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* Initial preparation of hdf5-1_11_3 release branch for HDF5 1.12.3 ↵Larry Knox2023-10-231-0/+1761
| | | | release:\nUpdated configure.ac for release: switched configure default to production mode and disabled maintainer mode.\nSet HDF5_GENERATE_HEADERS to OFF in src/CMakeLists.txt.\n Generated release files including Makefile.ins with autogen.sh, autoconf 2.71 and automake 1.16.2.\nIncremented version to 1.12.3-2. (#3756)
* Fix spelling (#3633)Dana Robinson2023-10-041-1/+1
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* Merge/update CMake, presets,java and tools (#3393)Allen Byrne2023-08-211-18/+16
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* Make sure that ONLY_SHARED_LIBS option is correctly set (#2546)Allen Byrne2023-03-141-9/+9
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* Update Copyright headers. (#2534)Larry Knox2023-03-1313-13/+0
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* 1.12 Merge Correct pkgconfig variables and libraries #2259 (#2478)Allen Byrne2023-02-171-2/+6
| | | | | * Merge Correct pkgconfig variables and libraries #2259 * Fix spacing
* 1.12 Correct requires setting for pkgconfig files #2280 (#2283)Allen Byrne2022-12-121-2/+2
| | | | | * Correct requires setting for pkgconfig files #2280 * Change macos for CI
* 1.12 Merge HDFGroup#2175 Implement option for using CMake GNUInstallDirs (#2221)Allen Byrne2022-11-041-3/+3
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* 1 12 doxygen merge from 1.10 (#2094)Allen Byrne2022-09-134-1803/+1736
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* fortran module folder from GH#1411 #1922 (#1942)Allen Byrne2022-07-272-9/+10
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* clang 13 format #1933 (#1939)Allen Byrne2022-07-275-63/+63
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* Normalize Fortran code with develop (#1600)Dana Robinson2022-04-075-7/+7
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* Assume C99 fixed sized ints exist, use them (#470) (#1571)Larry Knox2022-04-011-4/+0
| | | | | | | | | | | | | | | | * Committing clang-format changes * Assume C99 fixed sized ints exist, use them * Assume H5_SIZEOF_LONG_DOUBLE != 0, `long double` has existed since C89 Note, this is only assuming that `long double` exists, no assumptions about its size have been touched. Didn't remove any code that does things like test if `long double` and `double` have different sizes. * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Sean McBride <sean@rogue-research.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Hdf5 1 12 merge cmake ninja and java refs (#698)Allen Byrne2021-05-291-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * Merge CMake and java refs from dev Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Hdf5 1 12 Remove version from pkgcfg file names (#672)Allen Byrne2021-05-211-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms * Issue #669 remove version from pkgcfg filename * remove version from h5cc script Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Hdf5 1 12 merge changes (#604)Allen Byrne2021-04-281-7/+11
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* 1 12 merges from develop (#412)Allen Byrne2021-03-032-5/+5
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change
* Update URL in source file Copyright headers for web copy of COPYINGLarry Knox2021-02-2013-15/+15
| | | | file - files not in src or test.
* 1 12 merge of changes from dev (#271)Allen Byrne2021-01-191-1/+1
| | | | | | | | | | | | | | | * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix
* 1 12 - Update pkgconfig settings with version - #218 (#221)Allen Byrne2020-12-221-2/+2
| | | | | | | | | | | | | | | | | | | | | * merge updates from develop * remove extension on command * Run autogen before chkmanifest * Update release text files and whitespace cleanup * Update list * OESS-98 Update plugin build option * OESS-98 fix tools test for plugins * Fix conflict * OESS-98 fix hdf5 link target * Update pkgconfig settings with version - #218
* OESS-98 Update plugin build option - HDF5 1 12 (#173)Allen Byrne2020-12-151-0/+48
| | | | | | | | | | | | | * merge updates from develop * remove extension on command * Run autogen before chkmanifest * Update release text files and whitespace cleanup * Update list * OESS-98 Update plugin build option
* OESS-98 add CMake option to build plugins project within hdf5Allen Byrne2020-10-161-3/+3
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* Merge changes from developAllen Byrne2020-10-087-80/+80
| | | | | Comments and whitespace Skip file-locking and cache changes
* Source formattedAllen Byrne2020-10-017-2265/+1870
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* Add clang-format changes from develop.Allen Byrne2020-09-281-2/+13
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* Sync with developDana Robinson2020-08-015-219/+219
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* CMake updates:Allen Byrne2020-07-151-1/+20
| | | | | | Add build folder as Include for generated files Add install option for copying Fortran mod files to include folder Add PRI defines to win32defs file Exclude mingw from extra flags
* Whitespace cleanupAllen Byrne2020-05-124-48/+48
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* TRILAB-192 - merge changes from developAllen Byrne2020-04-071-43/+21
| | | | Single source, config files, for warnings for both autotools and CMake. Update CMake libraries, tools, tests to use correct flags.
