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* Add HDF5_DISABLE_TESTS_REGEX option to skip tests (#3859)Allen Byrne2023-11-221-0/+11
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* Removed the use of C wrappers from H5P APIs. (#3824)Scot Breitenfeld2023-11-031-1/+1
| | | | | | | | | | | * fix seg fault on frontier/cray * fix seg fault on frontier/cray * fix seg fault on frontier/cray * removed the use of h5pclose_c * removed the use of h5pclose_c
* Add h5pget_actual_selection_io_mode fortran wrapper (#3746)Scot Breitenfeld2023-10-231-0/+15
| | | | | | | * added h5pget_actual_selection_io_mode_f test * added tests for h5pget_actual_selection_io_mode_f * fixed int_f type conversion
* update stat arg for apple (#3726)Scot Breitenfeld2023-10-232-3/+9
| | | | | | | | | | | * update stat arg for apple * use H5_HAVE_DARWIN for Apple ifdef * fix typo * removed duplicate H5_ih_info_t * added fortran async test to cmake
* Clean Autotools files in parallel tests (#3744)Dana Robinson2023-10-231-1/+1
| | | Adds missing files to `make clean` for parallel, including Fortran.
* Attempt to quiet some warnings with cray compilers. (#3724)Scot Breitenfeld2023-10-191-4/+0
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* Correct fortran CMake generator expressions (#3670)Allen Byrne2023-10-141-9/+9
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* Some minor formatting and text changes (#3563)Allen Byrne2023-09-221-1/+1
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* removed C_INT32_T from Fortran APIs (#3537)Scot Breitenfeld2023-09-141-3/+10
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* Added new Fortran API wrappers (#3511)Scot Breitenfeld2023-09-071-18/+45
| | | | | | | | | | | | | | | | | | | * Added new wrappers for h5get_free_list_sizes_f H5Sselect_intersect_block_f H5Sselect_shape_same_f h5pget_no_selection_io_cause_f h5pget_mpio_no_collective_cause_f H5Lvisit_by_name_f H5Lvisit_f H5Fget_info_f h5dwrite_chunk_f h5dread_chunk_f * added h5pget_file_space_page_size_f, h5pset_file_space_page_size_f, h5pget_file_space_strategy_f, h5pset_file_space_strategy_f, h5info tests * added fortran tests * Update tH5F.F90
* Fixed check for a VOL's async compatibility (#3164)Scot Breitenfeld2023-06-221-4/+6
| | | | | * cap flag fix in test * added async comp. output
* Print out the VOL connector being used in the ASYNC test (#3016)Scot Breitenfeld2023-06-051-28/+45
| | | | | * Print out the VOL connector being used in the ASYNC test * Add h5pget_vol_cap_flags_f with test
* fixed GNU 4.8.5 compilation issue with C_LOC and strings (#2996)Scot Breitenfeld2023-05-231-2/+2
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* Updated H5Ovisit_f and H5Ovisit_by_name_f wrappers internals. (#2987)Scot Breitenfeld2023-05-221-10/+14
| | | | | | | | | * * Removed C wrappers for H5Ovisit_f and H5Ovist_by_name_f, modifying the Fortran source accordingly. * The intent for op_data was declared INOUT, even though the pointer address INTENT is, in actuality, IN. gfortran was optimizing out op_data in tests where the values were repeatedly reset to the same value. The values were reset in the test because the data the pointer targeted was updated in the callback. * Made use of the 'verify' function to check value correctness. * changed to useing INTEGER(C_INT) instead of C_BOOL, updated the documentation
* Added Fortran Async APIs (#2715)Scot Breitenfeld2023-04-215-3/+1476
| | | H5A, H5D, H5ES, H5G, H5F, H5L and H5O async APIs were added.
* Update copyright headers (#2184)Larry Knox2022-11-016-11/+4
| | | | | * Updated source file copyright headers to remove "Copyright by the Board of Trustees of the University of Illinois", which is kept in the top-level COPYING file.
