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* [svn-r18793] Add files to support building library with CMakeAllen Byrne2010-05-131-0/+175
| | | | Tested: Local linux
* [svn-r18709] Purpose:Mike McGreevy2010-05-051-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | Improve configure's large-file support control. Description: Modified configure to now attempt to add defines necessary for supporting largefiles on all systems, instead of solely on linux. This is in response to user requests to enable largefile support on Solaris by default, as well as to give extra control on AIX (instead of just jamming the necessary flag into the config files). The old --enable-linux-lfs flag has been removed in favor of the --enable-largefile flag (enabled by default), which can be used on all platforms. On systems where large files cannot be supported in this manner, configure will report as such. Tested: h5committest AIX (NCSA's blue_print machine) duty, liberty, and linew.
* [svn-r18579] Purpose:Mike McGreevy2010-04-151-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Autotool Upgrade / Libtool Bug Fix Description: Updated autotools referenced in bin/reconfigure as follows: Autoconf 2.64 --> Autoconf 2.65 Automake 1.11 --> Automake 1.11.1 Libtool 2.2.6a --> Libtool 2.2.6b-mcg The referenced libtool version is a custom version of 2.2.6b. It has been tweaked to fix a bug in libtool that occurs when using PGI 10.0 compilers. A check incorrectly categorizes the C++ compiler as version 1.0 instead of 10.0, and the link line is subsequently set up incorrectly and fails to compile. A patch has been made available and will be included in the next release of libtool, but in the meantime I've applied the patch to a custom installation as indicated above. This bin/reconfigure now references the custom installation, and the resulting configure script will correctly categorize the PGI 10.0 C++ compiler. Ran bin/reconfigure to regenerate configure and makefiles. Tested: jam and amani with PGI 10.0 compilers. h5committest
* [svn-r18197] Description:Quincey Koziol2010-01-3022-1279/+1279
| | | | | | | | | Trim trailing whitespace from source code files with this command: find . \( -name "*.[ch]" -or -name "*.cpp" -or -name "*.f90" \) -print |xargs -n 1 sed -i "" 's/[[:blank:]]*$//' Tested on: None - eyeballed only
* [svn-r18157] Description:Quincey Koziol2010-01-231-20/+17
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring back changes from Coverity session on 1/15/10: r18111: Fix Coverity issue #130: make certain that the cache gets freed on error. r18112: Fix Coverity issue #43 by making cache testing calls protected by 'pass' variable. r18113: Fix Coverity issue #129 by releasing the cache on error. r18115: Coverity #45 fix: patched an error check in H5Screate_simple to prevent future dereferencing of a NULL point. Added a verification in test/th5s.c. r18116: Fix Coverity issue #43 by releasing cache on error. r18117: Coverity #362,363 by adding HGOTO_DONE, freeing allocations and associated changes. REsolving coverity results #364-368, 369, 370-372, 377, 379, and 380. r18118: Fix Coverity issue #42: assert that cache & test specification pointer are valid. r18122: Coverity #362,363 by adding HGOTO_DONE and freeing allocations. This also takes care of #357,358. r18123: Coverity #359-361, 373-376: Added HGOTO_DONE(FAIL) statement after checking allocation for NULL. Verified allocation is freed in done block. r18128: Fixed coverity issue #10 -- removed dead code. Tested on: Mac OS X/32 10.6.2 (amazon)
* [svn-r18107] bug 1673:Albert Cheng2010-01-121-4/+4
| | | | | | | | | | | | | | The mixed use of RUNTEST (original) and RUNTESTS (new) caused confusion. E.g., the timings in test/ was still using the old $RUNTEST. It made more sense to use $RUNTEST which is used by the dejagnu feature of automake. So, I changed all $RUNTEST or $RUNTESTS to $RUNEXEC. config/commence.am & config/conclude.am are the two files that got changes. Also fixed an error in test/Makefile.am. The rest are changed by bin/reconfigure. Tested: h5committested.
