| Commit message (Collapse) | Author | Age | Files | Lines |
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proper variables.
Tested: local linux
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LDFLAGS in the correct place and to enable the script user to set and override CFLAGS, CPPFLAGS, CXXFLAGS, FFLAGS, LDFLAGS, and LIBS that take pprecedence over the library paths and compile flags from the hdf5 build.
Tested with h5committest on amani, heiwa, and jam.
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has been removed. According to the official description of DESTDIR by Gnu at
http://www.gnu.org/prep/standards/html_node/DESTDIR.html, DESTDIR is
prepended to the normal and complete install path that it precedes for the
purpose of installing in a temporary directory which is useful for building
rpms and other packages. The '/' after ${DESTDIR} will be followed by another
'/' at the beginning of the normal install path. When DESTDIR is empty the
path then begins with '//', which is incorrect and causes problems at least for
Cygwin.
The change made in config/commence.am affects many Makefile.*s when bin/reconfigure
is run. EXAMPLEDIRs had to be corrected individually.
Also the scripts to run examples after they are installed have checks added to see
that the fortran and c++ directories are present before trying to run the scripts
in them.
Tested with h5committest on amani, heiwa and jam.
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and m4 to version 1.4.14. Also added m4 directory for m4 macros according to autoconf suggestion.
Tested with h5committest on amani, jam, and heiwa, and on linew.
-This line, and those below, will be ignored--
M hdf5_1_8/test/Makefile.in
A hdf5_1_8/m4
AM hdf5_1_8/m4/ltsugar.m4
AM hdf5_1_8/m4/libtool.m4
AM hdf5_1_8/m4/ltversion.m4
AM hdf5_1_8/m4/lt~obsolete.m4
AM hdf5_1_8/m4/ltoptions.m4
M hdf5_1_8/configure
M hdf5_1_8/Makefile.in
M hdf5_1_8/testpar/Makefile.in
M hdf5_1_8/configure.in
M hdf5_1_8/src/Makefile.in
M hdf5_1_8/tools/Makefile.in
M hdf5_1_8/tools/misc/Makefile.in
M hdf5_1_8/tools/h5dump/Makefile.in
M hdf5_1_8/tools/h5repack/Makefile.in
M hdf5_1_8/tools/h5jam/Makefile.in
M hdf5_1_8/tools/h5diff/Makefile.in
M hdf5_1_8/tools/lib/Makefile.in
M hdf5_1_8/tools/h5copy/Makefile.in
M hdf5_1_8/tools/h5import/Makefile.in
M hdf5_1_8/tools/h5stat/Makefile.in
M hdf5_1_8/tools/h5ls/Makefile.in
M hdf5_1_8/hl/test/Makefile.in
M hdf5_1_8/hl/tools/Makefile.in
M hdf5_1_8/hl/tools/gif2h5/Makefile.in
M hdf5_1_8/hl/Makefile.in
M hdf5_1_8/hl/src/Makefile.in
M hdf5_1_8/hl/c++/test/Makefile.in
M hdf5_1_8/hl/c++/Makefile.in
M hdf5_1_8/hl/c++/src/Makefile.in
M hdf5_1_8/hl/c++/examples/Makefile.in
M hdf5_1_8/hl/fortran/test/Makefile.in
M hdf5_1_8/hl/fortran/Makefile.in
M hdf5_1_8/hl/fortran/src/Makefile.in
M hdf5_1_8/hl/fortran/examples/Makefile.in
M hdf5_1_8/hl/examples/Makefile.in
M hdf5_1_8/config/commence.am
M hdf5_1_8/MANIFEST
M hdf5_1_8/c++/test/Makefile.in
M hdf5_1_8/c++/Makefile.in
M hdf5_1_8/c++/src/Makefile.in
M hdf5_1_8/c++/examples/Makefile.in
M hdf5_1_8/bin/ltmain.sh
M hdf5_1_8/bin/reconfigure
M hdf5_1_8/perform/Makefile.in
M hdf5_1_8/fortran/test/Makefile.in
M hdf5_1_8/fortran/testpar/Makefile.in
M hdf5_1_8/fortran/Makefile.in
M hdf5_1_8/fortran/src/Makefile.in
M hdf5_1_8/fortran/examples/Makefile.in
M hdf5_1_8/aclocal.m4
M hdf5_1_8/examples/Makefile.in
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Corrected use/name of source folder aliases.
