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* Strip HD prefix from string/char C API calls (#3540)Dana Robinson2023-09-151-4/+4
| | | | | | | | | | | | | | | | | | | | | * Strip HD prefix from string/char C API calls * HD(f)(put|get)(s|c) * HDstr* * HDv*printf * HD(s)(print|scan)f * HDperror But NOT: * HDstrcase* * HDvasprintf * HDstrtok_r * HDstrndup As those are not C99 and have portability work-around implementations. They will be handled later. * Fix th5_system.c screwup
* Remove HD from HDmem* calls (#3211)Dana Robinson2023-06-291-1/+1
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* Remove HD from C std lib file ops (#3206)Dana Robinson2023-06-291-8/+8
| | | | | | | | | * HDfclose * HDferror * HDfeof * HDfflush * HDfopen * HDfread * HDfwrite
* Many clang -Wextra-semi-stmt fixes (#2537)Sean McBride2023-06-161-3/+3
| | | | | * Adds semicolons to function-like macros * Adds a do..while(0) loop to some macros * Removes semicolons when inappropriate, especially H5E_TRY_BEGIN/END
* Update copyright headers (#2184)Larry Knox2022-11-011-1/+0
| | | | | * Updated source file copyright headers to remove "Copyright by the Board of Trustees of the University of Illinois", which is kept in the top-level COPYING file.
* Develop clang 13 format (#1933)Allen Byrne2022-07-261-1/+1
| | | | | * Update format source to clang 13 * More format changes
* h5test.h testing macros get enclosed in do..while loops (#1721)Dana Robinson2022-05-041-1/+1
| | | | | | | * h5test.h testing macros get enclosed in do..while loops * Adds missed macro in hl C++ code * Fixes macro in Windows code
* Snprintf2 (#1399)Sean McBride2022-01-281-1/+1
| | | | | | | | | | | | | * Replaced many uses of sprintf with safer snprintf Many very straightforward, but in a few cases added a length parameter to some private functions, because buffer length was otherwise unknowable. * Removed unnecessary use of static on small buffers This improves thread safety. * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Fixed Spelling Errors (#1166)Scot Breitenfeld2021-12-071-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * fixed missed closing of a dataset * fixed missed closing of a dataset * fixed typo in error return * Committing clang-format changes * minor edits * code format * Committing clang-format changes * code format * minor edit * switched from using MPI_count, to actual bytes written for H5FD_mpio_debug rw debugging * Committing clang-format changes * changed size_i in printf to reflect the I/O. * Committing clang-format changes * Fixed seg fault with xlf on BE with -qintsize=8 * fixed error function string * spelling corrections via codespell, added new spell check github actions * Committing clang-format changes * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * Committing clang-format changes * misc * misc * misc * misc * misc * misc * Committing clang-format changes * misc * work around for https://github.com/codespell-project/codespell/issues/2137 * misc * added missing file * misc * misc. * misc * switch to using Codespell with GitHub Actions * misc. * misc. * fixed more sp errors * Fix new typos found by codespell. * fixed proceed with precede * fixed variable in fortran test * fixed minnum * updated spelling list Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
* More clang tidy (#908)Sean McBride2021-08-231-1/+1
| | | | | | | | | | | | | | | | | | | * Pacify clang-analyzer-unix.cstring.NullArg * Apply some bugprone-suspicious-string-compare * Apply some readability-simplify-boolean-expr * Apply some readability-make-member-function-const * Apple some bugprone-macro-parentheses * Changed an f suffix to L for `long double` * Applied some readability-uppercase-literal-suffix automatically * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* C++ warning and build fixes (#707)Dana Robinson2021-06-011-6/+6
| | | | | | | | | | | | * Committing clang-format changes * C++ build and warning updates * Fixes all warnings on C++ (with gcc 9.3) * Updates CMake and Autotools C++ builds * Undo warning clobber Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Update clang config (#473)Quincey Koziol2021-03-171-1/+4
| | | | | | | * Update clang config to put H5E_BEGIN_TRY / H5E_END_TRY on separate lines, empty C++ methods on separate lines, understand that ALL_MEMBERS / UNIQUE_MEMBERS are foreach macros, and properly skip the 'config' directory in the find command without emiting a warning * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Fixed all clang-tidy bugprone-suspicious-string-compare warnings (#451)Sean McBride2021-03-101-1/+1
| | | | | | | | | * Fixed all clang-tidy bugprone-suspicious-string-compare warnings This change was generated entirely by clang-tidy itself. * Reformat code with clang v10.0.1. Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
* More warning fixes (#400)Sean McBride2021-03-041-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Fixed -Wunused-local-typedef warning * Fixed -Wformat warnings In one case also removed a `z` character. There was a `z%d` that I think was supposed to be `%zd` * Fixed -Wshorten-64-to-32 warnings * Fixed -Wself-assign warnings * Fixed -Wreserved-id-macro warnings * Commit format changes from clang-format, clang version 10.0.1. * Fixed -Wself-assign warnings * Fixed -Wunused-local-typedef warning * Fixed -Wformat warnings In two cases also removed a `z` character. There was a `z%d` that was supposed to be `%zd`. * Fixed -Wshorten-64-to-32 warnings * Fixed -Wreserved-id-macro warnings * Fixed -Wself-assign warnings * Format source. * Remove blank lines to pass format check. Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
* Update license url part2 (#333)Larry Knox2021-02-171-1/+1
| | | | | | * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING file - files not in src or test.
