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* [svn-r29903] merge from trunk.Mohamad Chaarawi2016-05-0933-258/+1599
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| * [svn-r29591] Changed buf variable in h5awrite_f from INOUT to INScot Breitenfeld2016-03-291-1/+1
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| * [svn-r29379] Add individual LT_VERS_* variables for wrapper libraries: c++, ↵Larry Knox2016-03-091-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | fortran, java, hl, hl/c++, hl/fortran to so that the shared object version numbers can be incremented independently. Disabled auto-increment of shared object version numbers by h5vers. Files modified: config/lt_vers.am java/src/jni/Makefile.am hl/src/Makefile.am hl/c++/src/Makefile.am hl/fortran/src/Makefile.am c++/src/Makefile.am bin/h5vers fortran/src/Makefile.am
| * [svn-r29337] Cleaning warnings in Fortran code.Dana Robinson2016-03-081-2/+2
| | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial w/ Fortran
| * [svn-r29336] Removed unused variables from Fortran code.Dana Robinson2016-03-086-45/+2
| | | | | | | | | | | | | | Updated gnu Fortran flags. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial w/ Fortran
| * [svn-r29226] HDFFV-9552: merge in java code.Allen Byrne2016-02-292-4/+4
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| * [svn-r29182] Re-commit of HDFFV-8740 fix, which adds the ability to configureDana Robinson2016-02-221-7/+0
| | | | | | | | | | | | | | | | | | | | | | | | external dataset storage path behavior. This check-in fixes a bug in the original check-in where the external path stored in the file struct was not copied on reopen causing subsequent dataset operations to fail. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial w/ fortran and C++ autotools parallel (MPICH 3.1.4) w/ fortran
| * [svn-r29172] Fixed double word typo in #ifdef H5_FORTRAN_HAVE_C_SIZEOFScot Breitenfeld2016-02-191-1/+1
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| * [svn-r29169] Changed #ifdef to use H5_FORTRAN_C_LONG_DOUBLE_IS_UNIQUE ↵Scot Breitenfeld2016-02-191-2/+2
| | | | | | | | | | | | instead of H5_FORTRAN_HAVE_C_LONG_DOUBLE Tested: jam (gnu)
| * [svn-r29165] Various rododoc fixes. Effects comments only.Scot Breitenfeld2016-02-198-51/+22
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| * [svn-r29163] changed robodoc specs to look for .F90 filesScot Breitenfeld2016-02-191-4/+1
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| * [svn-r29162] added robodoc header informationScot Breitenfeld2016-02-191-11/+10
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| * [svn-r29155] HDFFV-9652: Add fortran wrappers/test for collective metadata ↵Scot Breitenfeld2016-02-195-121/+330
| | | | | | | | | | | | functions Tested: h5committest.new
| * [svn-r29092] Fixed uninitialized return value from fortran API.Scot Breitenfeld2016-02-111-2/+2
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| * [svn-r29074] fixed integer type for H5Sget_simple_extent_ndims_f argumentScot Breitenfeld2016-02-091-1/+1
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| * [svn-r29062] HDFFV-9564: Implement VDS Fortran wrappers.Scot Breitenfeld2016-02-0819-19/+1218
| | | | | | | | Tested: h5committest.new
| * [svn-r28936] spelling correctionScot Breitenfeld2016-01-201-2/+2
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| * [svn-r28761] Description:Quincey Koziol2016-01-011-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | Clean up many mismatches between malloc/free and H5MM_malloc/H5MM_xfree in the library and tests (and use of H5free_memory and H5Dvlen_reclaim). Also make H5Ocopy use a private version of H5Lexists, which doesn't internally throw (and suppress) errors when an object (or the path to it) isn't found in the destination. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
* | [svn-r29584] resolve some old merge conflicts.Mohamad Chaarawi2016-03-284-1654/+12
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* | [svn-r28715] - merge from trunkMohamad Chaarawi2015-12-211-0/+8
|\ \ | |/ | | | | - fix farray, earray, and btree test to use correct function to retrieve internal file struct.
| * [svn-r28555] Normalization of Fortran directory with revise_chunks (minor).Dana Robinson2015-12-101-0/+8
| | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial, with and without the direct VFD enabled
* | [svn-r28288] merge from trunk.Mohamad Chaarawi2015-11-052-1/+10
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| * [svn-r28039] Fixed valgrind mem leak.Scot Breitenfeld2015-10-121-1/+7
| | | | | | | | Tested: h5committest (partial).