Duplicated FindMPI.cmake so that non-c++ compiler is found first (recommemded commands did not work).
Bring r19325 from trunk
Tested: local linux with mpich
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Tested with h5 committest on amani, jam, heiwa and linew.
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Tested: Local Linux
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/NODEFAULTLIB:MSVCRT
Added VERSION vars for inclusion into auto snapshot version update script
Tested windows
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developers recommendations. (r18996)
Tested: local linux
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Tested: local linux
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Bring r18915 from trunk to 1.8 branch:
Clean up a couple of compiler warnings (in Windows).
Tested on:
Mac OS X/32 10.6.3 (amazon) w/debug
(too minor to require h5committest)
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windows intel fortran case.
Duplicated windows intel fortran flag block for hl/fortran
Tested: windows
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- Add an install rule to copy compiled fortran module files
- Only build the xlatefile utility if testing and tools are enabled
- Don't do MPI HAVE_XXX checks until MPI_FOUND is true
- Install needs H5version.h & H5overflow.h to be copied
- Add debug information flags to debug compile and link lines for win32 Intel compiler
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Tested: local linux and Windows
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Updated RELEASE.txt file accordingly.
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configure.in to add compiler version information for fortran and C++ in the settings file and the configure output for our common compilers on linux, solaris, and mac(gnu only).
Tested: amani, jam, linew (h5committest) and with configure on these machines and tejeda.
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scripts are installed with the examples, and there is one script to run the scripts for all hl examples and another to run the scripts for all the examples.
Tested: amani, jam, linew (h5committest).
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DESTDIR=<install directory> install, installcheck and uninstall is supported for installing examples, since they are now installed as part of make install. This was necessary for rpmbuilds, but should also be supported otherwise.
Tested: amani, jam, linew with committest, rpmbuild on jam and amani.
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Tested: Local linux
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Improve configure's large-file support control.
Description:
Modified configure to now attempt to add defines necessary for
supporting largefiles on all systems, instead of solely on linux. This
is in response to user requests to enable largefile support on Solaris
by default, as well as to give extra control on AIX (instead of just
jamming the necessary flag into the config files).
The old --enable-linux-lfs flag is being deprecated in favor of the
--enable-largefile flag (enabled by default), which can be used on all
platforms. --disable-linux-lfs can still be used to disable largefile
support (on linux) when the --enable-largefile flag is not specified.
On systems where large files cannot be supported in this manner,
configure will report as such.
Tested:
h5committest
AIX (NCSA's blue_print machine)
duty, liberty, and linew.
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Added the configure option --enable-h5dump-packed-bits for the h5dump
optional feature.
Tested:
Jam (default and --disable-h5dump-packed-bits).
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incorrect code to install scripts to run examples. Correct code to install the scripts will be checked in later.
Tested on amani and talwit using daily test shell.
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install-examples will still install example files and make install will also install them.
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Autotool Upgrade / Libtool Bug Fix
Description:
Updated autotools referenced in bin/reconfigure as follows:
Autoconf 2.64 --> Autoconf 2.65
Automake 1.11 --> Automake 1.11.1
Libtool 2.2.6a --> Libtool 2.2.6b-mcg
The referenced libtool version is a custom version of 2.2.6b. It
has been tweaked to fix a bug in libtool that occurs
when using PGI 10.0 compilers. A check incorrectly categorizes
the C++ compiler as version 1.0 instead of 10.0, and the link
line is subsequently set up incorrectly and fails to compile.
A patch has been made available and will be included in the next
release of libtool, but in the meantime I've applied the patch to a custom
installation as indicated above. This bin/reconfigure now references
the custom installation, and the resulting configure script will correctly
categorize the PGI 10.0 C++ compiler.
Ran bin/reconfigure to regenerate configure and makefiles.
