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* [svn-r21421] Merged the Fortran 2003 changes from the trunk into the 1.8 ↵Scot Breitenfeld2011-09-27185-24505/+61355
| | | | | | | | | | | branch, used: svn merge -r 20506:21414 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran Tested: jam (gnu, intel, pgi compilers) Also merged effected non-Fortran files: svn merge -r21247:r21248 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/src/libhdf5.settings.in
* [svn-r21336] Synchronize cmake files with tested commits from trunkAllen Byrne2011-08-301-0/+530
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* [svn-r21299] Add fortran library depends to test fortran library buildAllen Byrne2011-08-231-2/+6
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* [svn-r21277] Bug fix: HDFFV-7641Albert Cheng2011-08-221-2/+2
| | | | | | | Corrected mismatched function name typo of h5pget_dxpl_mpio_c and h5pfill_value_defined_c. Tested: Jam. (Note: Allen has fixed trunk version of these already.)
* [svn-r21217] Change CTEST_NAME to HDF5 - the project nameAllen Byrne2011-08-101-18/+13
| | | | | | | Implement InitOnceExecuteOnce - HDFFV-5929 Change command to generate output source files Tested: local linux, windows
* [svn-r21044] Purpose:Mike McGreevy2011-06-285-5/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Fix HDFFV-7592 "Remove PACKEDBITS option from autotools files" Description: The code for h5dump's packed bits feature was conditionally compiled in via this option during its 'beta' release in 1.8.5. Now that the feature is fully supported, h5dump has since been changed to always compile the packed bits code (having removed the #ifdef H5_HAVE_H5DUMP_PACKED_BITS checks), so this option in configure is no longer needed. This commit removes the --enable-h5dump-packed-bits configure option, including the help summary from './configure --help' and the libhdf5.settings output summary, the PACKED_BITS Makefile variable, and the definition of H5_HAVE_H5DUMP_PACKED_BITS define in appropriate pubconf header files (which has already been removed from use in source code as of r20722). Note that this option was never added to the trunk, thus this commit only need occur on the 1.8 branch. Tested: - Configure output, help, & summary verified on jam - h5committested
* [svn-r20719] Merge changes to scripts to run installed examples from hdf5 ↵Larry Knox2011-05-041-2/+2
| | | | 1.8.7 r 20718. The default prefix in the scripts will use the compile scripts in the installed bin directory.
* [svn-r20574] Bump soname interface number. This should have been bumpedMike McGreevy2011-04-201-2/+2
| | | | | | in 1.8.6 when its API was changed, but since it wasn't I'm manually fixing up these numbers in 1.8 and 1.8.7 branches for the time being.
* [svn-r20565] Update 1.8 branch version to 1.8.8-snap0Mike McGreevy2011-04-201-1/+1
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* [svn-r20525] Description:Mike McGreevy2011-04-155-60/+210
| | | | | | | | Merge revisions 20475, 20502, and 20504 from trunk to 1.8 branch. Tested: Tested on jam, fred, bangan (CYGWIN), and h5committested.
* [svn-r20507] Merged the changes in 'fortran' from the trunk into branch, used:Scot Breitenfeld2011-04-152-1/+7
| | | | | | svn merge -r 18556:20506 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran Tested: jam (gnu, intel, pgi compilers)
* [svn-r20489] Bug 1386 - allow dimension size to be zero even though it isn't ↵Raymond Lu2011-04-131-1/+7
| | | | | | | | | | | | | | | | unlimited. I brought the changes from the trunk as below: 1. I added test cases for contiguous, compact, and chunked, and external storage datasets, and also attribute. The test includes dataspace selections. 2. I added a test case of extending dataset of zero dimension size and shrinking back to zero dimension size. 3. I updated the Makefile to include the new data file to be cleaned up. 4. The dataspace code has another bug - when the maximal dimension isn't passed in for H5Sset_extent_simple, it is supposed to be same as the dimension. The current library sets NULL to it. I corrected it and added a test case to it. 5. I corrected the tests of Fortran and C++ for the problem in point 3. Tested on jam, heiwa, and amani.
* [svn-r20479] Fixed issue HDFFV-5866 (BZ 2156). Changed scripts to run ↵Larry Knox2011-04-121-4/+18
| | | | | | examples to use specific names for compiled executable files instead of a.out, which did not work on Cywin as it produces a.exe by default. Removed issue from known problems section of RELEASE.txt. Tested with h5committest and Cygwin 1.7.8 on Windows 7.