* [svn-r18098] Description:Scot Breitenfeld2010-01-081-14/+14
| | | | | | | | | | | | | Changed the link type definitions to match the changes made in the source. - ! H5L_LINK_SOFT_F - Soft link - ! H5L_LINK_EXTERNAL_F - External link - ! H5L_LINK_ERROR _F - Error + ! H5L_TYPE_HARD_F - Hard link + ! H5L_TYPE_SOFT_F - Soft link + ! H5L_TYPE_EXTERNAL_F - External link + ! H5L_TYPE_ERROR _F - Error Tested: jam (intel)
* [svn-r17616] Purpose:Mike McGreevy2009-10-082-17/+24
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | CFLAGS overhaul Description: Modified the way configure handles CFLAGS. (note: all changes also apply to FCFLAGS, CXXFLAGS, CPPFLAGS, and LDFLAGS). 1. The configure process will now always preserve a user's CFLAGS environment variable setup. Any additional flags necessary for compilation added at configure time will be passed into the Makefiles as AM_CFLAGS, which is an automake construct to be used in addition to CFLAGS. This will allow a user to have the final say, as CFLAGS will always appear later in the compile line than AM_CFLAGS. Additionally, setting CFLAGS during make will no longer completely erase all flags set by configure, since they're maintained in AM_CFLAGS. 2. Additionally, where possible, flags previously being assigned directly into CFLAGS (and thus propagating into h5cc) have now been redirected into H5_CFLAGS, so they're used ONLY for compiling hdf5, and not embedded into the h5cc wrapper script as well. *Note that H5_CFLAGS ultimately is assigned into AM_CFLAGS for use in the Makefiles. Complete description of changes and build process will be included in a Configure Document that Elena and I are working on. 3. Removed unsupported config files. This includes: config/dec-osf* config/hpux11.00 config/irix5.x config/powerpc-ibm-aix4.x config/rs6000-ibm-aix5.x config/unicos* 4. Modified configure summary to display additional values. Specifically, appropriate AM_* variables are being shown, as well as H5_FCFLAGS and H5_CXXFLAGS, which were for some reason not already present. Tested: - H5committest - Tested on all THG / NCSA machines, using several combinations of the more prominent configure options (c++, fortran, szip, threadsafe, parallel, et cetera). (Thanks to Quincey for rysnc testing setup!) - With regards to new automated testing, anything *necessary* for compilation will be caught by the daily tests as it stands now. (i.e., if LDFLAGS is not properly set when szip is used, linking will fail). Additionally, with regards to which flags get into h5cc, if any *necessary* flags have been improperly removed, then daily tests should fail during make installcheck. Additional machine-specific desired behaviors and/or checks may have to be set up separately within the daily tests, so this is something to work on.
* [svn-r17482] Scot Breitenfeld2009-09-151-14/+61
| | | | | | | | | | | | | | | Bug 1652 - h5lget_info_by_idx_f missing/broken functionalit * added returned val_sel, link_type and address that were missing In the process, fixed the integer type in H5lget_info_f for address and val_sel * wrote test for val_sel, address, and link_type returned values * to check address values added h5Oopen_by_addr_f function and test program. Tested: smirom (pgf90/pgcc, ifort/icc) linew jam (gcc/g95)
* [svn-r17345] Purpose:Mike McGreevy2009-08-121-66/+100
| | | | | | | | | | | | | | | | | | | | | | | | Updating autotools Description: Installed new autotools and used them to reconfigure HDF5. - Automake upgraded to 1.11 - Autoconf upgraded to 2.64 - bin/reconfigure script edited to use new versions (on jam), and run to generate new configure script and Makefile.in's. - configure.in script edited to add "_cv_" to all AC_CACHE_VAL strings (in order to comply with new autoconf standard). Tested: Tested on machines jam, smirom, liberty, linew. Tested w/ features c++, fortran, parallel. Tested w/ compilers gcc, pgcc, icc. Further testing via Daily Tests should catch any other outliers. Upon passing DT's, I'll propogate the new tools into 1.8, hdf4, et cetera.
