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* [svn-r18773] Add files to support building library with CMakeAllen Byrne2010-05-124-0/+607
| | | | Tested: Local linux
* [svn-r18710] Purpose:Mike McGreevy2010-05-055-5/+5
| | | | | | | | | | | | | | | | | | | | | | | | | | Improve configure's large-file support control. Description: Modified configure to now attempt to add defines necessary for supporting largefiles on all systems, instead of solely on linux. This is in response to user requests to enable largefile support on Solaris by default, as well as to give extra control on AIX (instead of just jamming the necessary flag into the config files). The old --enable-linux-lfs flag is being deprecated in favor of the --enable-largefile flag (enabled by default), which can be used on all platforms. --disable-linux-lfs can still be used to disable largefile support (on linux) when the --enable-largefile flag is not specified. On systems where large files cannot be supported in this manner, configure will report as such. Tested: h5committest AIX (NCSA's blue_print machine) duty, liberty, and linew.
* [svn-r18701] ID 1853:Albert Cheng2010-05-045-0/+5
| | | | | | | | Added the configure option --enable-h5dump-packed-bits for the h5dump optional feature. Tested: Jam (default and --disable-h5dump-packed-bits).
* [svn-r18694] Correct missing line (fi) in revision 18680 and remove ↵Larry Knox2010-05-031-4/+1
| | | | | | incorrect code to install scripts to run examples. Correct code to install the scripts will be checked in later. Tested on amani and talwit using daily test shell.
* [svn-r18688] Snapshot version 1.8 release 4 (snap20)HDF Tester2010-05-031-1/+3
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* [svn-r18680] Added running make install-examples to make install. Make ↵Larry Knox2010-04-302-3/+4
| | | | install-examples will still install example files and make install will also install them.
* [svn-r18580] Purpose:Mike McGreevy2010-04-155-7/+7
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Autotool Upgrade / Libtool Bug Fix Description: Updated autotools referenced in bin/reconfigure as follows: Autoconf 2.64 --> Autoconf 2.65 Automake 1.11 --> Automake 1.11.1 Libtool 2.2.6a --> Libtool 2.2.6b-mcg The referenced libtool version is a custom version of 2.2.6b. It has been tweaked to fix a bug in libtool that occurs when using PGI 10.0 compilers. A check incorrectly categorizes the C++ compiler as version 1.0 instead of 10.0, and the link line is subsequently set up incorrectly and fails to compile. A patch has been made available and will be included in the next release of libtool, but in the meantime I've applied the patch to a custom installation as indicated above. This bin/reconfigure now references the custom installation, and the resulting configure script will correctly categorize the PGI 10.0 C++ compiler. Ran bin/reconfigure to regenerate configure and makefiles. Tested: jam and amani with PGI 10.0 compilers. h5committest
* [svn-r18557] Description:Scot Breitenfeld2010-04-156-8/+24
| | | | | | | | Merged Fortran changes from the trunk into the branch svn merge -r 18098:18556 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran Tested: jam (intel)
* [svn-r18213] Description:Quincey Koziol2010-02-051-8/+10
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r18212 from trunk to 1.8 branch: Bring revisions from Coverity fixing branch to trunk: r18184: Fixed Coverity issue 373. Allocated memory freed in line 762 in case of error. r18185: Fixed Coverity issues 357 & 358. Added check for NULL pointer before use. r18186: Fix coverity item 65. Added code to h5unjam to correctly handle failures in read() and write, and also to correctly handle writes that write less than requested. r18187: Fix coverity items 115 and 116. Added code to H5Tenum.c to correctly close opened datatypes in case of failure. r18188: Fixed Coverity issue 46. Check that dataset->shared is not null when freeing memory after error. r18190: Fix coverity item 95. Added code to H5T_create_vlen to correctly close allocated datatype in case of failure. r18191: Fixed Coverity error 59. Checked sfirst for -1 value before use in line 10533. r18192: Fix Coverity items 121 and 28 Added Asserts: 121: assert that all dimensions of count have values greater than zero. 28: assert curr_span pointer is not null before dereference. Note: still need too add checks in hyperslab APIs that fail when count values are zero, and appropriate tests. r18194: Fixed Coverity issues 61 & 62. Checked variable snpoints for value < 0 in line 218. Tested on: Mac OS X/32 10.6.2 (amazon) w/debug & production (already daily tested on coverity branch)