* [svn-r20370] Correct fflush tests dependencies (bring change from trunk)Allen Byrne2011-03-291-0/+1
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* [svn-r20301] brought revisions 19868:20300 from the 1.8.6_vms branch to the ↵Raymond Lu2011-03-231-0/+6
| | | | 1.8 branch
* [svn-r20157] Bring CMake changes to branch up to r20156 from trunkAllen Byrne2011-02-253-7/+7
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* [svn-r20128] Add fortran mod folder to INCLUDE_DIRS for gfortran 4.2.x.Allen Byrne2011-02-211-1/+1
| | | | | | Add test dependicies to correct the order of tests - cmake 2.8.4 bug - but also will improve cmake parallel testing. Tested: local linux, jam
* [svn-r20080] Remove obsolete lines (commented) after correcting Fortran ↵Allen Byrne2011-02-101-5/+0
| | | | | | handling in CMake files Tested: local: linux
* [svn-r20079] Correct Fortran handling in CMake filesAllen Byrne2011-02-105-154/+6
| | | | Tested: local: linux
* [svn-r20062] Description:Quincey Koziol2011-02-082-22/+24
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r20061 from trunk to 1.8 branch: Bring changes from Coverity branch to trunk: r19930: Fix memory leaks involving VL attributes in h5repack and h5diff. The buffers in copy_attr and diff_attr were not checked for the presence of a vlen before being freed, and vlen storage was never reclaimed. Added checks and calls to H5D_vlen_reclaim(). r19933: Purpose: Fix memory leak in H5L_move_cb() Description: H5L_move_cb copied the source link using H5O_msg_copy() but freed it manually using H5MM_xfree(). Since H5O_link_copy allocates the link using H5FL_MALLOC, this causes the link to be allocated from the free list but is never put back on the free list when it is freed. This prevents the link free list from shutting down properly. Modified H5L_move_cb() and H5L_move_dest_cb() to free the link properly using H5O_msg_free(). r19973: Fix resource leaks by freeing string created by HD5f2string r19974: Issue #345: Inialize buf variable to null Tested on: Mac OS X/32 10.6.6 (amazon) w/debug & production (h5committested on Coverity branch)
* [svn-r20034] Problem: A typo caused compilation to fail with gfortran 4.6 on ↵Elena Pourmal2011-02-031-3/+3
| | | | | | | | fred (Max OS X) Fixed. Platforms tested: fred and jam (minor change)
* [svn-r19913] Correct format of empty parameterAllen Byrne2011-01-052-2/+2
| | | | Tested: local linux
* [svn-r19911] Change how LINK_FLAGS for fortran are appended on Windows - ↵Allen Byrne2011-01-052-6/+8
| | | | | | correct for just shared libs bring r19910 from trunk
* [svn-r19908] Change how LINK_FLAGS for fortran are appended on WindowsAllen Byrne2011-01-054-15/+9
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* [svn-r19906] Windows: Correct how fortran links in CRT library. Also correct ↵Allen Byrne2011-01-044-15/+15
| | | | | | macro use for checking libtype. Tested: Windows
* [svn-r19871] Add tests for examples.Allen Byrne2010-12-031-0/+10
| | | | | | Bring r19870 from trunk Tested: local linux
* [svn-r19862] Updated libtool to version 2.4, autoconf to version 2.68, and ↵Larry Knox2010-12-015-0/+15
| | | | | | m4 to version 1.4.15. Tested with h5committest on amani, jam and heiwa.
* [svn-r19655] Description:Quincey Koziol2010-10-2110-240/+208
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r19654 from trunk to 1.8 branch: Bring Coverity revisions from branch back to trunk, and clean up some other misc. compiler warnings also. r19500: Fix coverity items 1446 and 1447. Moved up calls to memset in test_cont in ohdr.c so the test never tries to close uninitialized locations. r19501: Fix coverity items 1398-1445. Various uninitialized variable errors in fheap.c. r19502: Fixed coverity issue 579 and some additional warnings in the file as well. r19503: Bug fix: This fix addressed the "RESOURCE_LEAK" problems #789 and 790, run 26 r19504: minor mods to try to keep coverity from flagging false positives. r19505: Fixed coverity issues 566 - 571. Declared variables that are passed to functions that use them as arrays to be arrays of size 1. Tested on: Mac OS X/32 10.6.4 (amazon) w/debug, production & parallel (h5committested on coverity branch)
* [svn-r19529] Added line to config/examples.am to remove execute permission ↵Larry Knox2010-10-061-0/+1
| | | | | | from example source files that are installed in .../share/hdf5_examples/. This will address bugzilla #2025. Tested with h5committest on amani, heiwa, and jam.