| * [svn-r28020] Freed allocated memory in h5tenum_insert_ptr_c, valgrind fix.Scot Breitenfeld2015-10-091-0/+3
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* | [svn-r27959] - merge from trunk (pre-VDS)Mohamad Chaarawi2015-10-057-7316/+2
|\ \ | |/ | | | | - fix VOL initialization and Native plugin registration with new FAPL changes
| * [svn-r27818] Minor warning fixes.Dana Robinson2015-09-172-10/+2
| | | | | | | | Tested on: h5committest
| * [svn-r27796] Remove duplicated if blockAllen Byrne2015-09-151-5/+0
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| * [svn-r27795] Removed some autotools generated files that were not caught byDana Robinson2015-09-151-1628/+0
| | | | | | | | | | | | the last checkin. Tested on: bin/chkmanifest
| * [svn-r27794] Reintegration merge of features/autotools_rework branch with trunkDana Robinson2015-09-156-5681/+8
| |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | NOTES: - Developers will have to run autogen.sh before building with the autotools. - autogen.sh takes the -p option to mimic the old bin/reconfigure behavior. - The generated error, overflow and version headers have been left in place. - The generated H5LT parser code has also been left in place. - There are no changes for CMake users at this time. Tested on: h5committest
| | * [svn-r27787] Merge of r27632-27674 from the trunk.Dana Robinson2015-09-151-4/+4
| | | | | | | | | | | | Tested on: h5committest
| | * [svn-r27745] Merge trunk revision 27744Allen Byrne2015-09-107-56/+118
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| | * [svn-r27683] Restored the _POSIX_C_SOURCE flag that had been commented outDana Robinson2015-09-051-2/+2
| | | | | | | | | | | | | | | | | | | | | and modified the fortran/test/ Makefile.am to remove the build error with Intel Fortran. Tested on: h5committest
| | * [svn-r27638] Merged r27500-27631 from trunk.Dana Robinson2015-09-0147-162/+312
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| | * \ [svn-r27507] Merge of r27237-27500 from the trunk.Dana Robinson2015-08-14189-54789/+17902
| | |\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Tested w/ h5committest NOTES: - The manifest may still be messed up. - Cmake fails since the dual binary work needs to be merged with this repo's CMake externals.
| | * \ \ [svn-r27222] Merge of r27035-27221 from the trunk.Dana Robinson2015-06-174-61/+61
| | |\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Tested on 64-bit linux VM: Serial: C++ and Fortran 2003 Parallel: Fortran
| | * \ \ \ [svn-r27038] Merge of r26393-27031 from the trunk.Dana Robinson2015-05-0740-1414/+1361
| | |\ \ \ \ | | | | | | | | | | | | | | | | | | | | | Tested on 64-bit linux VM w/ C++ and Fortran 2003
| | * | | | | [svn-r26435] Remove DEFAULT_LIBS from configure.ac and irix6.x config file whichJerome Soumagne2015-03-112-4/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | was using it. Remove references to IRIX/irix* platform.
| | * | | | | [svn-r26429] Merge of r26393-26428 from the trunk.Dana Robinson2015-03-115-119/+156
| | |\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | Tested w/ h5committest
| | * \ \ \ \ \ [svn-r26274] Merge of r26096 to r26271 from trunk.Dana Robinson2015-02-2216-103/+275
| | |\ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Tested on: jam - serial: C++/Fortran parallel: Fortran
| | * \ \ \ \ \ \ [svn-r26143] Merged r26096-26142 from trunk.Dana Robinson2015-02-073-26/+31
| | |\ \ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Tested on: jam w/ Fortran and C++
| | * | | | | | | | [svn-r26132] reverted change 26177Scot Breitenfeld2015-02-053-3/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | svn merge -c -26117 . Shared Fortran libraries don't work on Mac, the check for building shared on Mac needs to stay in.
| | * | | | | | | | [svn-r26117] Autotools work HDFFV-9067,Scot Breitenfeld2015-02-033-3/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Removed restiction of disabling shared libraries on the MAC, H5_FORTRAN_SHARED was replaced with HAVE_SHARED_CONDITIONAL since H5_FORTRAN_SHARED was removed. tested: jam
| | * | | | | | | | [svn-r26113] Updated configure and the parallel tests to 'USE mpi' instead ↵Scot Breitenfeld2015-02-023-3/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | of 'include 'mpih.f' tested jam (mpich + gnu).
| | * | | | | | | | [svn-r26097] Removed configure and Makefile.in files from version control.Dana Robinson2015-02-025-7392/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Developers will now have to run bin/reconfigure (deprecated, will be removed soon) or autogen.sh after checking out code. Part of: HDFFV-9120 Tested on: jam with Fortran and C++
| | * | | | | | | | [svn-r26096] Merged r26024-26095 from trunk.Dana Robinson2015-02-022-3/+3
| | |\ \ \ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Tested on: jam with Fortran and C++
| | * | | | | | | | | [svn-r26069] Removed the option to selectively disable internal filters like ↵Dana Robinson2015-01-295-25/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | n-bit at compile time. Fixes HDFFV-9086 Tested on: jam, both serial and parallel w/ fortran & C++
| | * | | | | | | | | [svn-r26051] Fix for HDFFV-9092Scot Breitenfeld2015-01-275-5/+10
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Change AC_TRY_RUN TO AC_TRY_COMPILE Changed all the instances of AC_TRY_RUN for the Fortran and C++ tests to use AC_COMPILE_IFELSE and moved all the tests to new files in m4 directory: aclocal_cxx.m4 (for C++ tests) aclocal_fc.m4 (for Fortran tests) tested: jam
* | | | | | | | | | | [svn-r27777] merge from trunk.Mohamad Chaarawi2015-09-14206-55379/+19918
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| * | | | | | | | | | [svn-r27768] Description:Quincey Koziol2015-09-141-0/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Complete revamp of package initialization/shutdown mechanism in the library. Each package now has a single init/term routine. This new way should avoid packages being re-initialized during library shutdown and is also be _much_ more proactive about giving feedback for resource leaks internal to the library. Introduces a new "module" header file for packages in the library (e.g src/H5Fmodule.h) which sets up some necessary package configuration macros for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly modified version of this header, src/H5FDdrvr_module.h) Also cleaned up a bunch of resources leaks all across the library and tests, along with addressing many warnings, as I encountered them. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel Linux/64 3.10.x (kituo) w/serial & parallel Linux/64 2.6.x (ostrich) w/serial
| * | | | | | | | | | [svn-r27767] Snapshot version 1.9 release 231HDF Tester2015-09-141-1/+1
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