* [svn-r18198] Description:Quincey Koziol2010-01-3069-8034/+8034
| | | | | | | | | Trim trailing whitespace from source code files, with following command: find . \( -name "*.[ch]" -or -name "*.cpp" -or -name "*.f90" \) -print |xargs -n 1 sed -i "" 's/[[:blank:]]*$//' Tested on: None - eyeballed only
* [svn-r18158] Description:Quincey Koziol2010-01-236-566/+485
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r18157 from trunk to 1.8 branch: Bring back changes from Coverity session on 1/15/10: r18111: Fix Coverity issue #130: make certain that the cache gets freed on error. r18112: Fix Coverity issue #43 by making cache testing calls protected by 'pass' variable. r18113: Fix Coverity issue #129 by releasing the cache on error. r18115: Coverity #45 fix: patched an error check in H5Screate_simple to prevent future dereferencing of a NULL point. Added a verification in test/th5s.c. r18116: Fix Coverity issue #43 by releasing cache on error. r18117: Coverity #362,363 by adding HGOTO_DONE, freeing allocations and associated changes. REsolving coverity results #364-368, 369, 370-372, 377, 379, and 380. r18118: Fix Coverity issue #42: assert that cache & test specification pointer are valid. r18122: Coverity #362,363 by adding HGOTO_DONE and freeing allocations. This also takes care of #357,358. r18123: Coverity #359-361, 373-376: Added HGOTO_DONE(FAIL) statement after checking allocation for NULL. Verified allocation is freed in done block. r18128: Fixed coverity issue #10 -- removed dead code. Tested on: Mac OS X/32 10.6.2 (amazon)
* [svn-r18106] bug 1673:Albert Cheng2010-01-125-20/+20
| | | | | | | | | | | | | | The mixed use of RUNTEST (original) and RUNTESTS (new) caused confusion. E.g., the timings in test/ was still using the old $RUNTEST. It made more sense to use $RUNTEST which is used by the dejagnu feature of automake. So, I changed all $RUNTEST or $RUNTESTS to $RUNEXEC. config/commence.am & config/conclude.am are the two files that got changes. Also fixed an error in test/Makefile.am. The rest are changed by bin/reconfigure. Tested: h5committested.
* [svn-r18099] Description:Scot Breitenfeld2010-01-084-55/+68
| | | | | | | | | Merged changes from trunk/fortran into the branch used: svn merge -r 17682:18098 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran Tested on: jam (intel) amani (pgi)
* [svn-r18056] Bug fix: 1192Albert Cheng2009-12-262-6/+16
| | | | | | | | Description: Fixed exit code (sometimes return code in Main) to follow the HDF5 standards. Tested: Jam, both serial and parallel.
* [svn-r17773] Purpose:Mike McGreevy2009-10-281-1/+1
| | | | | | | | | | | | | | | | | | h5cc link-line reordering Description: Re-ordered flags in h5cc such that LDFLAGS appears after hdf5 library include path. This is to ensure third party library locations don't interfere with locating the correct version of hdf5 library. I have Elena's permission to bring into 1.8 before anything else (so it can be tested via daily tests ASAP), though the hope is to propagate everywhere. Tested: quickly by hand on jam, daily tests should catch elsewhere.
* [svn-r17709] Maintenance: Changed version number to 1.8.4-snap0Elena Pourmal2009-10-211-1/+1
| | | | Updated RELEASE.txt and HISTORY.txt file accordingly.
* [svn-r17683] Description:Scot Breitenfeld2009-10-191-3/+11
| | | | | | | | | | | | | | | Merged changes from trunk/fortran into the branch used: svn merge -r 17517:17682 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran Tested on: amani: pgi compiler intel compiler (11.0) linew jam: gcc/gfortran (4.3)
* [svn-r17645] Purpose:Mike McGreevy2009-10-159-69/+105
| | | | | | | | | | | | | | | Merge from Trunk Description: Merging all of my CFLAGS-related changes from trunk to 1.8 This includes revision #s: 17616, 17625, 17627, 17639, and 17643. Tested: h5committest and some additional checks on our FreeBSD as well as NCSA's machines.
