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* [svn-r13256] Updated fortran source code with new THG copyright.Albert Cheng2007-02-0752-104/+156
| | | | Tested: kagiso.
* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-0719-38/+57
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
* [svn-r13242] Bug fix.Albert Cheng2007-02-061-2/+16
| | | | | | | | It was hardcoded to use /tmp/... as the default test file name. Changed it to use $HDF5_PARAPREFIX/... to compose the test file name. Platform Tested: tg-ncsa since it failed there. (Will test other platforms after commit.)
* [svn-r13203] Unable to replicate Daily Test error, but hopefully this is a ↵James Laird2007-01-262-2/+4
| | | | | | | | | | fix anyway. The examples had been depending on the build libraries in src, but should have been depending only on the installed h5cc. Fixed this. Tested on kagiso (dependency change only, and was unable to replicate the problem on any system). Real test will be Daily Tests tonight.
* [svn-r13181] Added a configure check to prevent a failure on Cygwin.James Laird2007-01-235-5/+5
| | | | | | | | | | | | | | It seems that while Cygwin supports the time command, it has trouble with the syntax srcdir="../../hdf5/test" time ./testhdf5 and complains. The solution is to test the above case in configure and not to use the time command if it fails; Cygwin is fine with srcdir="../../hdf5/test" ./testhdf5 Tested on Cygwin and kagiso. This feature shouldn't be a major compatibility problem since every platform but Cygwin is already fine with the current syntax.
* [svn-r12929] Hopefully this really is a fix for the tg-login errors.James Laird2006-11-165-11/+5
| | | | | | | | | | | The version of libtool used by HDF5 isn't directly affected by the reconfigure script; instead, libtoolize --force must be used by hand. Libtool was the source of the problem, so rolling its version back to 1.5.14 should solve the issue (at least temporarily). Reconfigure should still work on both heping and kagiso. Tested on heping, kagiso, and tg-login3.
* [svn-r12911] Backed up to previous versions of automake and libtool. ↵James Laird2006-11-145-5/+11
| | | | | | | | Hopefully this will fix issues on tg-login3. bin/reconfigure should still work on both heping/mir and kagiso.
* [svn-r12887] A fix for linking issues.James Laird2006-11-105-0/+5
| | | | | | | | | | | | Should disable linking against shared libraries in Fortran for compilers that don't support shared libraries. Should also fix problem when the wrong Fortran file extension was specified. If these changes don't solve the Daily Test issues, I'll look at backing out the autotool version change until I have time to fix them. Tested on heping, kagiso, juniper.
* [svn-r12882] Changed bin/reconfigure to work on kagiso as well as on AFS ↵James Laird2006-11-085-31/+45
| | | | | | | | Linux machines. Updated to the latest versions of autotools. Tested on kagiso, heping, and juniper. Let me know if you have any problems.
* [svn-r12842] Description:Quincey Koziol2006-11-024-18/+18
| | | | | | | | | | | | | | | | Refactor generic property list initialization code to put property list specific routines in property list modules, instead of scattered to the four winds. Also, introduce property list class initialization objects, to make adding new property list classes in the library easier. Fix daily test failure by using H5Pget_elink_prefix() API routine instead of looking at the "raw" generic property list information. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 4.11 (sleipnir) w/threadsafe Linux/32 2.4 (heping) w/C++ & FORTRAN Linux/64 2.4 (mir) w/build-all & 1.6 compat
* [svn-r12808] Fixed a few typos in the recent changes to support g95 that ↵Elena Pourmal2006-10-242-4/+4
| | | | | | | were exposed on Windows. Platforms tested: Those were changes to the Windows related code only; will be tested by windows daily tests.
