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* Initial preparation of hdf5-1_11_3 release branch for HDF5 1.12.3 ↵Larry Knox2023-10-231-0/+1789
| | | | release:\nUpdated configure.ac for release: switched configure default to production mode and disabled maintainer mode.\nSet HDF5_GENERATE_HEADERS to OFF in src/CMakeLists.txt.\n Generated release files including Makefile.ins with autogen.sh, autoconf 2.71 and automake 1.16.2.\nIncremented version to 1.12.3-2. (#3756)
* Merge/update CMake, presets,java and tools (#3393)Allen Byrne2023-08-212-3/+24
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* Move config/cmake_ext_mod content to config/cmake (#3062)Dana Robinson2023-06-071-4/+4
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* Fix CMake generator expression syntax (#2940)Allen Byrne2023-05-121-12/+12
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* Update Copyright headers. (#2534)Larry Knox2023-03-1337-37/+0
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* Fix new codespell issues (#2521) (#2530)Larry Knox2023-03-101-1/+1
| | | | | | | | | | | | | * Fix new codespell issues (#2521) * Fix new codespell issues * Have codespell ignore ./config/sanitizer/sanitizers.cmake * Fix typo in genparser. --------- Co-authored-by: Mark Kittisopikul <mkitti@users.noreply.github.com>
* Spelling fixes for codespell (#2038)Dana Robinson2022-08-181-21/+21
| | | | | | | * Spelling fixes for codespell * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Merge branch 'hdf5_1_12' into spelling-correctionsLarry Knox2022-04-073-15/+42
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| * Normalize Fortran code with develop (#1600)Dana Robinson2022-04-0716-65/+92
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* | Commit codespell spelling corrections.Larry Knox2022-04-0717-57/+57
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* October 2021 Pull Requests not previously merged to 1.12 (#1570)Larry Knox2022-04-011-2/+2
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* Rework of PR #826 (#972) (#978)Larry Knox2021-08-312-1/+125
| | | | | | | | * H5Fget_name_f fixed to handle correctly trailing whitespaces and newly allocated buffers. Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Scot Breitenfeld <brtnfld@hdfgroup.org> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Fixed failure on BE with xlf (#968) (#975)Larry Knox2021-08-311-2/+5
| | | | | | | | | | * Committing clang-format changes * Fixed seg fault with xlf on BE with -qintsize=8 Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Scot Breitenfeld <brtnfld@hdfgroup.org> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Hdf5 1 12 merge cmake ninja and java refs (#698)Allen Byrne2021-05-291-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * Merge CMake and java refs from dev Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Hdf5 1 12 merge changes (#604)Allen Byrne2021-04-281-7/+7
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Update URL in source file Copyright headers for web copy of COPYINGLarry Knox2021-02-2038-39/+39
| | | | file - files not in src or test.
* Manual sync with develop (#95)Dana Robinson2020-11-172-0/+77
| | | | Brings all features from develop. Note that RELEASE.txt has not been updated (will be done in a future PR).
* OESS-98 add CMake option to build plugins project within hdf5Allen Byrne2020-10-161-3/+3
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* Merge changes from developAllen Byrne2020-10-081-1/+1
| | | | | Comments and whitespace Skip file-locking and cache changes
* Source formattedAllen Byrne2020-10-012-68/+64
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* Add clang-format changes from develop.Allen Byrne2020-09-281-2/+13
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* Sync with developDana Robinson2020-08-0127-1637/+1637
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* Whitespace cleanupAllen Byrne2020-05-121-1/+1
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* TRILAB-192 - merge changes from developAllen Byrne2020-04-071-170/+60
| | | | Single source, config files, for warnings for both autotools and CMake. Update CMake libraries, tools, tests to use correct flags.
* Merge changes from develop mostly cmake 3.12 minimum versionAllen Byrne2020-02-231-1/+1
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* HDFFV-11018 Add Fortran H5F_LIBVER_V*_F definitionsM. Scot Breitenfeld2020-02-111-2/+33
| | | | | | | | | | | | | | | | | | Added ------ New Definitions: INTEGER :: H5F_LIBVER_ERROR_F INTEGER :: H5F_LIBVER_NBOUNDS_F INTEGER :: H5F_LIBVER_V18_F INTEGER :: H5F_LIBVER_V110_F INTEGER :: H5F_LIBVER_V112_F New API: h5pget_libver_bounds_f(fapl_id, low, high, hdferr) Removed: call to C wrapper h5pset_libver_bounds_c in h5pset_libver_bounds_f
* HDFFV-11012 fix fortran include propertiesAllen Byrne2020-02-051-2/+2
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* Introduce new H5VL _by_value routinesJordan Henderson2020-01-291-22/+22
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* Improved CMake options for testsAllen Byrne2020-01-191-1/+3
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* Squashed commit of the token_refactoring branch:Dana Robinson2020-01-193-159/+61
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* Cherry pick of 0225e6d5969Quincey Koziol2020-01-042-9/+9
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* Merge pull request #1826 in HDFFV/hdf5 from ↵Dana Robinson2019-08-011-1/+1
|\ | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:develop_minor_pr to develop * commit '4227b8948d7091205b4f8dc1271d7dcae01bb0fb': Reverts the removal of config/conclude_fc.am while keeping the changes to config/gnu-fflags. Fixed a couple of typos.