* Clang-format of source filesAllen Byrne2020-09-301-270/+282
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* Fix NoFilter buildAllen Byrne2020-04-241-1/+1
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* Fix shadowed typeAllen Byrne2020-04-131-3/+3
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* This test cannot use HD prefix macro with printf of fprintfAllen Byrne2019-08-171-2/+2
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* Update HD prefix and reconcile hl/cpp testAllen Byrne2019-08-161-8/+16
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* Add HD prefix to testsAllen Byrne2019-08-151-61/+61
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* Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* Description:Binh-Minh Ribler2016-10-261-2/+6
| | | | | | | | | | | - In the test for HDFFV-9758, a pragma pack(1) caused failure on Emu because Sparc cannot access misaligned data. Changed it to pack() to do the default alignment. - Added DOXYGEN_SHOULD_SKIP_THIS blocks to private elements to prevent warnings from doxygen. Platforms tested: SunOS 5.11 (emu) Linux/32 2.6 (jam)
* Description:Binh-Minh Ribler2016-10-241-1/+1
| | | | | | | | User's sample code used "not" instead of "!" and Windows does not like that. Fixed. Platforms tested: Linux/32 2.6 (jam) Darwin (osx1010test)
* Purpose: Fix Packet Table issues cont.Binh-Minh Ribler2016-10-241-17/+21
| | | | | | | | | Description: Misc cleanups and comments in tests. Platforms tested: Linux/32 2.6 (jam) Darwin (osx1010test) Linux/64 (jelly)
* Description:Binh-Minh Ribler2016-10-201-58/+111
| | | | | | | | | | | | - Removed calls to H5Tget_native_type in the PT code. The application would need to do that if desired. - Added Abhi's program to tests to verify the fix. - This fix might have fixed HDFFV-9927, HDFFV-9042, and the issue reported by Barbara Jones from Ametek as well. Platforms tested: Linux/32 2.6 (jam) Linux/64 (jelly) Darwin (osx1010test)
* [svn-r29803] Purpose: Code improvementBinh-Minh Ribler2016-04-261-8/+9
| | | | | | | | | | | | | | Description: The constructor FL_PacketTable added in 1.10.0 did not have good prototype; it didn't allow the property list to be default. Marked it deprecated and added this one: FL_PacketTable(hid_t fileID, const char* name, hid_t dtypeID, hsize_t chunkSize = 0, hid_t plistID = H5P_DEFAULT) Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
* [svn-r29710] Purpose: Code improvementsBinh-Minh Ribler2016-04-151-82/+82
| | | | | | | | | | | Description: - Replaced "goto out" and "out:" with "goto error" and "error:" to indicate the failure situations. - Replaced old-style casts with static_cast to remove warnings. Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
* [svn-r29364] Purpose: Improve C++ Packet Table libraryBinh-Minh Ribler2016-03-091-16/+37
| | | | | | | | | | | | | | | | | | | | | | Description: Performed similar improvement as the C Packet Table library. - Removed the VLPT_REMOVED ifdef around class VL_PacketTable - Moved VL_PacketTable::IsVariableLength to PacketTable - Moved VL_PacketTable::FreeReadBuff to PacketTable::FreeBuff - Added overloaded constructor to FL_PacketTable that takes a property list ID and call the new C API H5PTcreate. - Added accessor wrappers to class PacketTable, per HDFFV-8623/patch 003. /* Returns the ID of the dataset associated with the packet table */ hid_t GetDataset(); /* Returns the ID of the datatype the packet table uses */ hid_t GetDatatype(); - Replaced appropriate calls in tests - Various cleanup Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
* [svn-r21175] Release datatypes created locallyAllen Byrne2011-08-051-0/+18
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* [svn-r15628] Description:Quincey Koziol2008-09-161-2/+2
| | | | | | | | | | | | | Remove trailing whitespace from C/C++ source files, with the following script: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Tested on: Mac OS X/32 10.5.5 (amazon) No need for h5committest, just whitespace changes...
