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* Update copyright headers (#2184)Larry Knox2022-11-011-1/+0
| | | | | * Updated source file copyright headers to remove "Copyright by the Board of Trustees of the University of Illinois", which is kept in the top-level COPYING file.
* Develop clang 13 format (#1933)Allen Byrne2022-07-261-22/+22
| | | | | * Update format source to clang 13 * More format changes
* Fixed Spelling Errors (#1166)Scot Breitenfeld2021-12-071-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * fixed missed closing of a dataset * fixed missed closing of a dataset * fixed typo in error return * Committing clang-format changes * minor edits * code format * Committing clang-format changes * code format * minor edit * switched from using MPI_count, to actual bytes written for H5FD_mpio_debug rw debugging * Committing clang-format changes * changed size_i in printf to reflect the I/O. * Committing clang-format changes * Fixed seg fault with xlf on BE with -qintsize=8 * fixed error function string * spelling corrections via codespell, added new spell check github actions * Committing clang-format changes * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * Committing clang-format changes * misc * misc * misc * misc * misc * misc * Committing clang-format changes * misc * work around for https://github.com/codespell-project/codespell/issues/2137 * misc * added missing file * misc * misc. * misc * switch to using Codespell with GitHub Actions * misc. * misc. * fixed more sp errors * Fix new typos found by codespell. * fixed proceed with precede * fixed variable in fortran test * fixed minnum * updated spelling list Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
* Update license url part2 (#333)Larry Knox2021-02-171-1/+1
| | | | | | * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING file - files not in src or test.
* Clang-format of source filesAllen Byrne2020-09-301-365/+354
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* Removes staff email addresses from the repositoryDana Robinson2020-08-071-9/+9
| | | | Removes redundant C library headers from hl library
* Trim trailing whitespaceQuincey Koziol2020-04-201-7/+7
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* HDFFV-10345 spelling errorsAllen Byrne2018-02-051-3/+3
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* Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* [svn-r29648] FIX: HDFFV-8486 Scot Breitenfeld2016-04-061-79/+197
| | | | | | | | h5tbmake_table_f is missing the fill_data parameter (which is in the C counterpart) ADDED NEW API: h5tbread_table_f Tested: platypus, ostrich
* [svn-r27493] Trying again to merge the F2003_v1.10 branch to the trunk.Scot Breitenfeld2015-08-111-297/+10
| | | | Tested: h5committest --PASSED--
* [svn-r27489] reverted merge of branchScot Breitenfeld2015-08-111-10/+297
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* [svn-r26908] Added missing c_long_double interfaces, now handles promotion ↵Scot Breitenfeld2015-04-231-287/+0
| | | | of reals and integers to 8 bytes, added C wrappers that take pointers from Fortran.
* [svn-r26875] Added BIND(C) to interfaces.Scot Breitenfeld2015-04-211-50/+50
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* [svn-r26417] Removed compiler warnings from HL. HDF5-237Scot Breitenfeld2015-03-101-59/+59
| | | | Tested: h5committest
* [svn-r22170] Removed extraneous svn executable properties from ↵Dana Robinson2012-03-281-0/+0
| | | | non-executable files.
