532f3d0e224b20d94 Author: Kimmy Mu <kmu@hdfgroup.org> Date: Wed Jan 29 14:12:18 2020 -0600 Merge pull request #2324 in HDFFV/hdf5 from ~KMU/hdf5:hdf5_1_12 to hdf5_1_12 * commit '781fa57f6ee816e037dd12fff02d37ff7ec9c2b1': pick up missing piece from merge Merge pull request #2311 in HDFFV/hdf5 from ~KMU/hdf5:misc to develop remove redundent definition Merge pull request #2311 in HDFFV/hdf5 from ~KMU/hdf5:misc to develop Merge pull request #2311 in HDFFV/hdf5 from ~KMU/hdf5:misc to develop Merge pull request #2315 in HDFFV/hdf5 from ~KMU/hdf5:develop to develop missing prototype warning prototype issue Merge pull request #2306 in HDFFV/hdf5 from ~KMU/hdf5:develop to develop Merge pull request #2300 in HDFFV/hdf5 from ~KMU/hdf5:squashed_cast to develop Merge pull request #2291 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/uninitialized to develop Merge pull request #2295 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/float to develop Merge pull request #2292 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/prototype to develop Merge pull request #2094 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/unused to develop commit 9f3d808c05d2a3b308f32c958c6671fcac0a432c Author: David Young <dyoung@hdfgroup.org> Date: Wed Jan 29 11:43:55 2020 -0600 testpar/t_2Gio.c: Fix a typo that I think was introduced by a previous warnings PR. An array element was assigned to itself---shape[2]Â =Â shape[2];---instead of being assigned to chunk[2]. fortran/src/H5Pf.c: move conditional compilation controlled by H5_NO_DEPRECATED_SYMBOLS outside of a function for readability. fortran/src/H5match_types.c: put a variable's declaration under the same conditional compilation (H5_FORTRAN_HAVE_C_LONG_DOUBLE) as its use. For now, skip compilation of some unused debug dump routines in the JNI. While I'm in the JNI, delete a set-but-unused variable. src/H5Z.c: condition a variable declaration on H5_NO_DEPRECATED_SYMBOLS so that it's not declared but unused or vice versa. test/cache_common.h: add an #include in to get some symbols we need to avoid implicit declaration warnings. test/dsets.c: use a more conventional conditional-compilation syntax. test/dt_arith.c, test/fillval.c: initialize a bunch of uninitialized variables before use. test/vfd.c: pass the expected type of `void **` to posix_memalign(3) instead of `int **`. testpar/t_bigio.c: explicitly compare with 0 instead of using ! when "equal to 0?" is the question not "is false?" Repair some indentation while I'm here. testpar/testpar.h: repair misaligned line-continuation backslashes in a macro that probably should be a function so that we don't have to fiddle with the line continuation to begin with. tools/src/h5repack/h5repack_main.c: fix some compiler fussing about enums. tools/test/perform/pio_engine.c: the compiler fusses if you cast a function call returning double directly to off_t. It's ok if you cast a variable that's a double to off_t, however. Write and use a new function, sqrto(), to avoid the cast warnings. commit 43a4b80b21c0329fbc1f9a0e2854795189f0bb50 Author: David Young <dyoung@hdfgroup.org> Date: Wed Jan 29 10:47:30 2020 -0600 Reduce casts of HDcalloc()/HDmalloc() that -Wc++-compat required. Reduce gratuitous casts---e.g., (size_t)1. Use the right format string for a pointer. In the H5C sanity checks, change a "size increase" variable from ssize_t (too narrow) to int64_t (wide enough). Parenthesize every appearance of `storage` in the macro `H5D_CHUNK_STORAGE_INDEX_CHK(storage)` so that you can pass in an expression like &sc and it works properly. Disallow re-assignment of the `dset` parameter to H5D__chunk_init() because it helped assure me that it's safe to replace the repeating expression `&dset->shared->layout.storage.u.chunk` with `sc` throughout. Replace lengthy expressions such as `&dset->shared->layout.storage.u.chunk` with `sc` throughout several functions in H5Dchunk.c ISTR that the compiler warned that `sc` was declared but unused in a couple of functions, and then I found that `sc` could be used in many places. Maybe the disused `sc` appeared because a bunch of code was copied and pasted, I don't know. Anyway, it's a lot tighter code now that I use `sc`. In H5D__chunk_update_old_edge_chunks() and H5D__chunk_delete() I actually expand `sc` and another temporary variable, `pline`, because they're used only in !defined(NDEBUG) code. This squashes unused-variable warnings in the defined(NDEBUG) configuration. Don't drop the `volatile` qualification with a cast in tools/src/h5import/h5import.c. commit 035bfa0769a4012881fc659b673bacf44d146537 Author: David Young <dyoung@hdfgroup.org> Date: Tue Jan 28 20:35:28 2020 -0600 Reduce differences between my -Werror branch and `develop`: Rename index -> idx, fileno -> fnumber, fileno -> fno to avoid GCC shadowed declaration warnings about index(3). Convert #pragma GCC diagnostic push/pop/ignored to the HDF5 library's H5_GCC_DIAG_OFF()/H5_GCC_DIAG_ON() macros.
