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* Correct fortran CMake generator expressions (#3670)Allen Byrne2023-10-144-59/+59
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* Fix link error on clang17/gfortran13/macOS-13 (#3666) (#3671)H. Joe Lee2023-10-131-5/+3
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* Fixes test failure for gfortran -O2 and -O3, -fdefault-real-16 (#3662)Scot Breitenfeld2023-10-131-2/+1
| | | | | | | | | * added cmake ieee flag for nagfor * fixes gfortran -O2 and -O3, -fdefault-real-16 * fixed sync * updated release notes
* Address nagfor exceptions stoppage. (#3658)Scot Breitenfeld2023-10-116-79/+13
| | | | | | | * added cmake ieee flag for nagfor * generalized determining the nag compiler * fixing some misc. NAG warnings
* Removed the use of -commons linking option on Darwin (#3581)Scot Breitenfeld2023-09-251-2/+0
| | | | Removed the use of -commons linking option on Darwin as COMMON and EQUIVALENCE is no long used
* Fix ifx unused variable hdferr warning. (#3568)H. Joe Lee2023-09-221-0/+3
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* Some minor formatting and text changes (#3563)Allen Byrne2023-09-221-1/+1
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* Strip HD prefix from string/char C API calls (#3540)Dana Robinson2023-09-151-1/+1
| | | | | | | | | | | | | | | | | | | | | * Strip HD prefix from string/char C API calls * HD(f)(put|get)(s|c) * HDstr* * HDv*printf * HD(s)(print|scan)f * HDperror But NOT: * HDstrcase* * HDvasprintf * HDstrtok_r * HDstrndup As those are not C99 and have portability work-around implementations. They will be handled later. * Fix th5_system.c screwup
* fixed arg to C H5Dwrite_chunk (#3541)Scot Breitenfeld2023-09-151-10/+10
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* removed C_INT32_T from Fortran APIs (#3537)Scot Breitenfeld2023-09-145-47/+72
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* fixed nvidia compiler issue (#3527)Scot Breitenfeld2023-09-111-10/+6
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* misc. fortran fixes for failing CI dailty tests (#3523)Scot Breitenfeld2023-09-087-60/+100
| | | | | * fixed H5Lvisit* interface * changed integer type for direct write
* Added new Fortran API wrappers (#3511)Scot Breitenfeld2023-09-0726-1399/+2773
| | | | | | | | | | | | | | | | | | | * Added new wrappers for h5get_free_list_sizes_f H5Sselect_intersect_block_f H5Sselect_shape_same_f h5pget_no_selection_io_cause_f h5pget_mpio_no_collective_cause_f H5Lvisit_by_name_f H5Lvisit_f H5Fget_info_f h5dwrite_chunk_f h5dread_chunk_f * added h5pget_file_space_page_size_f, h5pset_file_space_page_size_f, h5pget_file_space_strategy_f, h5pset_file_space_strategy_f, h5info tests * added fortran tests * Update tH5F.F90
* Add Fortran ES module to deploy list (#3341)Allen Byrne2023-08-041-44/+30
| | | | | * Add Fortran ES module to deploy list * Change fortran mod file export to use a list of names
* removed the use of encoded single apostrophe (#3261)Scot Breitenfeld2023-07-2011-44/+44
| | | | | | * removed the use of encoded single apostrophe, and fix H5Dread_chunk from write to read * updated sanitizer paragraph * fixed brief description for H5Fget_info
* changed the scope of #ifdef DOXYGEN to now include H5D multi-functions (#3254)Scot Breitenfeld2023-07-181-2/+3
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* Fixed more warnings about extra semicolons (#3249)Sean McBride2023-07-187-56/+56
| | | | | | | * Require semi-colon after H5_CHECK_OVERFLOW calls Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* addresses compilation fortran warnings on Frontier (#3236)Scot Breitenfeld2023-07-1216-20/+12
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* Remove programmer/date from comments (#3210)Dana Robinson2023-06-2930-1774/+6
