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Merge from Trunk
Description:
Merging all of my CFLAGS-related changes from trunk to 1.8
This includes revision #s: 17616, 17625, 17627, 17639, and 17643.
Tested:
h5committest and some additional checks on our FreeBSD as well
as NCSA's machines.
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- Updated bin/reconfigure to use latest version of automake (1.10.2).
Regenerated Makefile.in's by running bin/reconfigure.
- Added libtool version numbers to c++, fortran, hl, hl c++, and hl fortran
libraries.
Tested:
jam, liberty, smirom
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Make H5Dopen versioned and change all internal usage to use H5Dopen2
Add simple regression test for H5Dopen1
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
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Ran reconfigure to generate the Makefile.in files.
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Several bug fixes
Description:
Added config file for Cray X1 (previous file was misnamed)
Simplified some code in hyperslab.c test that seemed to have been
confusing compiler on Cray X1.
Fixed typo in config/commence.am
Cleaned up hl/src/Makefile.am
Solution:
All four fixes should be straightforward. The failure on Cray was
very difficult to debug, but involved arithmetic errors.
This change seems to fix it.
Platforms tested:
heping, copper, sol, some Cray X1 (more testing when system comes back up)
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Bug fix.
Description:
H5PTpublic.h was not included in hdf5_hl.h.
Added hdf5_hl.h to the installed header files list.
Platforms tested:
Heping.
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bug fix.
Description:
H5LTparse.h should not be installed. Removed it from the install header
files list.
Platforms tested:
h5committested.
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new feature
Description:
1) separated the HL library into "public" and "private" header files, with the same caracteristics as the basic library
2) added the public headers to hdf5.h (with a conditional include macro, defined in configure.in)
3) added the path to HL in all Makefile.am 's , because of the inclusion in hdf5.h
Solution:
Platforms tested:
linux 32, 64
AIX
solaris
with fortran and c++
(one packet table example fails)
Misc. update:
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Description: Renamed lex.yy.c to H5LTanalyze.c, y.tab.c to H5LTparse.c, and
y.tab.h to H5LTparse.h in hl/src. Changed definition of opaque type to ommit the tag.
Changed the test for opaque type in hl/test, too.
Platforms tested: h5committest, fuss, and sleipnir.
Misc. update: MANIFEST
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Bug fix
Description:
Fixed bug in hl/src Makefile that was deleting y.tab.c.
Running bin/reconfigure changed a few other files as well (somebody
probably updated Makefiles.am but forgot to bin/reconfigure).
Solution:
Automake in its wisdom adds the line "rm *.tab.c" to every distclean
in every directory. I assume that it assumes that such files are
generated during the build. Supplied an empty distclean-compile
target to remove this line from the Makefiles.in.
Platforms tested:
mir, sleipnir, shanti
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Description: Adding the new function H5LTtext_to_dtype() for converting text description to data type.
The next step will be H5LTdtype_to_text().
Solution: Use Lex and Yacc to do parsing of the text. H5LTanalyze.l is the lexer for analyzing the
input; H5LTparse.y is the parser. They are not part of HL library, but are used to generate lex.yy.c
(from H5LTanalyze.l) as well as y.tab.c and y.tab.h (from H5LTparse.y). The tools used to create
these source files are GNU FLEX and YACC on a Linux machine (fuss). The commands are "lex H5LTanalyze.l"
and "yacc -d H5LTparse.y". Detailed document will be added later.
Platforms tested: h5committest and fuss.
Misc. update: MANIFEST
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Fixed the copyright notice.
Tested in heping.
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Added Packet Table to high-level APIs
Description:
The Packet Table is an API that allows the user to append records
("packets") to a table, and read the back again. It supports
fixed-length records with a defined datatype and variable-length
records. It also supports a "current record" index to track the
user's position in the table.
Solution:
The Packet Table code lives in hl/src, and its tests in hl/test.
Some code is shared between the H5TB table and the H5PT Packet Table
in the form of functions in H5HL_private.c.
Some documentation exists for a previous version of the API. Updated
documentation and C++ wrapper API coming soon.
Platforms tested:
sleipnir, eirene, copper, modi4
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Configuration update
Description:
HDF5 now uses automake
Solution:
Ditto to previous checkin.
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