* [svn-r17222] Description:Scot Breitenfeld2009-07-223-5/+4
| | | | | | Added filename argument to file_space routine to avoid conflicts of the files when running fortranlib_test_1_8.f90 and fortranlib_test.f90 at the same time (i.e. when running the tests in parallel). tested: smirom (ifort, pgf90, g95, gfortran), linew
* [svn-r16797] Changed Scot Breitenfeld2009-04-202-3/+5
| | | | | | | | | | | | | | H5D_CHUNK_CACHE_NSLOTS_DEFAULT_F H5D_CHUNK_CACHE_NBYTES_DEFAULT_F H5D_CHUNK_CACHE_W0_DEFAULT_F to H5D_CHUNK_CACHE_NSLOTS_DFLT_F H5D_CHUNK_CACHE_NBYTES_DFLT_F H5D_CHUNK_CACHE_W0_DFLT_F to get under the 31 limit for variable names
* [svn-r16792] Description:Mike McGreevy2009-04-201-4/+4
| | | | | | | | | | | | - Updated bin/reconfigure to use latest version of automake (1.10.2). Re-generated Makefile.in's by running bin/reconfigure. - Added libtool version numbers to c++, fortran, hl, hl c++, and hl fortran libraries. Tested: jam, liberty, smirom
* [svn-r16780] Description:Scot Breitenfeld2009-04-173-4/+300
| | | | | | | | | | | | | | | Added tests for the new APIs: H5D_H5DGET_ACCESS_PLIST_F H5I_H5IIS_VALID_F H5P_H5PSET_CHUNK_CACHE_F H5P_H5PGET_CHUNK_CACHE_F Platforms tested: smirom: pgf90, ifort linew liberty: gcc43, gfortran43, gcc44, gfortran44
* [svn-r16561] Purpose:Mike McGreevy2009-03-101-3/+3
| | | | | | | | | | | | | | | | | | Bug Fix Description: Fixing BZ #1381. The --includedir=DIR configure option, which is used to specify the installation location of C header files, did not work correctly as the path was hard-coded in config/commence.am. I'm presuming this is because an older version of automake didn't know where to put c header files. In any case, removing this line now defaults the includedir to the same directory that it is currently hard-coded to, and also fixes the configure flag to allow customization of this value. Tested: jam, liberty
* [svn-r16518] have 2 expected outputs for 2 h5ls runs depending if run on a ↵Pedro Vicente Nunes2009-02-261-0/+1
| | | | | | | big or little endian machine. Configure.in was modified to export a variable carrying endianess information to testh5ls.sh. This script then compares the current run with 2 expected outputs, one for a big-endian machine (linew was used to generate the output), other for little endian (jam was used to generate the output) the way h5ls prints types, it starts searching for NATIVE types first. One solution would be h5ls not to detect these native types, using for example the same print datatype function that h5dump does, that would make the output look the same on all platforms ("32-bit little-endian integer" would be printed instead). Drawback, this "native" information would not be available. Other solution is to have not one but 2 expected outputs and make the shell script detect the endianess and compare with one output or other tested: h5committest
* [svn-r16235] Description:Scot Breitenfeld2008-12-301-2/+0
| | | | | | | Cosmetic changes, Also tested -r16231 on: Jam (intel 10.1) Smirom (intel 10.1)
* [svn-r16231] Description:Scot Breitenfeld2008-12-301-1/+4
| | | | Added chunk property to the data set because changes in the cC function H5Dset_extent now require/check that the data set is chunked.
* [svn-r15942] Purpose: Bug Fixes and Libtool UpgradeMike McGreevy2008-10-241-6/+6
| | | | | | | | | | | | | | | | | | Description: - Remove need to set LD_LIBRARY_PATH when using shared szip library. - Libtool 2.2.6a is now used to generate libraries. - 'make check install' dependency bug is fixed, and should no longer break the build. - removed hard coding of shell in config/commence.am, as this causes problems on Solaris with the new version of libtool. - RELEASE.txt with appropriate changes. Tested: - kagiso, smirom, linew (merged from 1.8, pretty quick tests)
* [svn-r15749] Description:Scot Breitenfeld2008-10-012-4/+3
| | | | Removed blank lines
* [svn-r15737] Description:Scot Breitenfeld2008-09-308-19/+123
| | | | | Changed the tests so that the *.h5 test files are removed depending on the HDF5_NOCLEANUP environment variable. bug 696
* [svn-r15704] I changed the return values of H5Fget_obj_ids and ↵Raymond Lu2008-09-261-1/+1
| | | | | | | | H5Fget_obj_count to ssize_t and modified C++ and Fortran API functions. This is for bug #1245. Tested on smirom, linew, and kagiso.