* [svn-r20195] Description: Fixed memory leaks (valgrind detected) in ↵Scot Breitenfeld2011-03-071-3/+7
| | | | | | field_info and make tables routines. Tested: jam (gnu and intel compilers)
* [svn-r20192] Description: Bug 1939: h5tbget_field_info_fScot Breitenfeld2011-03-061-33/+32
| | | | | | | | | | | | | | | | | * Fixed error in passing an array of characters with different length field names for h5tbmake_table. * Fixed error in h5tget_field_info_f with packing the C strings into a fortran array of strings. * Added optional arguement to h5tbget_field_info_f called maxlen which returns the maximum string character length in a field name element. * Uncommented out test for h5tbget_field_info_f in the test program and added additional checks for the output. Tested: jam (intel and gnu compilers)
* [svn-r19654] Description:Quincey Koziol2010-10-211-130/+88
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring Coverity revisions from branch back to trunk, and clean up some other misc. compiler warnings also. r19500: Fix coverity items 1446 and 1447. Moved up calls to memset in test_cont in ohdr.c so the test never tries to close uninitialized locations. r19501: Fix coverity items 1398-1445. Various uninitialized variable errors in fheap.c. r19502: Fixed coverity issue 579 and some additional warnings in the file as well. r19503: Bug fix: This fix addressed the "RESOURCE_LEAK" problems #789 and 790, run 26 r19504: minor mods to try to keep coverity from flagging false positives. r19505: Fixed coverity issues 566 - 571. Declared variables that are passed to functions that use them as arrays to be arrays of size 1. Tested on: Mac OS X/32 10.6.4 (amazon) w/debug, production & parallel (h5committested on trunk)
* [svn-r18212] Description:Quincey Koziol2010-02-051-0/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring revisions from Coverity fixing branch to trunk: r18184: Fixed Coverity issue 373. Allocated memory freed in line 762 in case of error. r18185: Fixed Coverity issues 357 & 358. Added check for NULL pointer before use. r18186: Fix coverity item 65. Added code to h5unjam to correctly handle failures in read() and write, and also to correctly handle writes that write less than requested. r18187: Fix coverity items 115 and 116. Added code to H5Tenum.c to correctly close opened datatypes in case of failure. r18188: Fixed Coverity issue 46. Check that dataset->shared is not null when freeing memory after error. r18190: Fix coverity item 95. Added code to H5T_create_vlen to correctly close allocated datatype in case of failure. r18191: Fixed Coverity error 59. Checked sfirst for -1 value before use in line 10533. r18192: Fix Coverity items 121 and 28 Added Asserts: 121: assert that all dimensions of count have values greater than zero. 28: assert curr_span pointer is not null before dereference. Note: still need too add checks in hyperslab APIs that fail when count values are zero, and appropriate tests. r18194: Fixed Coverity issues 61 & 62. Checked variable snpoints for value < 0 in line 218. Tested on: Mac OS X/32 10.6.2 (amazon) w/debug & production (already daily tested on coverity branch)
* [svn-r18197] Description:Quincey Koziol2010-01-301-1/+1
| | | | | | | | | Trim trailing whitespace from source code files with this command: find . \( -name "*.[ch]" -or -name "*.cpp" -or -name "*.f90" \) -print |xargs -n 1 sed -i "" 's/[[:blank:]]*$//' Tested on: None - eyeballed only
* [svn-r18157] Description:Quincey Koziol2010-01-231-406/+233
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring back changes from Coverity session on 1/15/10: r18111: Fix Coverity issue #130: make certain that the cache gets freed on error. r18112: Fix Coverity issue #43 by making cache testing calls protected by 'pass' variable. r18113: Fix Coverity issue #129 by releasing the cache on error. r18115: Coverity #45 fix: patched an error check in H5Screate_simple to prevent future dereferencing of a NULL point. Added a verification in test/th5s.c. r18116: Fix Coverity issue #43 by releasing cache on error. r18117: Coverity #362,363 by adding HGOTO_DONE, freeing allocations and associated changes. REsolving coverity results #364-368, 369, 370-372, 377, 379, and 380. r18118: Fix Coverity issue #42: assert that cache & test specification pointer are valid. r18122: Coverity #362,363 by adding HGOTO_DONE and freeing allocations. This also takes care of #357,358. r18123: Coverity #359-361, 373-376: Added HGOTO_DONE(FAIL) statement after checking allocation for NULL. Verified allocation is freed in done block. r18128: Fixed coverity issue #10 -- removed dead code. Tested on: Mac OS X/32 10.6.2 (amazon)
* [svn-r16945] bug fix. call free on a string allocated by HD5f2cstringPedro Vicente Nunes2009-05-131-763/+915
| | | | tested: linux, windows
* [svn-r15628] Description:Quincey Koziol2008-09-161-1/+1
| | | | | | | | | | | | | Remove trailing whitespace from C/C++ source files, with the following script: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Tested on: Mac OS X/32 10.5.5 (amazon) No need for h5committest, just whitespace changes...
* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-071-2/+3
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
* [svn-r12857] Description:Elena Pourmal2006-11-031-5/+251
| | | | | | | | Updated code to eliminate compilation warnings and to add support for the latest g95. Platforms tested: g95 on kagiso, heping, and mir the first lite (making and reading 1-d datasets) test fails on mir
* [svn-r12314] Purpose:Quincey Koziol2006-04-291-4/+4
| | | | | | | | | | | | | | Code cleanup Description: Big clean up on high-level library code, including: - Removing include of HDF5 private header file(!) - Reduce number of compiler warnings - Untangle header files, etc. Platforms tested: FreeBSD 4.11 (sleipnir) w/C++ Linux 2.4/64 (mir) w/C++ & FORTRAN
* [svn-r12229] Purpose:Pedro Vicente Nunes2006-04-121-1/+1
| | | | | | | | | | | | | | | | | | | | | new feature Description: 1) separated the HL library into "public" and "private" header files, with the same caracteristics as the basic library 2) added the public headers to hdf5.h (with a conditional include macro, defined in configure.in) 3) added the path to HL in all Makefile.am 's , because of the inclusion in hdf5.h Solution: Platforms tested: linux 32, 64 AIX solaris with fortran and c++ (one packet table example fails) Misc. update:
* [svn-r11771] Purpose:Quincey Koziol2005-12-081-2/+2
| | | | | | | | | | | | Code cleanup Description: Fix a bunch of warnings flagged by Windows compilers. Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r11245] Purpose:Quincey Koziol2005-08-131-66/+66
| | | | | | | | | | | | | | | | | | | | Code cleanup Description: Trim trailing whitespace, which is making 'diff'ing the two branches difficult. Solution: Ran this script in each directory: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r10747] Purpose:Pedro Vicente Nunes2005-05-161-1/+0
| | | | | | | | | | | | | | | | | | bug fix Description: the fortran type integer*1 has become not portable. define the image fortran datatype as "integer" and make special save, read, and palette functions that use native integer for a memory type and UCHAR as disk type for the image data added some more tests with new palette definitions Solution: Platforms tested: linux solaris Misc. update:
* [svn-r9882] Purpose:Pedro Vicente Nunes2005-01-291-1/+1
| | | | | | | | | | | | | | | bug fix I forgot to change the name to "H5TB.h" in this file Description: Solution: Platforms tested: none Misc. update:
* [svn-r9727] Purpose:Quincey Koziol2004-12-291-4/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-) Description: Generally speaking, this is the "signed->unsigned" change to selections. However, in the process of merging code back, things got stickier and stickier until I ended up doing a big "sync the two branches up" operation. So... I brought back all the "infrastructure" fixes from the development branch to the release branch (which I think were actually making some improvement in performance) as well as fixed several bugs which had been fixed in one branch, but not the other. I've also tagged the repository before making this checkin with the label "before_signed_unsigned_changes". Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel & fphdf5 FreeBSD 4.10 (sleipnir) w/threadsafe FreeBSD 4.10 (sleipnir) w/backward compatibility Solaris 2.7 (arabica) w/"purify options" Solaris 2.8 (sol) w/FORTRAN & C++ AIX 5.x (copper) w/parallel & FORTRAN IRIX64 6.5 (modi4) w/FORTRAN Linux 2.4 (heping) w/FORTRAN & C++ Misc. update:
* [svn-r9644] Purpose:Pedro Vicente Nunes2004-12-081-0/+715
add hl fortran Description: Solution: Platforms tested: linux (absfot and pgf90) solaris (32 and 64 bit) AIX note : HP gives a compiling error , to be fixed in the future Misc. update:
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