| | | | * Removes Programmer: and Date: fields * Fixes a few Modifications: fields leftover from previous work
* Remove HD/hbool_t from fortran (#3182)Dana Robinson2023-06-2818-254/+254
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* Fixed check for a VOL's async compatibility (#3164)Scot Breitenfeld2023-06-221-4/+6
| | | | | * cap flag fix in test * added async comp. output
* Print out the VOL connector being used in the ASYNC test (#3016)Scot Breitenfeld2023-06-058-97/+386
| | | | | * Print out the VOL connector being used in the ASYNC test * Add h5pget_vol_cap_flags_f with test
* Convert H5F haddr_t macros to H5 (#3039)Dana Robinson2023-06-051-1/+1
| | | | | | | | | | | | | | | | | | | | | | Several macros for handling haddr_t values exist in H5Fprivate.h and have H5F prefixes, even though they have nothing to do with a particular file (e.g., H5F_addr_lt()). These macros have been moved to H5private.h and renamed to have an H5 prefix. Affected macros: H5F_addr_overflow H5F_addr_defined H5F_addr_eq H5F_addr_ne H5F_addr_lt H5F_addr_le H5F_addr_gt H5F_addr_ge H5F_addr_cmp H5F_addr_overlap H5F_addr_pow2 was unused and removed instead of converted.
* Fixed Fortran Doxygen warnings (#3017)Scot Breitenfeld2023-05-268-94/+104
| | | | Fixes Fortran doxygen warnings, #2998
* fixed GNU 4.8.5 compilation issue with C_LOC and strings (#2996)Scot Breitenfeld2023-05-231-2/+2
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* Updated H5Ovisit_f and H5Ovisit_by_name_f wrappers internals. (#2987)Scot Breitenfeld2023-05-227-171/+72
| | | | | | | | | * * Removed C wrappers for H5Ovisit_f and H5Ovist_by_name_f, modifying the Fortran source accordingly. * The intent for op_data was declared INOUT, even though the pointer address INTENT is, in actuality, IN. gfortran was optimizing out op_data in tests where the values were repeatedly reset to the same value. The values were reset in the test because the data the pointer targeted was updated in the callback. * Made use of the 'verify' function to check value correctness. * changed to useing INTEGER(C_INT) instead of C_BOOL, updated the documentation
* Fix 'datatype' misspellings ('dataype') (#2984)Dana Robinson2023-05-191-1/+1
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* Fixes failures with gfortran 4.8 (#2979)Scot Breitenfeld2023-05-183-19/+25
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* Updated INTENT to IN for C_PTR types dummy args. (#2961)Scot Breitenfeld2023-05-178-133/+133
| | | | * Changed to INTENT(IN) for C_PTR dummy args since it refers to whether C_PTR can be changed and does not relate to the INTENT state of the target.
* added missing H5ES function DLLs (#2969)Scot Breitenfeld2023-05-172-0/+21
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* addresses gfortran issue https://gcc.gnu.org/bugzilla/show_bug.cgi?id=109861 ↵Scot Breitenfeld2023-05-152-9/+9
| | | | (#2957)
* Fix CMake generator expression syntax (#2909)Allen Byrne2023-05-053-16/+16
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* Remove references to old MANIFEST file (#2890)jhendersonHDF2023-05-031-1/+0
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* Fixed test failure for when REAL is promoted via a compiler flag (#2873)Scot Breitenfeld2023-05-022-13/+14
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* Add Fortran Selection IO APIs (#2864)Scot Breitenfeld2023-05-018-50/+407
| | | new selection IO fortran APIs with tests
* Remove "the the" from comments and docs (#2865)Dana Robinson2023-05-015-13/+13
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* Remove unused variable warning (#2828)H. Joe Lee2023-04-281-1/+1
| | | Polaris FORTRAN compiler reported the unused variable warning.
* Added Fortran Async APIs (#2715)Scot Breitenfeld2023-04-2139-2666/+6146
| | | H5A, H5D, H5ES, H5G, H5F, H5L and H5O async APIs were added.