* [svn-r17519] Description:Scot Breitenfeld2009-09-243-46/+55
| | | | | | | | | | | | | | Merged changes in the trunk/fortran to 1.8. svn merge -r 17485:17517 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran Brings bugfixes into 1.8 for: Bug [1471] - H5Tset_order_f missing constant option H5T_ORDER_NONE Tested: smirom (ifort) smirom (pgi)
* [svn-r17486] Description:Scot Breitenfeld2009-09-178-41/+170
| | | | | | | | | | | | | | | | | Merged changes in the trunk/fortran to 1.8. svn merge -r 17222:17485 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran Brings bugfixes into 1.8 for: Bug [1652] h5lget_info_by_idx_f missing/broken functionality and Bug [1653] H5_LINK_* values defined in H5f90global.f90 are incorrect Tested: jam (ifort) smirom (gfortran) linew (f90)
* [svn-r17439] Purpose:Mike McGreevy2009-08-315-192/+407
| | | | | | | | | | | | | | | | | | | | | | Updating autotools Description: Bring revisions 17345 and 17357 from trunk to 1.8, specifically: - Automake upgraded to 1.11 - Autoconf upgraded to 2.64 - bin/reconfigure script edited to use new versions (on jam), and run to generate new configure script and Makefile.in's. - configure.in script edited to add "_cv_" to all AC_CACHE_VAL strings (in order to comply with new autoconf standard). - bin/install-sh script replaced with new version as provided by automake. Tested: - All issues on trunk were resolved, so only tested on jam and linew. Any other outliers should be caught by daily tests.
* [svn-r17223] Merged the fortran trunk into the branch:Scot Breitenfeld2009-07-223-5/+4
| | | | | | svn merge -r 17164:17222 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran tested: smirom (ifort, pgf90, gfortran, g95), linew
* [svn-r17086] Description:Scot Breitenfeld2009-06-182-11/+2
| | | | Removed debugging print statements.
* [svn-r17051] merge changes from the trunk into the branchScot Breitenfeld2009-06-151-7/+7
| | | | | | | svn merge -r 16797:17050 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran platforms tested: smirom: ifort, icc
* [svn-r17023] Description:Scot Breitenfeld2009-06-102-1/+11
| | | | Added debug statements in order to investigate intermittent failing of test on honest4 at NCSA, remove after debugging.
* [svn-r16853] Maintenance: Changed version number to 1.8.3-pre1 and created a ↵Elena Pourmal2009-04-241-1/+1
| | | | | | tar ball for remote testing.
* [svn-r16838] Bug fix:Albert Cheng2009-04-221-2/+2
| | | | | | | | | | | | | If the AR command has embedded shell separators such as the case of "AR = ar -X 64", $AR ends up as a blank. Solution: Put quotes around the command substitution string to protect against embedded separators. Applied the same to both AR and RANLIB assignments. Tested: At Up (AIX 5.3) only because that was where I discovered the error when AR is ar -X 64
* [svn-r16813] New feature(Bug 230):Albert Cheng2009-04-201-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | Embed the content of libhdf5.settings into the hdf5 executables so that an "orphaned" executables can display (via the Unix strings command, for example) the library settings used to build the executables. This is a prototype implementation. Much improvement is needed. configure.in: Added the --disable-embedded-libinfo option to disable this feature. configure: src/H5config.h.in: Generated by autotools like automake. src/H5detect.c: Implement insert_libhdf5_settings() to insert the contents of libhdf5.settings into the library as an extern string variable so that it is included in all HDF5 executable. Much improvement is needed. fortran/src/Makefile.in: Auto-generated by bin/reconfigure. (i.e., I did make any changes to cause its direct regeneration). Tested: Jam serial, using default and --disable-embedded-libinfo, configure options.