* [svn-r15696] Description:Scot Breitenfeld2008-09-251-5/+7
| | | | Fix for test of H5Tget_native_type_f
* [svn-r15693] Description:Scot Breitenfeld2008-09-242-30/+58
| | | | Added test for h5tget_native_type_f
* [svn-r15692] Description:Scot Breitenfeld2008-09-241-16/+20
| | | | Added the optional 'mounted' variable to H5Gget_info_by_idx_f/H5Gget_info_f/H5Gget_info_by_name_f to see that it passes the correct values.
* [svn-r15689] Description:Scot Breitenfeld2008-09-242-6/+224
| | | | Added additional tests for h5sget_select_bounds_f
* [svn-r15688] Description:Scot Breitenfeld2008-09-232-1/+756
| | | | | Added additional tests for h5sget_select_hyper_blocklist_f and 5sget_select_elem_pointlist_f
* [svn-r15633] Description:Scot Breitenfeld2008-09-162-1/+205
| | | | Added test routines for h5t_get/set_fields_f.
* [svn-r15423] Description:Scot Breitenfeld2008-07-291-1/+1
| | | | Fix the error of passing an array to a scalar.
* [svn-r15420] Description:Scot Breitenfeld2008-07-281-1/+1
| | | | | | | | Initialized a string with a space instead of a blank i.e. var = '' is now var = ' ' This fixes a problem with AIX for bug 1252
* [svn-r15417] Description:Scot Breitenfeld2008-07-281-4/+4
| | | | | | | Changed the INTENT for total_error to be consistantly INTENT(INOUT) as noted in bug 1251
* [svn-r15110] Description:Scot Breitenfeld2008-05-301-3/+1
| | | | | | Changed the error output formatting so that the test status writes to standard out looks correct when using the sun compiler (it did not correctly tab the output).
* [svn-r15075] Description: removed temporary files created by test programs.Scot Breitenfeld2008-05-271-1/+7
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* [svn-r15074] Maintenance: This check-in should fix daily tests failures:Elena Pourmal2008-05-277-102/+25
| | | | | | | | Uninstall target had non-existant file to remove; error_handler module triggered a race condition for parallel make with Intel and PGI compilers, therefore we removed the module and created a subroutine instead. Platforms tested: kagiso with GNU, Intel and PGI compilers.
* [svn-r15070] Description:Scot Breitenfeld2008-05-232-4/+4
| | | | fixed typo (minor fix)
* [svn-r15069] Purpose:Scot Breitenfeld2008-05-232-16/+69
| | | | | | | | Added code to remove module files when make clean Description: The module files were not being removed when make clean and caused compiling errors. fixed.
* [svn-r15067] Maintenance: Daily tests failed on several platforms due to the ↵Elena Pourmal2008-05-222-8/+8
| | | | | | | broken dependencies when srcdir and parallel make are used; fixed (I hope) Platforms tested: kagiso with srcdir and parallel make; pgcc and pgf90 -i8 compilers
* [svn-r15065] Description:Scot Breitenfeld2008-05-213-49/+80
| | | | | | Broke-up longer lines over multiple lines Removed unused variables.
* [svn-r15054] Purpose:Scot Breitenfeld2008-05-217-336/+341
| | | | | | | | | | | | Made reporting of the test status global by handling the output via a module. Cleaned-up output to the terminal. Description: Put writing the test status as a call to a subroutine instead of on a per account basis. Added the dependency of compiling in the correct order in the Makefiles for use of the Module.
* [svn-r15036] Bug fix.Albert Cheng2008-05-192-9/+10
| | | | | | | | | | | | | | | | | | | Description: The fortran Makefile.am used HDF_FORTRAN to indicate it is part of the Fortran API source so that conclude.am will give fortran api prefix in the test output. The symbox HDF_FORTRAN is also used in configure for a different purpose (indicated --enable-fortran). They conflicted. Similar problem for the symbol HDF_CXX. Solution: Changed all the involved Makefile.am to use "FORTRAN_API" instead. It is a more appropriate name. Same for CXX_API. Along the way, discovered that the Makefile.am of hl/fortran/test and hl/cxx/test did not have those symbols at all. Added them in. Platform tested: Kagiso only. It is a trivia change.