| * Reverts the removal of config/conclude_fc.am while keepingDana Robinson2019-08-011-1/+1
| | | | | | | | the changes to config/gnu-fflags.
* | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-07-291-1/+1
|\ \ | |/ | | | | | | | | | | | | * commit 'd169391529f253a9903b8e6cacf38c59ceefab07': Parallel Fortran tests now use the MPI module instead of including mpif.h. First stab at gfortran versions. Tested on gfortran 7-9 so far. Moved the -std=f2008 option to gfortran 9 for now. Updated gfortran options. * Removed conclude_fc.am, which was causing verbose builds. Need to investigate more, though. * Added gfortran 9 warnings and flags. This will need to be separated into other version blocks based on when the options first appeared. * The standard is now explicitly set at 2008.
| * Merge pull request #1808 in HDFFV/hdf5 from ↵Dana Robinson2019-07-291-1/+1
| |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:gnu-flags-work to develop * commit '7d291d059da6287f769951c4854c566da0b93ce8': Parallel Fortran tests now use the MPI module instead of including mpif.h. First stab at gfortran versions. Tested on gfortran 7-9 so far. Moved the -std=f2008 option to gfortran 9 for now. Updated gfortran options. * Removed conclude_fc.am, which was causing verbose builds. Need to investigate more, though. * Added gfortran 9 warnings and flags. This will need to be separated into other version blocks based on when the options first appeared. * The standard is now explicitly set at 2008.
| | * Updated gfortran options.Dana Robinson2019-07-171-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | * Removed conclude_fc.am, which was causing verbose builds. Need to investigate more, though. * Added gfortran 9 warnings and flags. This will need to be separated into other version blocks based on when the options first appeared. * The standard is now explicitly set at 2008.
* | | HDFFV-10529 Update CMake tests to use test fixturesAllen Byrne2019-07-231-15/+32
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* | HDFFV-10845 use of TARGETFILE disables auto emulatorAllen Byrne2019-07-171-6/+10
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* | HDFFV-10845 add_custom_command requires emulatorAllen Byrne2019-07-171-2/+2
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* Updated configure & CMake compiler flags for GCC 8.x, along with correspondingQuincey Koziol2019-06-281-1/+0
| | | | | changes to warnhist script (and some extra improvements for condensing C++ and Java warnings), and fixed a bunch of warnings.
* Fix fortran test and test library linkingAllen Byrne2019-06-231-6/+6
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* Add support for GCC 7.x warnings, update warnhist script to account for them,Quincey Koziol2019-06-211-2/+0
| | | | clean up warnings.
* Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-06-191-26/+28
|\ | | | | | | | | * commit 'b9ec6a6400a556b1250c249e158c4fffafccd550': fixed pass_through vol
| * Merge pull request #1746 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:develop to developScot Breitenfeld2019-06-191-26/+28
| |\ | | | | | | | | | | | | * commit 'a67c578e4b9275fa12b427b6e13021536838a448': fixed pass_through vol
| | * fixed pass_through volM. Scot Breitenfeld2019-06-181-26/+28
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* | | Cleanup possible CMake target conflictsAllen Byrne2019-06-191-5/+4
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* | HDFFV-10805 Add option to only build shared targetsAllen Byrne2019-06-182-487/+238
|/ | | | | HDFFV-10805 Add ONLY_SHARED_LIBS option and prefer shared over static HDFFV-10803 Update FindSZIP.cmake find module Remove unneeded modules and update java modules
* fixed linked library for testingM. Scot Breitenfeld2019-06-141-1/+1
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* added missing MOD dependencyM. Scot Breitenfeld2019-06-143-7/+5
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* added missing MOD dependencyM. Scot Breitenfeld2019-06-141-2/+0
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