* [svn-r15462] Description:Quincey Koziol2008-08-121-3/+3
| | | | | | | | Correct compiler warnings from Visual Studio. Tested on: Mac OS X/32 10.5.4 (amazon) w/FORTRAN & C++ (Too minor to require full h5committest)
* [svn-r15408] Purpose: Enable testBinh-Minh Ribler2008-07-251-8/+0
| | | | | | | | | | | Description: The daily test failure caused by the C++ API was fixed, so put the packet table test back. Platforms tested: SunOS 5.10 (linew) Linux 2.6 (kagiso) FreeBSD (duty)
* [svn-r15395] When an attribute was opened twice and data was written with ↵Raymond Lu2008-07-221-1/+8
| | | | | | | | | | | one of the handles, the file didn't have the data. It happened because each handle had its own object structure, and the empty one overwrote the data with fill value. This is fixed by making some attribute information like the data be shared in the attribute structure. Tested on smirom, kagiso, and linew.
* [svn-r13857] This test will fail without having zlib library and this is the ↵MuQun Yang2007-06-121-3/+7
| | | | | | case for windows 64-bit support. So we add a macro to skip this test if there is no zlib library. Tested at windows and linux. Too minor to use h5committest.
* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-071-2/+3
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
* [svn-r12775] Fixed HL C++ errors from removing VL packet table. Silly me forJames Laird2006-10-181-0/+2
| | | | | | omitting the C++ test in the first place! Tested on heping (with --enable-cxx!).
* [svn-r12773] Removed Variable-length packet tables from the HL libraries.James Laird2006-10-171-0/+2
| | | | | | | This is a quick change to make sure nothing breaks; VL functions in the header files have been #ifdef'd out. Tested on mir.
* [svn-r12686] Added compression to Packet Tables. Now both C and C++ packet ↵James Laird2006-09-261-12/+48
| | | | | | | | | | | | | | | | tables have an extra parameter that sets the deflate filter. Added tests, made examples use the new APIs. Cleaned up include files a little and removed some casts that I hope are superfluous. If anybody encounters strange errors in the packet table tests where the chunk size is set to some extremely large value, please let me know, but I was unable to reproduce this error on any system. Tested on mir, heping, sol, juniper, VS 6.0. Looked for the chunk size error on several other systems a month or two ago.
* [svn-r12576] Added funtions to query the "current position" for Packet ↵James Laird2006-08-141-0/+16
| | | | Tables in C and C++.
* [svn-r11537] Purpose:Albert Cheng2005-10-111-0/+14
| | | | | | Fixed the copyright notice. Tested in heping.
* [svn-r11245] Purpose:Quincey Koziol2005-08-131-2/+2
| | | | | | | | | | | | | | | | | | | | Code cleanup Description: Trim trailing whitespace, which is making 'diff'ing the two branches difficult. Solution: Ran this script in each directory: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r10729] Purpose:James Laird2005-05-051-6/+7
| | | | | | | | | | | | | | | | | Cray X1 Port Description: Porting 1.7 branch to Cray X1. With these changes, HDF5 builds, but there are some errors in the tests. Working on the errors. Solution: Added nv1-cray file to config directory. Cleaned up some code in hl/c++ that was causing compiler to complain. Platforms tested: Cray X1, mir, sleipnir Misc. update:
* [svn-r10467] James Laird2005-03-281-97/+213
| | | | | | | | Purpose: Made the C++ Packet Table tests look like other HDF5 tests (using PASSED(), etc.). Platforms tested: sleipnir, mir, modi4, windows
* [svn-r10461] James Laird2005-03-281-1/+6
| | | | | | | | Purpose: Bug fix -- ensure that C++ packet table test cleans up its output file. Platforms tested: sleipnir (minor change)
* [svn-r10459] James Laird2005-03-281-0/+398
Purpose: Added C++ wrapper for Packet Table API. Description: Added macro for high-level C++ library (LIBH5CPP_HL), which changes every Makefile.in. Added directories for high-level C++ library (though currently only Packet Table API is supported). Added both C++ source and tests. Platforms tested: sleipnir, mir, modi4 Misc. update:
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