* [svn-r16801] merge changes from the trunk into the branchScot Breitenfeld2009-04-205-13/+18
| | | | | | | | | svn merge -r 16781:16797 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran fixes problems with H5D_chunch_cache_* variable lengths platforms tested: smirom: ifort, pgf90 jam : f95
* [svn-r16793] Description:Mike McGreevy2009-04-206-22/+52
| | | | | | | | | | | | - Updated bin/reconfigure to use latest version of automake (1.10.2). Regenerated Makefile.in's by running bin/reconfigure. - Added libtool version numbers to c++, fortran, hl, hl c++, and hl fortran libraries. Tested: jam, liberty, smirom
* [svn-r16782] Description:Scot Breitenfeld2009-04-1714-9/+656
| | | | | | | | | | | | Merged the changes from the trunk/fortran into the branch: used: svn merge -r 16362:16781 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran Platforms tested: smirom (pgf90, ifort) linew
* [svn-r16680] Description:Scot Breitenfeld2009-04-0716-1501/+1501
| | | | | | | | | Fixed warnings from absoft's compiler for !DEC$ statements. Solution: There should not be a space after !DEC$ statements, removed the spaces. Platforms tested: Jam with gcc and f95
* [svn-r16562] Purpose:Mike McGreevy2009-03-105-15/+15
| | | | | | | | | | | | | | | | | | Bug Fix Description: Fixing BZ #1381. The --includedir=DIR configure option, which is used to spceify installation location of C header files, did not work correctly as the path was hard-coded into config/commence.am. I'm presuming this is because an older version of automake didn't know where to put C header files. In any case, removing this line now defaults the includedir to the same directory that it is currently hard-coded to, and also fixes the configure flag which allows for customization of this value. Tested: jam, liberty
* [svn-r16519] merge 16518 from trunkPedro Vicente Nunes2009-02-265-0/+5
| | | | | | have 2 expected outputs for 2 h5ls runs depending if run on a big or little endian machine. Configure.in was modified to export a variable carrying endianess information to testh5ls.sh. This script then compares the current run with 2 expected outputs, one for a big-endian machine (linew was used to generate the output), other for little endian (jam was used to generate the output) the way h5ls prints types, it starts searching for NATIVE types first. One solution would be h5ls not to detect these native types, using for example the same print datatype function that h5dump does, that would make the output look the same on all platforms ("32-bit little-endian integer" would be printed instead). Drawback, this "native" information would not be available. Other solution is to have not one but 2 expected outputs and make the shell script detect the endianess and compare with one output or other tested: jam, linew
* [svn-r16490] Fixed bug #1459 by eliminating the macro long_long and ↵Allen Byrne2009-02-182-13/+13
| | | | | | | | | replacing all instances with long long. Tested: h5comittest fedora 10 x64 XP32, VNET
* [svn-r16363] Description:Scot Breitenfeld2009-01-271-5/+13
| | | | | | | | Merged changes from the trunk into the branch. Used the command: svn merge -r 16197:16362 http://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran Platforms tested: smirom, liberty
* [svn-r16341] Description:Frank Baker2009-01-221-1/+1
| | | | | | Changed 'THG' to 'The HDF Group' in various HDF5 source files, most of which are <subdirectory>/COPYING. -- Closes Bugzilla entry 1403.
* [svn-r16304] Description:Scot Breitenfeld2009-01-131-0/+2
| | | | | | | | | added: !DEC$ATTRIBUTES reference :: for character strings being passed in to C to fix bug in VMS for functions h5sdecode_f and h5sencode_f.
* [svn-r16263] Description:Scot Breitenfeld2009-01-051-1/+1
| | | | | | | | added missing reference in h5lget_name_by_idx_f: !DEC$ATTRIBUTES reference :: for character strings being passed in to C to fix bug in VMS.
* [svn-r16234] Description:Scot Breitenfeld2008-12-301-2/+0
| | | | | | | Cosmetic changes, Also tested -r16232 on: Jam (intel 10.1) Smirom (intel 10.1)
* [svn-r16232] Description:Scot Breitenfeld2008-12-302-13/+17
| | | | Added chunk property to the data set because changes H5Dset_extent now require/check the the data set is chunked.