* Introduce new H5VL _by_value routinesJordan Henderson2020-01-292-9/+93
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* Squashed commit of the token_refactoring branch:Dana Robinson2020-01-1915-327/+462
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* Make wrappers, tests and tools use H5Treclaim() instead of H5Dvlen_reclaim()Jerome Soumagne2019-10-081-8/+8
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* Reverts the removal of config/conclude_fc.am while keepingDana Robinson2019-08-011-1/+1
| | | | the changes to config/gnu-fflags.
* Merge pull request #1808 in HDFFV/hdf5 from ↵Dana Robinson2019-07-291-1/+1
|\ | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:gnu-flags-work to develop * commit '7d291d059da6287f769951c4854c566da0b93ce8': Parallel Fortran tests now use the MPI module instead of including mpif.h. First stab at gfortran versions. Tested on gfortran 7-9 so far. Moved the -std=f2008 option to gfortran 9 for now. Updated gfortran options. * Removed conclude_fc.am, which was causing verbose builds. Need to investigate more, though. * Added gfortran 9 warnings and flags. This will need to be separated into other version blocks based on when the options first appeared. * The standard is now explicitly set at 2008.
| * Updated gfortran options.Dana Robinson2019-07-171-1/+1
| | | | | | | | | | | | | | | | * Removed conclude_fc.am, which was causing verbose builds. Need to investigate more, though. * Added gfortran 9 warnings and flags. This will need to be separated into other version blocks based on when the options first appeared. * The standard is now explicitly set at 2008.
* | HDFFV-10845 add_custom_command requires emulatorAllen Byrne2019-07-171-4/+4
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* | Correct install syntaxAllen Byrne2019-07-171-7/+21
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* | HDFFV-10845 fix configure check and PATHsAllen Byrne2019-07-171-1/+1
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* Fix packaging issueAllen Byrne2019-07-111-2/+7
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* HDFFV-10581 fix locations for static pdb filesAllen Byrne2019-07-081-2/+2
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* Updated configure & CMake compiler flags for GCC 8.x, along with correspondingQuincey Koziol2019-06-282-8/+7
| | | | | changes to warnhist script (and some extra improvements for condensing C++ and Java warnings), and fixed a bunch of warnings.
* Add support for GCC 7.x warnings, update warnhist script to account for them,Quincey Koziol2019-06-212-2/+0
| | | | clean up warnings.
* Add missing fortran modsAllen Byrne2019-06-191-0/+2
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* HDFFV-10616 add h5fc scriptAllen Byrne2019-06-191-0/+50
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* Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-06-183-0/+466
|\ | | | | | | | | | | | | | | * commit '712a2a13d8add828d053135a172abb2e819d59ad': Fixed a warning in H5CX.c concerning incorrect use of freeing VOL connector info. Add H5S_SEL_ITER_SHARE_WITH_DATASPACE selection iterator creation flag, to share dataspace's selection with iterator (and with caution about not modifying or closing the dataspace while the iterator is open). Fix misc. typos, etc. from code review New hyperslab selection routines and new public selection iterator routines.