Tested:
jam and amani with PGI 10.0 compilers.
h5committest
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Merged Fortran changes from the trunk into the branch
svn merge -r 18098:18556 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran
Tested: jam (intel)
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Bring r18212 from trunk to 1.8 branch:
Bring revisions from Coverity fixing branch to trunk:
r18184:
Fixed Coverity issue 373. Allocated memory freed in line 762 in case of error.
r18185:
Fixed Coverity issues 357 & 358. Added check for NULL pointer before use.
r18186:
Fix coverity item 65. Added code to h5unjam to correctly handle failures in
read() and write, and also to correctly handle writes that write less than
requested.
r18187:
Fix coverity items 115 and 116. Added code to H5Tenum.c to correctly close
opened datatypes in case of failure.
r18188:
Fixed Coverity issue 46. Check that dataset->shared is not null when freeing
memory after error.
r18190:
Fix coverity item 95. Added code to H5T_create_vlen to correctly close
allocated datatype in case of failure.
r18191:
Fixed Coverity error 59. Checked sfirst for -1 value before use in line 10533.
r18192:
Fix Coverity items 121 and 28
Added Asserts:
121: assert that all dimensions of count have values greater than zero.
28: assert curr_span pointer is not null before dereference.
Note: still need too add checks in hyperslab APIs that fail
when count values are zero, and appropriate tests.
r18194:
Fixed Coverity issues 61 & 62. Checked variable snpoints for value < 0 in line
218.
Tested on:
Mac OS X/32 10.6.2 (amazon) w/debug & production
(already daily tested on coverity branch)
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Trim trailing whitespace from source code files, with following command:
find . \( -name "*.[ch]" -or -name "*.cpp" -or -name "*.f90" \) -print |xargs -n 1 sed -i "" 's/[[:blank:]]*$//'
Tested on:
None - eyeballed only
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Bring r18157 from trunk to 1.8 branch:
Bring back changes from Coverity session on 1/15/10:
r18111:
Fix Coverity issue #130: make certain that the cache gets freed on error.
r18112:
Fix Coverity issue #43 by making cache testing calls protected by 'pass'
variable.
r18113:
Fix Coverity issue #129 by releasing the cache on error.
r18115:
Coverity #45 fix: patched an error check in H5Screate_simple to prevent future dereferencing of a NULL point.
Added a verification in test/th5s.c.
r18116:
Fix Coverity issue #43 by releasing cache on error.
r18117:
Coverity #362,363 by adding HGOTO_DONE, freeing allocations and associated changes. REsolving coverity results #364-368, 369, 370-372, 377, 379, and 380.
r18118:
Fix Coverity issue #42: assert that cache & test specification pointer are
valid.
r18122:
Coverity #362,363 by adding HGOTO_DONE and freeing allocations. This also takes care of #357,358.
r18123:
Coverity #359-361, 373-376: Added HGOTO_DONE(FAIL) statement after checking allocation for NULL. Verified allocation is freed in done block.
r18128:
Fixed coverity issue #10 -- removed dead code.
Tested on:
Mac OS X/32 10.6.2 (amazon)
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The mixed use of RUNTEST (original) and RUNTESTS (new) caused
confusion. E.g., the timings in test/ was still using the old
$RUNTEST. It made more sense to use $RUNTEST which is used
by the dejagnu feature of automake. So, I changed all
$RUNTEST or $RUNTESTS to $RUNEXEC.
config/commence.am & config/conclude.am are the two files
that got changes. Also fixed an error in test/Makefile.am.
The rest are changed by bin/reconfigure.
Tested: h5committested.
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Merged changes from trunk/fortran into the branch used:
svn merge -r 17682:18098 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran
Tested on: jam (intel)
amani (pgi)
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Description:
Fixed exit code (sometimes return code in Main) to follow the HDF5 standards.
Tested:
Jam, both serial and parallel.
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h5cc link-line reordering
Description:
Re-ordered flags in h5cc such that LDFLAGS appears after hdf5 library
include path. This is to ensure third party library locations don't
interfere with locating the correct version of hdf5 library.
