| Commit message (Collapse) | Author | Age | Files | Lines |
|
|
|
| |
Tested on: jam (too minor for h5committest)
|
| |
|
|
|
|
| |
*H5DSis_scale and other HL APIs do not null terminate string (and other issues)
|
|
|
|
|
|
|
|
|
| |
Merge 64-bit ID changes from branch to trunk. (Plus a few minor cleanups
that aren't on the branch)
Tested on:
Mac OSX/64 10.9.4 (amazon) w/C++ & FORTRAN
(h5committested on branch already for a week)
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Merge changes from Coverity branch to trunk:
r20907:
Original issue was #338.
Refactored code to clean up allocations consistantly, completely, check all returns, assign initialization values and handle errors.
Tested on:
MacOSX/64 10.9.3 (amazon) w/gcc 4.9, FORTRAN, C++, parallel & multi-threaded
(too minor to require h5committest)
|
|
|
|
|
|
|
|
|
|
|
|
| |
functions that return library-allocated memory. The test and tool
code were modified to use this new function where it's appropriate.
Fixes HDFFV-7710, HDFFV-8519, and HDFFV-8551
Tested on:
64-bit Windows 7 w/ VS2012
32-bit LE linux w/ parallel and fortran (jam)
32-bit LE linux w/ fortran and C++ (jam)
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Prep work for adding a memory free function, part of HDFFV-8551.
Tested on:
32-bit LE linux (jam)
* with C++, Fortran
* with thread safety on
These are minor changes (almost entirely renaming foo functions
to HDfoo) that don't change functionality. This should not
require a full commit test.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bring Coverity changes back to trunk:
r20399:
Change parse_command_line to free hand structure on error and only "leave()" at end of main.
r20400:
Purpose: Fix coverity issue 592
Description: Added void cast to call to H5F_sfile_assert_num() in
H5F_term)interface(). There is no need to check the return value of this
function in general, and there would be nothing to do even if it did fail.
r20401:
Added free(src_sizes) and free(src_offset). --gh
Tested on:
Mac OSX/64 10.8.2 (amazon) w/C++, FORTRAN, threadsafe
(too minor for h5committest)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Propogate Coverity changes to trunk, also fix compiler warnings and
other minor code cleanups. (QK & JK)
r20393: (Not directly propogated, since trunk also had a similar fix)
Move initialization ocrt_info.new_obj = NULL; before FUNC_ENTER_NOAPI -- gh
r20397:
Added free(src_sizes) --gh
r20398:
Added free(src_offset). --gh
Tested on:
Mac OSX/64 10.7.4 (amazon) w/debug, parallel, FORTRAN & C++
(h5committest forthcoming)
|
|
|
|
|
|
| |
Added fix and test case.
Tested: gnu and intel (jam)
|
|
|
|
|
|
|
|
|
| |
Trim trailing whitespace from source code files with this command:
find . \( -name "*.[ch]" -or -name "*.cpp" -or -name "*.f90" \) -print |xargs -n 1 sed -i "" 's/[[:blank:]]*$//'
Tested on:
None - eyeballed only
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bring Coverity fixes from 1/22/10 session to trunk:
r18137:
219: Initialized hid_t to -1 and added close to error block.
189-191: Initialized line to NULL and added free line, and close fp to error block.
r18138:
19: Moved code block for printing that the number of enums is empty to the error block. (Would never have been executed otherwise)
r18139:
Fix coverity item 58. Moved code related to displaying the parent of a repeated
group to the else(isRoot) section, as the root group has no parent.
r18140:
218: Initialized ret_value variable to -1. Because of throw Exception in default case of switch, the coverity problem would not have executed anyway. Good pratice is to initialize variables.
r18141:
Fix coverity item 92. Added code to H5E_register_class to free cls in case of
an error.
r18142:
Fix coverity item 91. Added code to H5E_create_msg to free msg in case of an
error.
r18143:
fixed issue 14,
took away "if" and used #ifndef_xxx.
