| Commit message (Collapse) | Author | Age | Files | Lines |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Updating autotools
Description:
Installed new autotools and used them to reconfigure HDF5.
- Automake upgraded to 1.11
- Autoconf upgraded to 2.64
- bin/reconfigure script edited to use new versions (on jam), and
run to generate new configure script and Makefile.in's.
- configure.in script edited to add "_cv_" to all AC_CACHE_VAL strings
(in order to comply with new autoconf standard).
Tested:
Tested on machines jam, smirom, liberty, linew.
Tested w/ features c++, fortran, parallel.
Tested w/ compilers gcc, pgcc, icc.
Further testing via Daily Tests should catch any other outliers. Upon
passing DT's, I'll propogate the new tools into 1.8, hdf4, et cetera.
|
| |
|
|
|
|
|
|
| |
Added filename argument to file_space routine to avoid conflicts of the files when running fortranlib_test_1_8.f90 and fortranlib_test.f90 at the same time (i.e. when running the tests in parallel).
tested: smirom (ifort, pgf90, g95, gfortran), linew
|
| |
|
| |
|
|
|
|
|
|
| |
changed LEN to LEN_TRIM
tested: smirom
|
|
|
|
|
|
|
| |
Changed fprintf statements for printing unsigned int from %d to %u.
Platforms tested:
smirom
|
| |
|
| |
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
If the AR command has embedded shell separators such as the case of
"AR = ar -X 64", $AR ends up as a blank.
Solution:
Put quotes around the command substitution string to protect against embedded
separators. Applied the same to both AR and RANLIB assignments.
Tested:
At Up (AIX 5.3) only because that was where I discovered the error
when AR is ar -X 64
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
H5D_CHUNK_CACHE_NSLOTS_DEFAULT_F
H5D_CHUNK_CACHE_NBYTES_DEFAULT_F
H5D_CHUNK_CACHE_W0_DEFAULT_F
to
H5D_CHUNK_CACHE_NSLOTS_DFLT_F
H5D_CHUNK_CACHE_NBYTES_DFLT_F
H5D_CHUNK_CACHE_W0_DFLT_F
to get under the 31 limit for variable names
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
H5D_CHUNK_CACHE_NSLOTS_DEFAULT_F
H5D_CHUNK_CACHE_NBYTES_DEFAULT_F
H5D_CHUNK_CACHE_W0_DEFAULT_F
to
H5D_CHUNK_CACHE_NSLOTS_DFLT_F
H5D_CHUNK_CACHE_NBYTES_DFLT_F
H5D_CHUNK_CACHE_W0_DFLT_F
to get under the 31 limit for variable names
|
|
|
|
|
|
|
|
|
|
|
|
| |
- Updated bin/reconfigure to use latest version of automake (1.10.2).
Re-generated Makefile.in's by running bin/reconfigure.
- Added libtool version numbers to c++, fortran, hl, hl c++, and hl fortran
libraries.
Tested:
jam, liberty, smirom
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Added tests for the new APIs:
H5D_H5DGET_ACCESS_PLIST_F
H5I_H5IIS_VALID_F
H5P_H5PSET_CHUNK_CACHE_F
H5P_H5PGET_CHUNK_CACHE_F
Platforms tested:
smirom: pgf90, ifort
linew
liberty: gcc43, gfortran43, gcc44, gfortran44
|
|
|
|
|
|
|
|
|
|
|
| |
Added APIs:
H5P_H5PSET_CHUNK_CACHE_F
H5P_H5PGET_CHUNK_CACHE_F
Platforms tested:
smirom: pgf90 ifort
|
|
|
|
|
|
|
|
|
| |
Added APIs:
H5D_mp_H5DGET_ACCESS_PLIST_F
H5I_mp_H5IIS_VALID_F
H5P_mp_H5PSET_CHUNK_CACHE_F
H5P_mp_H5PGET_CHUNK_CACHE_F
|
|
|
|
|
|
|
|
|
| |
Added APIs:
H5D_mp_H5DGET_ACCESS_PLIST_F
H5I_mp_H5IIS_VALID_F
H5P_mp_H5PSET_CHUNK_CACHE_F
H5P_mp_H5PGET_CHUNK_CACHE_F
|
|
|
|
|
|
| |
Added Fortran API H5Iis_valid_f
Platforms tested: smirom - ifort pgf90
|
|
|
|
|
|
| |
Added Fortran API h5dget_access_plist_f
Platforms Tested: Smirom - pgf90 ifort
|
| |
|
|
|
|
|
|
|
|
| |
H5D_CHUNK_CACHE_NSLOTS_DEFAULT_F
H5D_CHUNK_CACHE_NBYTES_DEFAULT_F
H5D_CHUNK_CACHE_W0_DEFAULT_F
used in cache/chunk functions.
|
|
|
|
|
|
|
|
|
| |
Fixed warnings from absoft's compiler for !DEC$ statements.
Solution: There should not be a space after !DEC$ statements, removed the spaces.
Platforms tested:
Jam with gcc and f95
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug Fix
Description:
Fixing BZ #1381. The --includedir=DIR configure option, which is used
to specify the installation location of C header files, did not work
correctly as the path was hard-coded in config/commence.am. I'm presuming
this is because an older version of automake didn't know where to put
c header files. In any case, removing this line now defaults the includedir
to the same directory that it is currently hard-coded to, and also fixes
the configure flag to allow customization of this value.