* Merge changes from develop mostly cmake 3.12 minimum versionAllen Byrne2020-02-231-1/+1
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* HDFFV-11012 fix fortran include propertiesAllen Byrne2020-02-051-2/+2
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* Reverts the removal of config/conclude_fc.am while keepingDana Robinson2019-08-011-2/+1
| | | | the changes to config/gnu-fflags.
* Merge pull request #1808 in HDFFV/hdf5 from ↵Dana Robinson2019-07-291-1/+2
|\ | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:gnu-flags-work to develop * commit '7d291d059da6287f769951c4854c566da0b93ce8': Parallel Fortran tests now use the MPI module instead of including mpif.h. First stab at gfortran versions. Tested on gfortran 7-9 so far. Moved the -std=f2008 option to gfortran 9 for now. Updated gfortran options. * Removed conclude_fc.am, which was causing verbose builds. Need to investigate more, though. * Added gfortran 9 warnings and flags. This will need to be separated into other version blocks based on when the options first appeared. * The standard is now explicitly set at 2008.
| * Updated gfortran options.Dana Robinson2019-07-171-1/+2
| | | | | | | | | | | | | | | | * Removed conclude_fc.am, which was causing verbose builds. Need to investigate more, though. * Added gfortran 9 warnings and flags. This will need to be separated into other version blocks based on when the options first appeared. * The standard is now explicitly set at 2008.
* | HDFFV-10845 add_custom_command requires emulatorAllen Byrne2019-07-171-2/+2
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* HDFFV-10581 fix locations for static pdb filesAllen Byrne2019-07-081-2/+2
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* Add support for GCC 7.x warnings, update warnhist script to account for them,Quincey Koziol2019-06-211-2/+2
| | | | clean up warnings.
* HDFFV-10805 Add option to only build shared targetsAllen Byrne2019-06-181-97/+107
| | | | | HDFFV-10805 Add ONLY_SHARED_LIBS option and prefer shared over static HDFFV-10803 Update FindSZIP.cmake find module Remove unneeded modules and update java modules
* HDFFV-10738 Wrong INTENT for H5LTread_dataset_double_fM. Scot Breitenfeld2019-03-254-31/+31
| | | | | | Fixed. Also fixed INTENT issues for H5DS, H5IM and H5TB when reading or getting.
* Remove install-exec-hook from hl/fortran/Makefile.am.Larry Knox2019-01-071-2/+4
| | | | Add check for existing links in hl/fortran/src/Makefile.am.
* Uninstall should remove the libhdf5_hl_fortran links.Larry Knox2019-01-041-0/+1
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* Add symlinks named libhdf5_hl_fortran* to libhdf5hl_fortran inLarry Knox2019-01-041-0/+13
| | | | | | | Makefile.am to match cmake install and the name pattern for other hl lib files. Add missing ';' to test/dsets.c line 13075.
* Add mpi include folders for fortran C objectsAllen Byrne2018-06-061-2/+2
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* Remove link flag from compile commandAllen Byrne2018-05-221-1/+0
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* Correct command usageAllen Byrne2018-05-071-2/+2
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* Remove APPENDAllen Byrne2018-05-031-3/+3
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* add missing folder to pathAllen Byrne2018-05-031-2/+2
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* Revert to old style for LINK_FLAGS gen expr not workingAllen Byrne2018-05-031-21/+30
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* LINK_FLAGS must be separate property setsAllen Byrne2018-05-031-10/+21
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* Fix link flags syntaxAllen Byrne2018-05-031-9/+10
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