* [svn-r19510] Improve CMake support for CYGWIN.Allen Byrne2010-10-044-55/+41
| | | | | | | | Correct script comment in testh5diff.sh Bring r19509 back from trunk Tested: Windows Cygwin
* [svn-r19451] Update version of 1.8 branch to HDF5 1.8.7-snap0Mike McGreevy2010-09-211-1/+1
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* [svn-r19442] Move $LIBS to just after $lib_objs in the link command line. ↵Larry Knox2010-09-201-7/+10
| | | | | | Otherwise the linker doesn't find the functions called by the program being compiled. $LIBS is ofr libraries specified by the compile script user. We don't currently have any tests checked in to do this. Tested with netCDF-4 and hdf5 on jam.
* [svn-r19438] Correct use of lib, include, bin in INSTALL commands to use ↵Allen Byrne2010-09-201-5/+5
| | | | | | proper variables. Tested: local linux
* [svn-r19421] Reorganize compile scripts h5cc.in, h5fc.in and h5c++.in to put ↵Larry Knox2010-09-171-6/+53
| | | | | | LDFLAGS in the correct place and to enable the script user to set and override CFLAGS, CPPFLAGS, CXXFLAGS, FFLAGS, LDFLAGS, and LIBS that take pprecedence over the library paths and compile flags from the hdf5 build. Tested with h5committest on amani, heiwa, and jam.
* [svn-r19408] In this revision the '/' after ${DESTDIR} wherever it occursLarry Knox2010-09-168-29/+83
| | | | | | | | | | | | | | | | | | | | has been removed. According to the official description of DESTDIR by Gnu at http://www.gnu.org/prep/standards/html_node/DESTDIR.html, DESTDIR is prepended to the normal and complete install path that it precedes for the purpose of installing in a temporary directory which is useful for building rpms and other packages. The '/' after ${DESTDIR} will be followed by another '/' at the beginning of the normal install path. When DESTDIR is empty the path then begins with '//', which is incorrect and causes problems at least for Cygwin. The change made in config/commence.am affects many Makefile.*s when bin/reconfigure is run. EXAMPLEDIRs had to be corrected individually. Also the scripts to run examples after they are installed have checks added to see that the fortran and c++ directories are present before trying to run the scripts in them. Tested with h5committest on amani, heiwa and jam.
* [svn-r19371] Updated autoconf to version 2.6.7, libtool to version 2.2.10, ↵Larry Knox2010-09-105-5/+5
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | and m4 to version 1.4.14. Also added m4 directory for m4 macros according to autoconf suggestion. Tested with h5committest on amani, jam, and heiwa, and on linew. -This line, and those below, will be ignored-- M hdf5_1_8/test/Makefile.in A hdf5_1_8/m4 AM hdf5_1_8/m4/ltsugar.m4 AM hdf5_1_8/m4/libtool.m4 AM hdf5_1_8/m4/ltversion.m4 AM hdf5_1_8/m4/lt~obsolete.m4 AM hdf5_1_8/m4/ltoptions.m4 M hdf5_1_8/configure M hdf5_1_8/Makefile.in M hdf5_1_8/testpar/Makefile.in M hdf5_1_8/configure.in M hdf5_1_8/src/Makefile.in M hdf5_1_8/tools/Makefile.in M hdf5_1_8/tools/misc/Makefile.in M hdf5_1_8/tools/h5dump/Makefile.in M hdf5_1_8/tools/h5repack/Makefile.in M hdf5_1_8/tools/h5jam/Makefile.in M hdf5_1_8/tools/h5diff/Makefile.in M hdf5_1_8/tools/lib/Makefile.in M hdf5_1_8/tools/h5copy/Makefile.in M hdf5_1_8/tools/h5import/Makefile.in M hdf5_1_8/tools/h5stat/Makefile.in M hdf5_1_8/tools/h5ls/Makefile.in M hdf5_1_8/hl/test/Makefile.in M hdf5_1_8/hl/tools/Makefile.in M hdf5_1_8/hl/tools/gif2h5/Makefile.in M hdf5_1_8/hl/Makefile.in M hdf5_1_8/hl/src/Makefile.in M hdf5_1_8/hl/c++/test/Makefile.in M hdf5_1_8/hl/c++/Makefile.in M hdf5_1_8/hl/c++/src/Makefile.in M hdf5_1_8/hl/c++/examples/Makefile.in M hdf5_1_8/hl/fortran/test/Makefile.in M hdf5_1_8/hl/fortran/Makefile.in M hdf5_1_8/hl/fortran/src/Makefile.in