Tested:
jam, liberty
|
|
|
|
|
|
|
| |
big or little endian machine. Configure.in was modified to export a variable carrying endianess information to testh5ls.sh. This script then compares the current run with 2 expected outputs, one for a big-endian machine (linew was used to generate the output), other for little endian (jam was used to generate the output)
the way h5ls prints types, it starts searching for NATIVE types first. One solution would be h5ls not to detect these native types, using for example the same print datatype function that h5dump does, that would make the output look the same on all platforms ("32-bit little-endian integer" would be printed instead). Drawback, this "native" information would not be available. Other solution is to have not one but 2 expected outputs and make the shell script detect the endianess and compare with one output or other
tested: h5committest
|
|
|
|
|
|
|
|
|
|
|
| |
replacing all instances with long long.
Tested:
h5comittest
fedora 10 x64
Vista 32, VS2005, IVF101
XP32, Cygwin
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
*Fixed cd_nelements in nh5pget_filter_c - cd_nelments not pased in or returned correctly. Since
cd_nelmts has IN/OUT attributes, fixed the input and
returned value of cd_nelmnts to satisfy this specification.
*Fixed 'name' returned in nH5Pget_external_c - if the size of the fortran buffer is larger then
the returned string from the function then we need to give HD5packFstring the
fortran buffer size so that it fills the remaining unused characters with blanks. Found
with the gfortran compiler.
Platforms tested: smirom, liberty
|
|
|
|
|
|
| |
Changed 'THG' to 'The HDF Group' in various HDF5 source files,
most of which are <subdirectory>/COPYING.
-- Closes Bugzilla entry 1403.
|
|
|
|
|
|
|
|
|
| |
added:
!DEC$ATTRIBUTES reference ::
for character strings being passed in to C to fix bug in VMS for functions
h5sdecode_f and h5sencode_f.
|
|
|
|
|
|
|
|
| |
added missing reference in h5lget_name_by_idx_f:
!DEC$ATTRIBUTES reference ::
for character strings being passed in to C to fix bug in VMS.
|
|
|
|
|
|
|
| |
Cosmetic changes, Also tested -r16231 on:
Jam (intel 10.1)
Smirom (intel 10.1)
|
|
|
|
| |
Added chunk property to the data set because changes in the cC function H5Dset_extent now require/check that the data set is chunked.
|
|
|
|
|
|
|
|
| |
added:
!DEC$ATTRIBUTES reference ::
for character strings being passed in to C to fix bug in VMS.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Description:
- Remove need to set LD_LIBRARY_PATH when using shared szip library.
- Libtool 2.2.6a is now used to generate libraries.
- 'make check install' dependency bug is fixed, and should no longer
break the build.
- removed hard coding of shell in config/commence.am, as this causes
problems on Solaris with the new version of libtool.
- RELEASE.txt with appropriate changes.
Tested:
- kagiso, smirom, linew (merged from 1.8, pretty quick tests)
|
|
|
|
|
|
|
| |
The information of libhdf5_fortran.settings are all included in
libhdf5.settings now. Remove it from the source.
Tested: kagiso with fortran and C++.
|
|
|
|
|
|
|
|
| |
Description:
Visual Studio compiler was complaining because variables were declared mid-function, when they should be declared at the top. This checkin simply moves the declarations to the top.
Tested:
Simple edit, VS2005 only
|
|
|
|
| |
Moved the H5E flags from H5fortran_flags.f90 into the H5E module, we therefore don't need H5fortran_flags.f90.
|
|
|
|
|
|
|
|
| |
We check for all the available reals in Fortran and if 16 byte real is available in Fortran and not in C then we disable the 16 byte real in Fortran. Also added the test for 12 byte real in Fortran so that it can match the 12 byte float in C if available. Note: if KIND=10 and KIND=16 are both avaiable as when using g95, then it may be the case on some systems that the size of KIND=10 and KIND=16 are both 16 bytes, so the program will print twice in H5fort_type_defines.h
#define H5_FORTRAN_HAS_REAL_16
which should not cause any errors.
|
|
|
|
| |
Added additional H5T definitions: H5T_NATIVE_REAL_4, H5T_NATIVE_REAL_8, H5T_NATIVE_REAL_16
|
|
|
|
| |
Removed refences to "double" so that we don't distinguish between writeDoubleToFiles and writeFloatToFiles such that we match the definitions of c_float_4, c_float_8, and c_float_16 in H5f90i_gen.h
|
|
|
|
|
|
| |
Changed the datatype test programs such that we don't distinguish between writeDoubleToFiles and writeFloatToFiles so that we only define c_float_4, c_float_8, and c_float_16 in H5f90i_gen.h
Added the definition of real_4_f, real_8_f, real_16_f depending on if they are available, also in H5f90i_gen.h
|
|
|
|
| |
Cosmetic changes: added additional comments at the start of the file.
|
|
|
|
|
|
|
|
|
|
|
| |
The custom rules for installing h5cc, h5fc, and the fortran modules in fortran
and in hl/fortran don't use $(DESTDIR). Added it to all those rules.
Tested: kagiso both serial and parallel with fortran and cxx enabled.
Tested by:
make install
make DESTDIR=/tmp/acheng install
diff -r /tmp/acheng/.../hdf5 hdf5
|
|
|
|
| |
Removed blank lines
|
| |
|
|
|
|
| |
Removed extraneous comments and unused code.
|
|
|
|
|
| |
Changed the tests so that the *.h5 test files are removed depending on the HDF5_NOCLEANUP environment variable.
bug 696
|
|
|
|
|
|
|
|
| |
H5Fget_obj_count to ssize_t and modified
C++ and Fortran API functions. This is for bug #1245.
Tested on smirom, linew, and kagiso.
|
|
|
|
| |
Fix for test of H5Tget_native_type_f
|
|
|
|
| |
Added test for h5tget_native_type_f
|