* Multi Dataset (#2120)Neil Fortner2022-10-195-16/+266
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Fix bug with cross platform compatibility of references within vlens. No testing yet. * Merge from multi_rd_wd_coll_io to a more recent branch from develop. Untested, probably does not work yet. * Committing clang-format changes * Committing clang-format changes * Fix many bugs in multi dataset branch. Mostly works, some issues in SWMR tests. * Committing clang-format changes * Disable test in swmr.c that was failing due to bug in HDF5 unrelated to multi dataset. * Committing clang-format changes * Fixed fortran multi-dataset tests * Fixed xlf errors * Added benchmark code for multi-datasets * loops over datasets * added missing error arg. * Added gnuplot formatting * Jonathan Kim original MD benchmarking code * updated MD benchmarking code * code clean-up * Only make files in feature test mode * misc clean-up * removed TEST_MDSET_NO_LAST_DSET_2ND_PROC option * Committing clang-format changes * Change multi dataset API to use arrays of individual parameters instead of the parameter struct. * Committing clang-format changes * Update to new multi dataset Fortran API and tests. (#1724) * Update to new multi dataset Fortran API and tests. * Sync Fortran with develop. * skipping h5pget_mpio_actual_io_mode_f for now * Fixed issue with dxpl_id, changed to variable size dim. (#1770) * Remove "is_coll_broken" field from H5D_io_info_t struct * Committing clang-format changes * Minor cleanup in multi dataset code. * Committing clang-format changes * Clean up in multi dataset code. * Committing clang-format changes * Committing clang-format changes * Fix speeling * Fix bug in parallel compression. Switch base_maddr in io_info to be a union. * Committing clang-format changes * Implement selection I/O support with multi dataset. Will be broken in parallel until PR 1803 is merged to develop then the MDS branch. * Committing clang-format changes * Spelling * Fix bug in multi dataset that could cause errors when only some of the datasets in the multi dataset I/O used type conversion. * Committing clang-format changes * Integrate multi dataset APIs with VOL layer. Add async versions of multi dataset APIs. * Committing clang-format changes * Spelling fixes * Fix bug in non-parallel HDF5 compilation. * Committing clang-format changes * Fix potential memory/free list error. Minor performance fix. Other minor changes. * Committing clang-format changes * Fix memory leak with memory dataspace for I/O. * Committing clang-format changes * Fix stack variables too large. Rename H5D_dset_info_t to H5D_dset_io_info_t. * Committing clang-format changes * Remove mem_space_alloc field from H5D_dset_io_info_t. Each function is now responsible for freeing any spaces it adds to dset_info. * Committing clang-format changes * fixed _multi Fortran declaration * Refactor various things in (mostly) the serial I/O code path to make things more maintainable. * Committing clang-format changes * updated to array based, doxygen, and examples * Reinstate H5D_chunk_map_t, stored (via pointer) inside H5D_dset_io_info_t. * Change from calloc to malloc for H5D_dset_io_info_t and H5D_chunk_map_t. Switch temporary dset_infos to be local stack variables. * Committing clang-format changes * format cleanup * format cleanup * added coll and ind * Modify all parallel I/O paths to take dset_info instead of assuming dset_info[0]. * Committing clang-format changes * fixed output * Rework parallel I/O code to work properly with multi dataset in more cases. Fix bug in parallel compression. * Committing clang-format changes * Prevent H5D__multi_chunk_collective_io() from messing up collective opt property for other datasets in I/O. Other minor cleanup. Add new test case to t_pmulti_dset.c for H5FD_MPIO_INDIVIDUAL_IO, disabled for now due to failures apparently unrelated to multi dataset code. * Fix spelling * Committing clang-format changes * Replace N log N algorithm for finding chunk in H5D__multi_chunk_collective_io() with O(N) algorithm, and remove use of io_info->sel_pieces in that function. * Committing clang-format changes * Replace sel_pieces skiplist in io_info with flat array of pointers, use qsort in I/O routine only when necessary. * Committing clang-format changes * Add new test case to mdset.c * Committing clang-format changes * Fix spelling * Very minor fix in H5VL__native_dataset_read() * Fix bug that could affect filtered parallel multi-dataset I/O. * Add RM entries for H5Dread_multi(), H5Dread_multi_async(), H5Dwrite_multi(), and H5Dwrite_multi_async() * Unskip test in swmr.c * Committing clang-format changes * Eliminate H5D__pre_read and H5D__pre_write * Remove examples/ph5mdsettest.c. Will fix and re-add as a test. * Enable hyperslab combinations in mdset test * Committing clang-format changes * Clarify H5Dread/write_multi documentation. * Fix bugs in multi-dataset I/O. Expand serial multi dataset test. Update macro in parallel multi dataset test. * Committing clang-format changes * Spelling * Remove obsolete entry in bin/trace * Rework type conversion buffer allocation. Only one buffer is shared between datasets in mdset mode, and it is malloced instead of calloced. * Committing clang-format changes * Fix bug in error handling in H5D__read/write * added multi-dataset fortran check with optional dataset creation id (#2150) * removed dup. dll entry * Address comments from code review. * Remove spurious changes in H5Fmpi.c * Fix issue with reading unallocated datasets in multi-dataset mode. Address other comments from code review. * Committing clang-format changes * Delay chunk index lookup from io_init to mdio_init so it doesn't add overhead to single dataset I/O. * Committing clang-format changes * Fix inappropriate use of piece_count * updated copyright on new file, removed benchmark from testing dir. Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: M. Scot Breitenfeld <brtnfld@hdfgroup.org> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