* [svn-r16197] Maintenance: Merged trunk into the hdf5_1_8 branchScot Breitenfeld2008-12-1522-1040/+1522
| | | | (used svn merge -r 15741:16196 http://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran).
* [svn-r15917] Bug fix: #933Albert Cheng2008-10-211-18/+0
| | | | | | This file is no longer needed since it is not installed any more. Tested: kagiso with fortran and C++.
* [svn-r15912] Bug fix: #933Albert Cheng2008-10-212-49/+16
| | | | | | | The information of libhdf5_fortran.settings are all included in libhdf5.settings now. Remove it from the source. Tested: kagiso with fortran and C++.
* [svn-r15898] Purpose: Bug FixMike McGreevy2008-10-175-30/+5
| | | | | | | | | | | | | | | Description: Libtool wasn't working on linew because the script was not working with the Solaris Bourne shell. Libtool has built- in detection to ensure that it uses an appropriate shell, but our config/commence.am was hard coding this shell to be /bin/sh. Removing this line allows the shell to be picked up by configure, thus allowing libtool to use the correct shell on linew (bash). This was initially added to correct for a problem on an old machine (janus), so shoudn't be needed for machines we currently support. Tested: full make check install on kagiso and linew, compile only on smirom, duty, and liberty.
* [svn-r15881] Purpose: Bug Fixes, Libtool UpgradeMike McGreevy2008-10-155-0/+25
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: 1) configure now sets LD_LIBRARY_PATH before checking for presence of SZIP encoder, so user does not need to set this. The path is then saved and sent to Makefiles, and used when "make check-install" is invoked, so user doesn't need to set this manually. 2) Upgraded libtool to version 2.2.6a 3) Rearranged tools build order as h5dump depends on existence of h5diff and h5import. Since h5dump is a sister directory as opposed to a parent of either, it doesn't know about the build rules of these tools, so setting any sort of explicit dependency confuses automake as it won't know how to build the tools. Instead, setting CONFIG = ordered forces an in-order traversal of each tools subdirectory. (without it will also traverse in order by default, but this should prevent gmake's -j option from jumping ahead as well). 'make check install' should now be able to be invoked after 'configure' without causing a dependency failure. 4) Removed H5_HAVE_LARGE_HSIZET macro from vms/src/h5pubconf.h, as this macro has now been out of the code for some time. (vms pubconf needs to be updated manually, which is why it was still hanging around). Tested: kagiso, smirom, liberty Note: h5diff looks to be causing failures in h5copy and h5dump tools tests, though these were present before any of my changes. My changes only affect build order and configuration setup, and shouldn't prevent fixes for these failures coming in after this checkin. Other than these, tests pass fine.
* [svn-r15812] Bug fix: #1090Albert Cheng2008-10-082-8/+8
| | | | | | | | | | | The custom rules for installing h5cc, h5fc, and the fortran modules in fortran and in hl/fortran don't use $(DESTDIR). Added it to all those rules. Tested: kagiso both serial and parallel with fortran and cxx enabled. Tested by: make install make DESTDIR=/tmp/acheng install diff -r /tmp/acheng/.../hdf5 hdf5
* [svn-r15742] Maintenance: Merged new Fortran Features and tests from trunk ↵Scot Breitenfeld2008-10-019-21/+124
| | | | | | | into hdf5_1_8 branch (used svn merge -r 14941:15740 http://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran command).
* [svn-r15727] Scot Breitenfeld2008-09-3035-5712/+4528
| | | | | | Maintenance: Merged new Fortran Features and tests from trunk into hdf5_1_8 branch (used svn merge -r 14941:14525 http://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran command).
* [svn-r15707] I changed the return values of H5Fget_obj_ids and ↵Raymond Lu2008-09-264-19/+43
| | | | | | | | H5Fget_obj_count to ssize_t and modified C++ and Fortran API functions. This is for bug #1245. Tested on kagiso - I've tested the same change using h5committest.
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