* Comment cleanup (#2689)Quincey Koziol2023-04-118-34/+0
| | | * Clean up content and redundant logging in comments.
* Make sure that ONLY_SHARED_LIBS option is correctly set (#2544)Allen Byrne2023-03-132-14/+14
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* Fix new codespell issues (#2521)Mark Kittisopikul2023-03-082-2/+2
| | | | | * Fix new codespell issues * Have codespell ignore ./config/sanitizer/sanitizers.cmake
* CMake generated pkg-config file is incorrect #2259 (#2476)Allen Byrne2023-02-171-2/+6
| | | | | | | | | | | | | * CMake generated pkg-config file is incorrect #2259 * Fix fortran pc template * hdf5.pc is incorrect for debug builds #1546 * Correct pkg name and lib name * Fix typo * Fix missing space
* Pass-through connector testing flexibility (#2399)Quincey Koziol2023-01-091-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * Correct concurrency bugs when running tests, along with a bugfix & small warning cleanup. * Committing clang-format changes * Allow spaces (and tabs) in VOL connector info string from environment variable. * Parse connector name from HDF5_PLUGIN_PATH environment variable better * Correct H5VLquery_optional to use H5VL routine instead of H5I. Also add an error message to the failure return value from not finding a plugin. * Play nice with existing plugin paths * Use API routine to determine if native connector is terminal. * Committing clang-format changes * Make string size larger, to allow for connectors with longer names. * Be more flexible about testing external pass through connectors, especially if they have registered new optional operations. Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: AWS ParallelCluster user <ec2-user@ip-10-0-0-65.us-east-2.compute.internal> Co-authored-by: Koziol <qkoziol@88665a374c70.ant.amazon.com>
* Update FORTRAN VOL connector test for external pass-through testing (#2393)Quincey Koziol2023-01-051-1/+3
| | | | | | | | | | | | | | | | | * Correct concurrency bugs when running tests, along with a bugfix & small warning cleanup. * Committing clang-format changes * Allow spaces (and tabs) in VOL connector info string from environment variable. * Parse connector name from HDF5_PLUGIN_PATH environment variable better * Correct H5VLquery_optional to use H5VL routine instead of H5I. Also add an error message to the failure return value from not finding a plugin. Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: AWS ParallelCluster user <ec2-user@ip-10-0-0-65.us-east-2.compute.internal> Co-authored-by: Koziol <qkoziol@88665a374c70.ant.amazon.com>
* Fix doxygen warnings and remove javadocs (#2324)Allen Byrne2022-12-201-25/+0
| | | | | * Fix doxygen warnings and remove javadocs * fix typo
* fixed unclosed objects in test (#2290)Scot Breitenfeld2022-12-101-6/+10
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* Correct requires setting for pkgconfig files (#2280)Allen Byrne2022-12-071-2/+2
| | | | | * Correct requires setting for pkgconfig files * Add issue number
* Update copyright headers (#2184)Larry Knox2022-11-01106-149/+43
| | | | | * Updated source file copyright headers to remove "Copyright by the Board of Trustees of the University of Illinois", which is kept in the top-level COPYING file.
* Removed the file, func, line args in the _async APIs fpr doxygen (#2179)Scot Breitenfeld2022-10-257-24/+24
| | | | | | | | | | | | | | | | | | | | | | | | | * Removed the: file, func, line args in the _async APIs from the doxygen arguments. Documented H5ESclean. * format fixes * fixed DOXYGEN_PREDEFINED * Fixed the #ifdet logic for doxygen, added missing multi-dataset va_args * format fixes * Use H5_DOXYGEN instead of H5_DOXYGEN_FORTRAN * reordered multidataset declarations * alt. for H5Aclose_async and H5Acreate_async * made doxgyen API into seperate blocks * updated codespell * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Implement option for using CMake GNUInstallDirs (#2175)Allen Byrne2022-10-251-3/+3
| | | | | * Implement option for using CMake GNUInstallDirs * Add release notes
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