* address test failing when default real and integers are 8 bytes (#2173)Scot Breitenfeld2022-10-191-6/+17
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* Subfiling Fortran wrapper work. (#2143)Scot Breitenfeld2022-10-067-23/+454
| | | | | | | | | | | | | | | | | * added C ref. for Fortran constants * added C ref. for Fortran constants * move constant paramters to H5* module listing * added back comment * Fortran subfiling and ioc FD with tests. H5Pset/get_mpi_params wrappers with tests, misc.. parallel test clean-up. * misc. fixes * fixed CMake testpar issues, formatted, misc. updates * updated tests
* Update CMake code to 3.18 minimum version (#2080)Allen Byrne2022-09-031-1/+1
| | | | | * Update CMake code to 3.18 minimum version * Updated release note
* changes parallel tests to .F90 ext. and fixes the CALL check strings (#1725)Scot Breitenfeld2022-05-045-19/+18
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* Update license url part2 (#333)Larry Knox2021-02-175-5/+5
| | | | | | * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING file - files not in src or test.
* Trim trailing whitespaceQuincey Koziol2020-04-202-4/+4
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* Flag construction must be after compiler detectionAllen Byrne2020-04-051-7/+5
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* TRILAB-192 add c++ and fortran warnings build systems one fileAllen Byrne2020-04-051-4/+2
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* TRILAB-142 Change minimum CMake version to 3.12Allen Byrne2020-02-211-1/+1
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* HDFFV-11011 - merge include listAllen Byrne2020-01-291-2/+1
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* HDFFV-11011 correct issues with target file extensionAllen Byrne2020-01-281-12/+31
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* HDFFV-11001 Add fine control over testingAllen Byrne2020-01-151-1/+3
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* Reverts the removal of config/conclude_fc.am while keepingDana Robinson2019-08-011-1/+1
| | | | the changes to config/gnu-fflags.
* Parallel Fortran tests now use the MPI module instead of includingDana Robinson2019-07-193-3/+5
| | | | mpif.h.
* Updated gfortran options.Dana Robinson2019-07-171-1/+1
| | | | | | | | * Removed conclude_fc.am, which was causing verbose builds. Need to investigate more, though. * Added gfortran 9 warnings and flags. This will need to be separated into other version blocks based on when the options first appeared. * The standard is now explicitly set at 2008.
* Refactor mpi test namesAllen Byrne2019-02-111-1/+1
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* Rename parallel tests to start with PAR_Allen Byrne2019-02-111-1/+1
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* Add missing module_dir propertyAllen Byrne2018-05-091-0/+1
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* Correct command usageAllen Byrne2018-05-071-1/+1
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* Remove APPENDAllen Byrne2018-05-031-1/+1
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* Revert to old style for LINK_FLAGS gen expr not workingAllen Byrne2018-05-031-6/+9
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* LINK_FLAGS must be separate property setsAllen Byrne2018-05-031-3/+6
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* Fix link flags syntaxAllen Byrne2018-05-031-3/+3
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* Revert refactor link flagsAllen Byrne2018-05-021-3/+3
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* refactor link flags to interfaceAllen Byrne2018-05-021-3/+3
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* TRILABS-19 Link flags need - characterAllen Byrne2018-05-021-1/+1
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* TRILABS-19 Refactor fortran propertiesAllen Byrne2018-04-301-10/+18
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* TRILABS-19 remove add_defintions and use generator expressionsAllen Byrne2018-04-261-1/+1
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* TRILABS-20 set a compiler name on all project commandsAllen Byrne2018-04-201-1/+1
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* Change CMake min to 3.10Allen Byrne2018-03-091-1/+1
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* Inc CMake min, Add new tests, rework test CMake filesAllen Byrne2018-02-271-1/+1
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* HDFFV-10385 rework java namesAllen Byrne2018-01-171-1/+0
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* Correct usage of MPI varsAllen Byrne2017-11-012-3/+3
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