r18144:
Fix coverity item 110. Added code to H5Eget_minor to free msg_str in case of
an error.
r18145:
fixed coverity #18 removed "aligned", it is always NULL.
r18146:
Fix coverity item 109. Added code to H5Eget_major to free msg_str in case of
an error.
r18147:
Fixed coverity #81 and #82, Check for bad pointer(s), but can't issue error, just leave
r18148:
Fix coverity item 97. Added code to H5FD_fapl_open to free copied_driver_info
in case of an error.
r18149:
Fix coverity item 96. Added code to H5FD_dxpl_open to free copied_driver_info
in case of an error.
r18150:
Fix Coverity issue #29: Protected cache_ptr dereferences with "if(pass)"
block
r18151:
Fix coverity item 93. Added code to H5FL_fac_init to free factory and new_node
in case of an error.
r18152:
Fix coverity items 98 and 99. Added code free allocated space in case of
error.
r18155:
124: Freed head pointer before jumping to done. There was no error handling block and normal exit used same path out.
120-123: Freed list of lists in error handling block.
r18156:
Fix coverity issues 179, 180, 181, 182, 183, 184, 186, 320, 407. These were resource leak issues where allocated memory was not freed, generally in the case of tests that failed.
Tested on:
Mac OS X/32 10.6.2 (amazon) debug & production
|
|
|
|
| |
tested: linux
|
|
|
|
|
|
|
|
| |
of the table
added a ckeck that avoids to read these records if they are not needed (for pushing down the table)
tested: windows, linux
|
|
|
|
| |
tested: windows, linux
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Remove trailing whitespace from C/C++ source files, with the following
script:
foreach f (*.[ch] *.cpp)
sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f
end
Tested on:
Mac OS X/32 10.5.5 (amazon)
No need for h5committest, just whitespace changes...
|
| |
|
|
|
|
| |
New fortran wrappers added.
|
|
|
|
|
|
|
|
|
| |
parameter checking. Removed #ifdefs regarding possible un-commenting of H5Dset_extent call in H5TBdelete_record. DONE NOW for 1.8, done already FOR 1.6
the H5Dset_extent function was done in 2002 but was at a time (2003-2006) previewed not to be used
it is now being used again
tested: windows, linux, solaris (in progress :-) )
|
|
|
|
|
|
| |
branch code freeze. No changes
are allowed until official announcement.
|
|
|
|
|
|
|
| |
this function was done in 2002 but was at a time (2003-2006) previewed not to be used
it is now being used again
tested: windows, linux
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Changed H5Acreate2 -> H5Acreate_by_name, to be more consistent with
other new API routines.
Re-added simpler form of H5Acreate2, which creates attributes directly
on an object.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Add H5Dcreate to API versioned routines, replacing internal usage with
H5Dcreate2
Fix thread-safe error stack initialization for API versioned error
stack printing routines.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Make H5Dopen versioned and change all internal usage to use H5Dopen2
Add simple regression test for H5Dopen1
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Deprecate H5Dextend in favor of H5Dset_extent (without using API
versioning, due to changed behavior) and switch internal usage to H5Dset_extent
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Put H5Acreate() under API versioning, with all internal usage shifted
to H5Acreate2().
Add regression tests for H5Acreate1().
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Move H5Gunlink to deprecated symbol section, replacing internal calls
with H5Ldelete.
Tested on:
FreeBSD/32 6.2 (duty)
FreeBSD/64 6.2 (liberty)
Linux/32 2.6 (kagiso)
Linux/64 2.6 (smirom)
Solaris/32 5.10 (linew)
Mac OS X/32 10.4.10 (amazon)
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Move H5Gmove() to deprecated code section, replacing with H5Lmove()
in source files.
Tested on:
FreeBSD/32 6.2 (duty)
FreeBSD/64 6.2 (liberty)
Linux/32 2.6 (kagiso)
Linux/64 2.6 (smirom)
Solaris/32 5.10 (linew)
Mac OS X/32 10.4.10 (amazon)
|
|
|
|
|
|
|
|
|
|
|
|
| |
doesn't return correct
file size from MPI_File_get_size. Bypass this problem by replacing it with
stat. Add an option --disable-mpi-size in configure to indicate this function
doesn't work properly. Add a test in testpar/t_mpi.c, too. If it returns wrong
file size, print out a warning.