I have Elena's permission to bring into 1.8 before anything else (so it
can be tested via daily tests ASAP), though the hope is to propagate
everywhere.
Tested:
quickly by hand on jam, daily tests should catch elsewhere.
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Updated RELEASE.txt and HISTORY.txt file accordingly.
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Merged changes from trunk/fortran into the branch used:
svn merge -r 17517:17682 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran
Tested on:
amani: pgi compiler
intel compiler (11.0)
linew
jam: gcc/gfortran (4.3)
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Merge from Trunk
Description:
Merging all of my CFLAGS-related changes from trunk to 1.8
This includes revision #s: 17616, 17625, 17627, 17639, and 17643.
Tested:
h5committest and some additional checks on our FreeBSD as well
as NCSA's machines.
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Merged changes in the trunk/fortran to 1.8.
svn merge -r 17485:17517 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran
Brings bugfixes into 1.8 for:
Bug [1471] - H5Tset_order_f missing constant option H5T_ORDER_NONE
Tested: smirom (ifort)
smirom (pgi)
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Merged changes in the trunk/fortran to 1.8.
svn merge -r 17222:17485 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran
Brings bugfixes into 1.8 for:
Bug [1652] h5lget_info_by_idx_f missing/broken functionality
and
Bug [1653] H5_LINK_* values defined in H5f90global.f90 are incorrect
Tested: jam (ifort)
smirom (gfortran)
linew (f90)
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Updating autotools
Description:
Bring revisions 17345 and 17357 from trunk to 1.8, specifically:
- Automake upgraded to 1.11
- Autoconf upgraded to 2.64
- bin/reconfigure script edited to use new versions (on jam), and
run to generate new configure script and Makefile.in's.
- configure.in script edited to add "_cv_" to all AC_CACHE_VAL strings
(in order to comply with new autoconf standard).
- bin/install-sh script replaced with new version as provided
by automake.
Tested:
- All issues on trunk were resolved, so only tested on jam and linew. Any
other outliers should be caught by daily tests.
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svn merge -r 17164:17222 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran
tested: smirom (ifort, pgf90, gfortran, g95), linew
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Removed debugging print statements.
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svn merge -r 16797:17050 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran
platforms tested: smirom: ifort, icc
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Added debug statements in order to investigate intermittent failing of test on honest4 at NCSA, remove after debugging.
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tar ball
for remote testing.
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If the AR command has embedded shell separators such as the case of
"AR = ar -X 64", $AR ends up as a blank.
Solution:
Put quotes around the command substitution string to protect against embedded
separators. Applied the same to both AR and RANLIB assignments.
Tested:
At Up (AIX 5.3) only because that was where I discovered the error
when AR is ar -X 64
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Embed the content of libhdf5.settings into the hdf5 executables so that an
"orphaned" executables can display (via the Unix strings command, for example)
the library settings used to build the executables.
This is a prototype implementation. Much improvement is needed.
configure.in:
Added the --disable-embedded-libinfo option to disable this feature.
configure:
src/H5config.h.in:
Generated by autotools like automake.
src/H5detect.c:
Implement insert_libhdf5_settings() to insert the contents of
libhdf5.settings into the library as an extern string variable so that it
is included in all HDF5 executable. Much improvement is needed.
fortran/src/Makefile.in:
Auto-generated by bin/reconfigure. (i.e., I did make any changes to cause
its direct regeneration).
Tested:
Jam serial, using default and --disable-embedded-libinfo, configure options.
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svn merge -r 16781:16797 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran
fixes problems with H5D_chunch_cache_* variable lengths
platforms tested: smirom: ifort, pgf90
jam : f95
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- Updated bin/reconfigure to use latest version of automake (1.10.2).
Regenerated Makefile.in's by running bin/reconfigure.
- Added libtool version numbers to c++, fortran, hl, hl c++, and hl fortran
libraries.
Tested:
jam, liberty, smirom
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Merged the changes from the trunk/fortran into the branch:
used:
svn merge -r 16362:16781 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran
Platforms tested: smirom (pgf90, ifort)
linew
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