* [svn-r15025] Purpose:Scot Breitenfeld2008-05-164-1934/+149
| | | | | | | Cleaned up unused code (i.e. commented out) and removed extraneous output to standard out. Tested: N/A - No critical executable source lines were modified, only comments and write statements.
* [svn-r15007] Purpose: configure cleanupMike McGreevy2008-05-151-1/+0
| | | | | | | Description: cleaning up configure related to removal of --disable-hsizet flag, which we no longer support. Tested: kagiso
* [svn-r15003] Purpose:Albert Cheng2008-05-151-4/+18
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Improvement. Description: src/libhdf5.settings was the initial configure summary and is installed. Then configure is changed to dump a summary of the configure settings to the output and also append it to src/libhdf5.settings. That created two different output formats and duplicated information. This is the initial attempt to clean up this confusion and unify the output format. It is decided to use the src/libhdf5.settings template as the unified means. This requires more macros symbols be defined. The following symbols are all related to generating the src/libhdf5.settings file. AC_SUBST(EXTERNAL_FILTERS) AC_SUBST(MPE) MPE=no AC_SUBST(STATIC_EXEC) STATIC_EXEC=no AC_SUBST(HDF_FORTRAN) HDF_FORTRAN=no AC_SUBST(FC) HDF_FORTRAN=no AC_SUBST(HDF_CXX) HDF_CXX=no AC_SUBST(CXX) HDF_CXX=no AC_SUBST(HDF5_HL) HDF5_HL=yes AC_SUBST(GPFS) GPFS=no AC_SUBST(LINUX_LFS) LINUX_LFS=no AC_SUBST(INSTRUMENT) INSTRUMENT=no AC_SUBST(CODESTACK) CODESTACK=no AC_SUBST(HAVE_DMALLOC) HAVE_DMALLOC=no AC_SUBST(DIRECT_VFD) DIRECT_VFD=no AC_SUBST(THREADSAFE) THREADSAFE=no AC_SUBST(STATIC_SHARED) AC_SUBST(enable_shared) AC_SUBST(enable_static) AC_SUBST(UNAME_INFO) UNAME_INFO=`uname -a` The src/libhdf5.settings.in has CONDITIONAL's added to it too. The untrue conditions turned into a "#" and these lines are cleaned by the post processing script. Platform tested: h5committest on kagiso, smirom and linew.
* [svn-r14997] Purpose:Scot Breitenfeld2008-05-141-33/+1
| | | | Cleaned up get_name_by_idx_f test that uses the newest API.
* [svn-r14996] Purpose:Scot Breitenfeld2008-05-142-17/+44
| | | | Updated the call using the new interface for the get_name_by_idx_f routine
* [svn-r14991] Maintenance: Fixed some bugs discovered by daily testing and by ↵Elena Pourmal2008-05-134-10/+12
| | | | | | | | manual testing using -i8 flag Platforms tested: linew (as for daily tests), icc and pgf90 with -i8 on kagiso; g95 has the problem with -i8 (will be looking into the problem)
* [svn-r14987] Purpose:Scot Breitenfeld2008-05-131-8/+8
| | | | | | | | Fixed the validation problem with H5Aget_info_f Desciption: Recast the interger type passed into 'validate' subroutine.
* [svn-r14979] Purpose:Scot Breitenfeld2008-05-121-9/+32
| | | | Added additional verification test for H5Aget_info_f
* [svn-r14975] Purpose: Add Windows fixes for new Fortran code.Scott Wegner2008-05-121-1/+1
| | | | | | | | Description: There were a number of small tweaks we needed to make to add the new fortran_1_8 code on Windows. We create new project files, add new source to them, add the test to our test suite, and fix a few typos in the Windows-specific source code. Tested: VS2005 on WinXP
* [svn-r14972] Purpose:Scot Breitenfeld2008-05-121-44/+33
| | | | Corrected the way the total number of errors are summed up.
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