| * New hyperslab selection routines and new public selection iterator routines.Quincey Koziol2019-06-163-0/+466
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* | HDFFV-10805 Add option to only build shared targetsAllen Byrne2019-06-181-116/+132
|/ | | | | HDFFV-10805 Add ONLY_SHARED_LIBS option and prefer shared over static HDFFV-10803 Update FindSZIP.cmake find module Remove unneeded modules and update java modules
* fixed invalid pointerM. Scot Breitenfeld2019-06-131-1/+2
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* move the vol_info to an optional parameterM. Scot Breitenfeld2019-06-111-7/+14
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* added H5Pset_volM. Scot Breitenfeld2019-05-222-0/+87
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* removed H5VL constantsM. Scot Breitenfeld2019-05-164-293/+3
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* removed VOLL NULL connector and replaced it with native VOLM. Scot Breitenfeld2019-05-162-52/+10
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* added connector_name testM. Scot Breitenfeld2019-04-241-1/+1
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* Merge branch 'develop' into H10621M. Scot Breitenfeld2019-04-246-7/+88
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| * Fix fortran omissionAllen Byrne2019-04-151-0/+1
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| * Add C++, Java, and FORTRAN wrappers and tests for H5Fget_filenoQuincey Koziol2019-04-143-0/+73
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| * HDFFV-10365: Changes as described in the RFC: H5Sencode/H5Sdecode Format Change.Vailin Choi2019-04-063-7/+14
| | | | | | | | This also addresses HDFFV-10255: H5Sencode/decode performance issue.
* | added more testsM. Scot Breitenfeld2019-03-114-78/+93
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* | Merge branch 'develop' into H10621M. Scot Breitenfeld2019-03-0713-521/+418
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| * More changes to align with incoming selection improvements.Quincey Koziol2019-02-143-468/+0
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| * Remove F2003 Option and referencesAllen Byrne2019-02-061-5/+1
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| * fixed 8 byte integer issueM. Scot Breitenfeld2019-01-091-1/+10
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| * fix for xlf compilerM. Scot Breitenfeld2019-01-091-1/+2
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| * replaced uintScot Breitenfeld2019-01-091-5/+5
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| * Merge pull request #1409 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:J10443 to developScot Breitenfeld2019-01-088-47/+220
| |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'b4d4d371a03158c39f120b1bde6c4bd51f1b2eb6': HDFFV-10443: Add "field" parameter to H5Oinfo* and H5Ovisit* APIs. Added chunked dataset, H5S_ALL test typo typo updated defined constants Documented HDFFV-10652 HDFFV-10652 Implemented a process-0 read and then broadcast for collective read of full datasets (H5S_ALL) by all the processes in the file communicator. Removed reason for breaking read-proc0-and-bcast switched to using CX instead of a global var. HDFFV-10652 Implemented a process-0 read and then broadcast for collective read of full datasets (H5S_ALL) by all the processes in the file communicator.
| | * HDFFV-10443: Add "field" parameter to H5Oinfo* and H5Ovisit* APIs.Scot Breitenfeld2019-01-088-47/+220
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| * | Fortran wrappers for dataset obj header minimization API calls.Dana Robinson2019-01-083-1/+187
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* | added missing filesScot Breitenfeld2018-12-071-0/+340
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* | Implemented VOL APIs and C constants, no testsScot Breitenfeld2018-12-071-3/+7
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* | Implemented VOL APIs and C constants, no testsScot Breitenfeld2018-12-075-26/+353
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* | initial API impl.Scot Breitenfeld2018-12-073-1/+8
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* fixed sp.M. Scot Breitenfeld2018-11-091-1/+1
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* HDFFV-10511 -- Make fortran specific subroutines names PRIVATEM. Scot Breitenfeld2018-11-096-44/+178
| | | | Made non-public APIs private.
* TRILABS-34 add batch option. Also fix cmakedefine01 usageAllen Byrne2018-10-111-1/+1
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* VOL FEATUREDana Robinson2018-10-104-61/+87
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* Fix defines for XL compilerAllen Byrne2018-10-031-17/+19
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* HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does ↵M. Scot Breitenfeld2018-06-082-6/+6
| | | | | | not work properly misc. clean-up
* HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F ↵M. Scot Breitenfeld2018-06-081-1/+1
| | | | | | does not work properly added dependency on H5ff.F90 for H5_ff.F90
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