* [svn-r12778] Multi file driver test fails. Elena Pourmal2006-10-191-8/+4
| | | | | | | | | | | | | | | | | Skipped until fix is found. Tested on heping with pgf90. Note: Logic was wrong; as a result, the test was bypassed for all compilers except those (like Intel) that understand !DEC compiler directive. I confirmed that the test fails on heping with pgf90. The symptoms are the same: 1.6.5 h5dump can read multi files created by fortran test, but built h5dump fails with internal error. --This line, and those below, will be ignored-- M test/fortranlib_test.f90
* [svn-r12765] Description:Elena Pourmal2006-10-161-27/+27
| | | | | | | | | | Daily tests failed for Absoft f95 compiler Solution: Failure was due to several typos in H5f90prpto.h file; fixed I also removed redundant flags from the configration files. Platforms tested: heping with f95, g95, pgf90; pommier with f95
* [svn-r12752] Descripton: This is a port to G95 compiler for MAC OSX and AIX 5.2Elena Pourmal2006-10-1213-811/+2612
| | | | | | | | | | | | | | | | Previous implementation failed to compile on MAC OS X Tiger 10.4 and AIX 5.2 In previous implementation, each overloaded Fortran function called the same C function. Since declaration of parameters in INTERFACE block for C Function differed, some compilers issued warnings but g95 on MAC and AIX failed to compile. Solution: Add C wrappers corresponding to each overloaded Fortran function to call C stub function. This fix should also reduce number of warnings on IRIX systems. Platforms tested: MAC OS and AIX 5.2 (copper) with g95; sol (with Sun compilers), heping with PGI compilers
* [svn-r12741] Added support for direct I/O to check-vfd. The direct VFD is ↵James Laird2006-10-105-10/+10
| | | | | | | | | | only tested if it is enabled. Added Direct VFD status to the configure summary. Removed a line left over from pablo support. Oops!
* [svn-r12715] Incorporated a user-submitted patch to better detect the 'tr' ↵James Laird2006-10-035-0/+5
| | | | | | | | | | | | utility and quote its arguments. Also checks for the 'socket' library on Solaris. If this patch passes the Daily Tests and makes the user happy, I'll port it back to the 1.6 branch. Tested on mir and sol.
* [svn-r12700] Alert:Quincey Koziol2006-10-024-65/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | File format is not stable, don't keep files produced! Description: First stage of checkins modifying the format of groups to support creation order. Implement "dense" storage for links in groups. Try to clarify some of the symbols for the H5L API. Add the H5Pset_latest_format() flag for FAPLs, to choose to use the newest file format options (including "dense" link storage in groups) Add the H5Pset_track_creation_order() flag for GCPLs, to enable creation order tracking in groups (although no index on creation order yet). Remove --enable-group-revision configure flag, as file format issues are now handled in a backwardly/forwardly compatible way. Clean up lots of compiler warnings and other minor formatting issues. Tested on: FreeBSD/32 4.11 (sleipnir) w/threadsafe Linux/32 2.4 (heping) w/FORTRAN & C++ Linux/64 2.4 (mir) w/enable-v1.6 compa Mac OSX/32 10.4.8 (amazon) AIX 5.3 (copper) w/parallel & FORTRAN
* [svn-r12668] Description:Quincey Koziol2006-09-151-1/+1
| | | | | | | Re-run 'bin/reconfigure' script after recent checkins Tested on: none - shouldn't have any affect on compilation
* [svn-r12640] Frank Baker2006-09-041-0/+16
| | | | | | | | Description: Add per-directory abbreviated copyright notices (abbreviated COPYING files pointing to full notices). Tested: MANIFEST verified; not otherwise tested.
* [svn-r12608] Checked in External Link C examples.James Laird2006-08-225-5/+5
| | | | | | | | Since these examples need to follow filesystem paths, the Makefiles need to create directories in the examples directory; added this to the Makefile.am. Tested on Windows, mir, juniper
* [svn-r12584] Mentioned VFD in test output to make it easier to tell which ↵James Laird2006-08-175-35/+30
| | | | | | | | | VFD is being used when a test is run. Running reconfigure also regenerated error header files (because someone edited them manually?).
* [svn-r12519] Fixed "make check-vfd"James Laird2006-07-315-10/+15
| | | | | | | | | | "make check-vfd" will now run all tests in the test directory with different file drivers (at least, all of those tests that use the testing framework's FAPL). Tests that fail will be skipped. This is not a perfect fix, but is better than nothing. Along with this change, check-vfd should be added to the Daily Tests.