Tested on kagiso (parallel) because already tested the same change to v1.6 on
several platforms (kagiso, cobalt, copper, and sol).
|
| |
|
|
|
|
|
|
|
|
| |
Bug fix
The H5TB_find_field function was not correctly finding a string field name amongst a string list of parameters of field names in cases where the name is similar up to n characters.
Solution: added an extra verify condition with the string length
Tested: kagiso, simple fix
|
|
|
|
|
|
|
|
|
| |
copyright notice.
Tested platform:
Kagiso only since it is only a comment block change. If it works in one
machine, it should work in all, I hope. Still need to check the parallel
build on copper.
|
|
|
|
| |
bug fix on H5TBwrite_fields_index and name functions, the space on the H5Dwrite call was all selected
|
|
|
|
|
|
|
|
|
|
| |
Clean up some compiler warnings and resolve some inconsistenceis between
hsize_t and size_t in the interface.
Tested on:
FreeBSD/32 4.11 (sleipnir) w/threadsafe
Linux/32 2.4 (heping) w/FORTRAN & C++
Linux/64 2.4 (mir) w/enable-1.6-compat
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
code cleanup
Description:
changed the name of some variables to match the online documentation
Solution:
Platforms tested:
linux
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
| |
Code cleanup
Description:
Trim trailing whitespace in Makefile.am and C/C++ source files to make
diffing changes easier.
Platforms tested:
None necessary, whitespace only change
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Code cleanup
Description:
Big clean up on high-level library code, including:
- Removing include of HDF5 private header file(!)
- Reduce number of compiler warnings
- Untangle header files, etc.
Platforms tested:
FreeBSD 4.11 (sleipnir) w/C++
Linux 2.4/64 (mir) w/C++ & FORTRAN
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
removed some white space and add formatting
Description:
Solution:
Platforms tested:
linux
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
new feature
Description:
1) separated the HL library into "public" and "private" header files, with the same caracteristics as the basic library
2) added the public headers to hdf5.h (with a conditional include macro, defined in configure.in)
3) added the path to HL in all Makefile.am 's , because of the inclusion in hdf5.h
Solution:
Platforms tested:
linux 32, 64
AIX
solaris
with fortran and c++
(one packet table example fails)
Misc. update:
|
|
|
|
|
|
| |
Fixed the copyright notice.
Tested in heping.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Code cleanup
Description:
Trim trailing whitespace, which is making 'diff'ing the two branches
difficult.
Solution:
Ran this script in each directory:
foreach f (*.[ch] *.cpp)
sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f
end
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
|
|
|
|
|
|
|
|
|
|
|
| |
Code cleanup
Description:
Clean up various warnings reported by the Windows team.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
new tests for DS
Description:
add a test that ckecks if a scale being attached itself has scales attached (error)
add a test for the dataset being attached to is a reserved High Level class (image, palette, table)
Solution:
Platforms tested:
linux
solaris
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Added Packet Table to high-level APIs
Description:
The Packet Table is an API that allows the user to append records
("packets") to a table, and read the back again. It supports
fixed-length records with a defined datatype and variable-length
records. It also supports a "current record" index to track the
user's position in the table.
Solution:
The Packet Table code lives in hl/src, and its tests in hl/test.
Some code is shared between the H5TB table and the H5PT Packet Table
in the form of functions in H5HL_private.c.
Some documentation exists for a previous version of the API. Updated
documentation and C++ wrapper API coming soon.
Platforms tested:
sleipnir, eirene, copper, modi4
|
|
changed the name of the hl table files back to H5TB.c and H5TB.h
this can be done now because the H5TB.c (threaded binary trees) file was removed from the hdf5 library
Description:
Solution:
Platforms tested:
linux
Misc. update:
|