M hdf5_1_8/hl/fortran/examples/Makefile.in M hdf5_1_8/hl/examples/Makefile.in M hdf5_1_8/config/commence.am M hdf5_1_8/MANIFEST M hdf5_1_8/c++/test/Makefile.in M hdf5_1_8/c++/Makefile.in M hdf5_1_8/c++/src/Makefile.in M hdf5_1_8/c++/examples/Makefile.in M hdf5_1_8/bin/ltmain.sh M hdf5_1_8/bin/reconfigure M hdf5_1_8/perform/Makefile.in M hdf5_1_8/fortran/test/Makefile.in M hdf5_1_8/fortran/testpar/Makefile.in M hdf5_1_8/fortran/Makefile.in M hdf5_1_8/fortran/src/Makefile.in M hdf5_1_8/fortran/examples/Makefile.in M hdf5_1_8/aclocal.m4 M hdf5_1_8/examples/Makefile.in
* [svn-r19362] Move Windows specific compile and link flags to macrosAllen Byrne2010-09-093-94/+9
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* [svn-r19326] Added parallel build commands.Allen Byrne2010-08-314-3/+87
| | | | | | | | Corrected use/name of source folder aliases. Duplicated FindMPI.cmake so that non-c++ compiler is found first (recommemded commands did not work). Bring r19325 from trunk Tested: local linux with mpich
* [svn-r19155] Remove line in clean target that removes installed header files.Larry Knox2010-07-292-2/+0
| | | | Tested with h5 committest on amani, jam, heiwa and linew.
* [svn-r19106] Move Resources folder to config/cmakeAllen Byrne2010-07-201-8/+8
| | | | Tested: Local Linux
* [svn-r19036] Added executable Linker Flag for MSVC static builds: ↵Allen Byrne2010-06-292-0/+27
| | | | | | | | /NODEFAULTLIB:MSVCRT Added VERSION vars for inclusion into auto snapshot version update script Tested windows
* [svn-r18997] Updated config files and install commands per external ↵Allen Byrne2010-06-141-1/+1
| | | | | | developers recommendations. (r18996) Tested: local linux
* [svn-r18924] Updated install of fortran mod filesAllen Byrne2010-05-281-0/+25
| | | | Tested: local linux
* [svn-r18916] Description:Quincey Koziol2010-05-271-23/+27
| | | | | | | | | | Bring r18915 from trunk to 1.8 branch: Clean up a couple of compiler warnings (in Windows). Tested on: Mac OS X/32 10.6.3 (amazon) w/debug (too minor to require h5committest)
* [svn-r18897] Added fortran /dbglibs option to fortran compile flags for ↵Allen Byrne2010-05-251-1/+1
| | | | | | | | windows intel fortran case. Duplicated windows intel fortran flag block for hl/fortran Tested: windows
* [svn-r18889] Update CMake fortran configure/build with changes from community.Allen Byrne2010-05-251-0/+10
| | | | | | | | - Add an install rule to copy compiled fortran module files - Only build the xlatefile utility if testing and tools are enabled - Don't do MPI HAVE_XXX checks until MPI_FOUND is true - Install needs H5version.h & H5overflow.h to be copied - Add debug information flags to debug compile and link lines for win32 Intel compiler
* [svn-r18855] Added CPack commands for installtion programAllen Byrne2010-05-191-3/+3
| | | | Tested: local linux and Windows
* [svn-r18841] Changed version number to 1.8.4-snap0Mike McGreevy2010-05-181-1/+1
| | | | Updated RELEASE.txt file accordingly.
* [svn-r18836] Added code to config files, libhdf5.settings.in and ↵Larry Knox2010-05-175-0/+10
| | | | | | configure.in to add compiler version information for fortran and C++ in the settings file and the configure output for our common compilers on linux, solaris, and mac(gnu only). Tested: amani, jam, linew (h5committest) and with configure on these machines and tejeda.
* [svn-r18817] Added scripts to compile and run installed examples. The ↵Larry Knox2010-05-143-4/+125
| | | | | | scripts are installed with the examples, and there is one script to run the scripts for all hl examples and another to run the scripts for all the examples. Tested: amani, jam, linew (h5committest).
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