* [svn-r12452] Purpose:James Laird2006-07-051-1/+1
| | | | | | | | | | | | | | | | | | | | | | Feature Description: Revised Link APIs. Solution: New link APIs use H5L* H5*create_expand do not create links to the objects created; this must be done manually with H5Llink. Added APIs to link an object given its ID (H5Llink), to copy links (H5Lcopy), and changed creation APIs (H5Lcreate_hard and H5Lcreate_soft) and query API (H5Lget_linkinfo instead of H5Gget_objinfo). All old APIs are still supported in H5Gdeprec.c . Platforms tested: sol, mir, copper Misc. update: Forgot to update MANIFEST and release docs. Will do after checkin.
* [svn-r12440] Purpose:Quincey Koziol2006-06-273-7/+7
| | | | | | | | | | | Code cleanup Description: Trim trailing whitespace in Makefile.am and C/C++ source files to make diffing changes easier. Platforms tested: None necessary, whitespace only change
* [svn-r12431] Purpose:James Laird2006-06-217-82/+41
| | | | | | | | | | | | | | Configuration feature Description: 'make install' now tests both static and shared libraries if both are installed. Solution: Previously, shared libraries were only tested when static libraries were not installed. Also cleaned up line in commence.am that was including HL library in all Makefiles. Platforms tested: mir (Makefile change only)
* [svn-r12411] Purpose:James Laird2006-06-135-0/+5
| | | | | | | | | | | | | | Bug fix - bugzilla #552 Description: On Cray X1, trying to use : as an argument confused the system. Solution: Added a test in configure to see if : as an argument is bad. If so, skipped the test. Platforms tested: mir, Cray X1 (change to configure only)
* [svn-r12379] Purpose:James Laird2006-05-262-5/+7
| | | | | | | | | | | | | | | Bug fix Description: tg-login was having an error about H5match_types.Tpo being missing. Solution: tg-login was trying to build H5_match_types twice at the same time and becoming confused as a result. Massaged the dependencies in the Makefile.am to prevent this. Platforms tested: mir, sol, tg-login
* [svn-r12358] Purpose:Albert Cheng2006-05-195-5/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug fix. Description: The ${TR}, though avoid the error, is inconvenient. It is needed because configure.in use the char range in the style of 'a-z'. The other style of '[a-z]' is more commonly accepted by all tr but autoconf tends to strip away [], making the syntax rather clumsy. Solution: Learned from autoconf that it avoids the use of character range by just spell all the letters out. Changed our tr commands to use those variables defined by autoconf. Also removed the definition of ${TR} since it will cause inconsistancy when autoconf also use plain 'tr' in its generated code. The Makefile.in are changed because the elimination of ${TR} from configure triggered its removal from all Makefil.in. That is okay because ${TR} is not used at all in Makefile. Platforms tested: h5committested. (sol failed to connected). also tested in shanti using both /usr/ucb/tr and /bin/tr (the bad one before.) Misc. update: Updated both INSTALL and RELEASE files.
* [svn-r12347] Purpose: Maintenance/bug fixElena Pourmal2006-05-144-1/+67
| | | | | | | | | | | | | | | | Description: When --enable-group-revision flag was used, h5fget_filesize_f function returned different value from expected one. Test failed with false negative result. Solution: Added Fortran function h5_group_revision_f and its C stub to check if macro H5_GROUP_REVISION is defined. Expected value from h5fget_filesize_f is set up accordingly. Platforms tested: copper, shanti and heping with and without --enable-group-revision configuration flag Misc. update:
* [svn-r12295] Purpose:James Laird2006-04-215-15/+15
| | | | | | | | | | | | | | | | | | | Several bug fixes Description: Added config file for Cray X1 (previous file was misnamed) Simplified some code in hyperslab.c test that seemed to have been confusing compiler on Cray X1. Fixed typo in config/commence.am Cleaned up hl/src/Makefile.am Solution: All four fixes should be straightforward. The failure on Cray was very difficult to debug, but involved arithmetic errors. This change seems to fix it. Platforms tested: heping, copper, sol, some Cray X1 (more testing when system comes back up)
* [svn-r12270] Purpose: Bug fix (it is quite serious, so I decided to check ↵Elena Pourmal2006-04-171-4/+4
| | | | | | | | | | | | | | | the fix in) Description: H5match_types uses reserved "INT" string and writes it to the H5H5fortran_types.f90 file. If application uses Fortran intrinsic INT and HDF5, compilation fails since it becomes redefined in H5H5fortran_types.f90. Solution: Rename INT to Fortran_INTEGER Platforms tested: copper, shanti, heping with g95 Misc. update:
* [svn-r12251] Purpose: MaintenanceElena Pourmal2006-04-141-2/+12
| | | | | | | | | | Description: file_close and multi driver tests fail on VMS. Solution: IFDEF'ed them for now with !DEC directive. Platforms tested: VMS server, heping Misc. update:
* [svn-r12229] Purpose:Pedro Vicente Nunes2006-04-127-7/+21
| | | | | | | | | | | | | | | | | | | | | new feature Description: 1) separated the HL library into "public" and "private" header files, with the same caracteristics as the basic library 2) added the public headers to hdf5.h (with a conditional include macro, defined in configure.in) 3) added the path to HL in all Makefile.am 's , because of the inclusion in hdf5.h Solution: Platforms tested: linux 32, 64 AIX solaris with fortran and c++ (one packet table example fails) Misc. update:
* [svn-r12217] Purpose:Quincey Koziol2006-04-101-4/+5
| | | | | | | | | | | | | | | | | Code cleanup Description: Tweak fortran test for alpha release to check for different file size (a size difference between the compact & "old" dense form). Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 32-bit (heping) Linux 2.4 64-bit (mir) Solaris 2.9 (shanti) Misc. update:
* [svn-r12149] Purpose:James Laird2006-03-235-35/+5
| | | | | | | | | | | | | | | | Bug fix Description: Previous checkin did a bad thing; 'make clean' failed in example directories. Solution: Fixed commence.am so that examples no longer break, and fixed a mistake in conclude.am. Platforms tested: heping (minor makefile change) Misc. update:
* [svn-r12143] Purpose:James Laird2006-03-236-9/+38
| | | | | | | | | | | | | | Bug fix Description: make check-clean didn't clean results of example tests Solution: Fixed Makefiles so that check-clean recurses into example directories. Also a little Makefile cleanup. Platforms tested: mir, modi4, heping, copper
* [svn-r12053] Purpose: VMS portElena Pourmal2006-03-091-0/+4
| | | | | | | | | | | | Description: defined H5_FC_FUNC_(name, NAME) for VMS since we cannot run autoconf on that system Solution: Used append methos to form the string; this may become the change for all platforms after more testing Platforms tested: heping, VMS server Misc. update:
* [svn-r11780] Purpose:James Laird2005-12-092-73/+44
| | | | | | | | | | | | | | | | | Added high-level example directories Description: Refactored common code out of examples Makefiles.am, added high-level example directories, added packet table examples. Solution: Examples now draw from a common config/examples.am file, which contains rules for installing, uninstalling, and cleaning examples. High-level example directories are mostly empty, except for the C and C++ packet table tests. Platforms tested: mir, sleipnir, copper, shanti
* [svn-r11779] Purpose:Quincey Koziol2005-12-091-2/+2
| | | | | | | | | | | | Bug fix Description: Change unsigned index variable to signed index variable (again), to fix error introduced with last Windows warnings cleanup. Platforms tested: Linux 2.4 (heping) w/FORTRAN Too minor to require h5committest
* [svn-r11771] Purpose:Quincey Koziol2005-12-082-4/+2
| | | | | | | | | | | | Code cleanup Description: Fix a bunch of warnings flagged by Windows compilers. Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r11758] Purpose:Quincey Koziol2005-12-044-19/+19
| | | | | | | | | | | | | New feature Description: Add in a combination of Peter's & my code to support copying variable-length data from one file to another, although currently only supported with contiguous data storage. Platforms tested: FreeBSD 4.11 (sleipnir) h5committest
* [svn-r11741] Purpose:James Laird2005-11-186-34/+90
| | | | | | | | | | | | | | | | | Bug fix Description: Fortran type generation was broken in two ways. Fixed both. Solution: Firstly, there were a couple of path problems. Fixed a typo and specified the full path of a file. Secondly, the dependencies weren't right when building with HDF5-specific commands (make lib, make check-s, etc.). Tweaked dependencies to fix the problem. Platforms tested: mir, modi4, sleipnir
* [svn-r11738] Purpose:James Laird2005-11-185-0/+20
| | | | | | | | | | | | | | | | | | | Configure feature Description: Added 'make trace' target. Solution: Added tracing to 1.7. This was done automatically in 1.6, but left out of 1.7 until now (oops!). Tracing in 1.7 only happens manually, when the user types 'make trace.' Tracing automatically requires more framework than it's worth. I also fixed a couple of tracing bugs and ran trace. Platforms tested: mir, sleipnir, modi4 Misc. update:
* [svn-r11737] Purpose:James Laird2005-11-175-0/+40
| | | | | | | | | | | | | | | | | | | | | | | | Bug fix Description: Before this checkin, 'gmake check-s' would fail if there was a file in the current directory named 'check-s'. This is fixed under gmake (not sure how to fix for other makes). Solution: check, progs, install, etc. are what gmake calls "phony" targets, which means that no file should be created. These targets can be specified by a line of the form .PHONY: check progs install ... Automake adds this line for targets it knows about, but HDF5 has a lot of custom rules. This checkin adds a .PHONY line for those rules. I believe that only gmake recognizes the .PHONY line (at least, pmake doesn't seem to), but a partial solution is better than none. This error should occur very rarely anyway (the user has to manually create files with names like 'build-check-s' or '_test'). Platforms tested: mir, sleipnir, modi4
* [svn-r11712] Purpose:Quincey Koziol2005-11-151-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | New feature Description: Check in baseline for compact group revisions, which radically revises the source code for managing groups and object headers. WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! This initiates the "unstable" phase of the 1.7.x branch, leading up to the 1.8.0 release. Please test this code, but do _NOT_ keep files created with it - the format will change again before the release and you will not be able to read your old files!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! Solution: There's too many changes to really describe them all, but some of them include: - Stop abusing the H5G_entry_t structure and split it into two separate structures for non-symbol table node use within the library: H5O_loc_t for object locations in a file and H5G_name_t to store the path to an opened object. H5G_entry_t is now only used for storing symbol table entries on disk. - Retire H5G_namei() in favor of a more general mechanism for traversing group paths and issuing callbacks on objects located. This gets us out of the business of hacking H5G_namei() for new features, generally. - Revised H5O* routines to take a H5O_loc_t instead of H5G_entry_t - Lots more... Platforms tested: h5committested and maybe another dozen configurations.... :-)
* [svn-r11655] Purpose:James Laird2005-11-011-3/+9
| | | | | | | | | | | | | Bug fix Description: Fixed a bug when using h5fc and h5c++ with static libraries. Added high-level C++ and Fortran libraries to h5c++ and h5fc. Solution: Platforms tested: mir, heping, shanti, sleipnir
* [svn-r11646] Purpose:James Laird2005-10-316-27/+133
| | | | | | | | | | | | | | | | | | Bug fix/feature Description: Added support for -shlib in h5fc and h5c++. Made check-install use -shlib when only shared libraries have been installed. Solution: h5fc and h5c++ didn't recognize -shlib. Stole code from h5cc to link against shared libraries. When static libraries are disabled, the examples Makefiles will automatically use the -shlib option to link against shared libraries. Thus, --disable-static and make check-install should work together. Platforms tested: heping(disable-static, enable-static, fortran, c++), modi4 (disable-static, fortran, c++, parallel, enable-static)
* [svn-r11612] Purpose:James Laird2005-10-275-5/+5
| | | | | | | | | | | | | Bug fix Description: Failed parallel tests now cause make to exit with an error. Solution: Edited config/conclude.am to throw an error if parallel test programs fail. Platforms tested: heping, modi4
* [svn-r11602] Purpose:James Laird2005-10-245-15/+0
| | | | | | | | | | | | Bug fix Description: Removed detection of pdb from configure.in as a corollary to removal of pdb2hdf5 tool. Platforms tested: mir, modi4
* [svn-r11573] Purpose:James Laird2005-10-175-0/+5
| | | | | | | | | | | | | | | | | | | | Bug fix Description: Changed configure.in to use an environment variable TR to set the path to the tr utility. Solution: There are two kind of tr on Solaris with slightly different syntax. HDF5's configure relies on the "standard" tr. Traditionally, HDF5ers have needed to make sure that the "right" tr was found before the wrong one in their path; now they can use an environment variable. Platforms tested: mir, shanti, sol Misc. update: Forgot to update release notes. Off to do that now.
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