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* Modifications based on pull request review.Vailin Choi2017-04-261-2/+2
| | | | Made couple changes based on the review comments.
* Incorporate patch from GE Healthcare (HDFFV-9934)Vailin Choi2017-04-252-4/+83
| | | | | This is the same patch that had already been integrated to 1.8 branch (pull request #387). Tested on moohan, ostrich, platypus, emu, osx1010test, quail, kituo, mayll.
* Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-2527-174/+108
| | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* HDFFV-9875 enable static pdb and cleanup exportsAllen Byrne2017-02-031-1/+1
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* HDFFV-9875 Fix target exports and add static tools pdb filesAllen Byrne2017-02-021-0/+1
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* Update cmake min version and cmake command conventionAllen Byrne2017-01-101-4/+4
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* Description:Binh-Minh Ribler2016-10-201-6/+8
| | | | | | | | | | | | - Removed calls to H5Tget_native_type in the PT code. The application would need to do that if desired. - Added Abhi's program to tests to verify the fix. - This fix might have fixed HDFFV-9927, HDFFV-9042, and the issue reported by Barbara Jones from Ametek as well. Platforms tested: Linux/32 2.6 (jam) Linux/64 (jelly) Darwin (osx1010test)
* Add support for namespace and add tools to binaries configAllen Byrne2016-10-141-0/+1
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* [svn-r30289] Fix for HDFFV-9960 H5DOappend without append callback.Vailin Choi2016-08-141-20/+18
| | | | | This is the second part of the fix--see crucible review HDF5-383. Tested on mayll, platypus, osx1010test, emu, kituo, kite, quail, moohan, ostrich.
* [svn-r30285] Description:Quincey Koziol2016-08-131-2/+2
| | | | | | | | | More warning cleanups, bringing the build down to 25 unique types of warnings, with 550 warnings in 122 files (down from 28, 770, and 134). Tested on: MacOSX/64 10.11.5 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r30262] Fix for HDFFV-9960: H5DOappend will not fail if a dataset has ↵Vailin Choi2016-08-051-3/+6
| | | | | | no append callback registered. Tested on mayll, platypus, osx1010test, emu, moohan, kituo, ostrich, kite, quail.
* [svn-r29862] Convert source list names from *_SRCS to *_SOURCES.Allen Byrne2016-05-041-3/+5
| | | | Add/convert most tools to use new HDF5_TOOLS_DIR instead of HDF5_TOOLS_SRC_DIR CMake VAR.
* [svn-r29857] Description:Quincey Koziol2016-05-035-2/+724
| | | | | | | | Bring H5LD* routines from revise_chunks branch to trunk. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29850] Description:Quincey Koziol2016-05-012-0/+195
| | | | | | | | | | Bring H5DOappend(), H5P[s|g]et_object_flush_cb, and H5P[s|g]et_append_flush from revise_chunks branch to trunk. Brings along updated metadata cache entry tagging, and the internal object flush routine. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29800] Purpose: Fix memory leak - HDFFV-9700Binh-Minh Ribler2016-04-251-4/+1
| | | | | | | | | Description: Applied user's patch to fix memory leak. Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
* [svn-r29531] Normalization w/ revise_chunks in preparation for big merge.Dana Robinson2016-03-232-8/+4
| | | | | | | hl and bin directories Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial w/ Java, Fortran, & C++
* [svn-r29379] Add individual LT_VERS_* variables for wrapper libraries: c++, ↵Larry Knox2016-03-091-1/+1
| | | | | | | | | | | | | | | | fortran, java, hl, hl/c++, hl/fortran to so that the shared object version numbers can be incremented independently. Disabled auto-increment of shared object version numbers by h5vers. Files modified: config/lt_vers.am java/src/jni/Makefile.am hl/src/Makefile.am hl/c++/src/Makefile.am hl/fortran/src/Makefile.am c++/src/Makefile.am bin/h5vers fortran/src/Makefile.am
* [svn-r29269] Purpose: Improve Packet Table libraryBinh-Minh Ribler2016-03-042-226/+370
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: The Packet Table API used to have fixed-length and variable-length functions (i.e., H5PTcreate_fl and H5PTcreate_vl), but in 2006, the vlen functions were ifdef'ed out with VLPT_REMOVED, see HDFFV-442. The majority of this revision includes removing unused vlen stuff, adding various vlen tests, initial code cleanup, and first pass of commenting. Details: - Removed the VLPT_REMOVED ifdef, but keep H5PTis_varlen and the free function because they are useful or even needed, but the free function's name is changed to be more appropriate for both read/write buffers, i.e., H5PTfree_vlen_buff. - The new test file, test_packet_vlen.c, contains tests showing packet tables, containing various types of vlen data, can be created with the fixed-length function - Two accessor functions were added per HDFFV-8623/patch 003. /* Returns the ID of the dataset associated with the packet table */ hid_t H5PTget_dataset(hid_t table_id); /* Returns the ID of the datatype the packet table uses */ hid_t H5PTget_type(hid_t table_id); - Various cleanup: replacing 0/-1 with SUCCEED/FAIL and H5I_BADID with H5I_INVALID_HID, and removing many warnings. Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
* [svn-r29226] HDFFV-9552: merge in java code.Allen Byrne2016-02-291-1/+1
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* [svn-r28553] Merge of r28436 from revise_chunks. Cleans up warnings exposedDana Robinson2015-12-104-227/+241
| | | | | | | by gcc 5.2 in the flex/bison code. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
* [svn-r28340] Remove dependencies due to flex/bisonAllen Byrne2015-11-131-10/+0
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* [svn-r28336] Remove flex/bison generationAllen Byrne2015-11-131-72/+3
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* [svn-r28332] Updated autogen.sh to not run flex/bison.Dana Robinson2015-11-135-0/+5002
| | | | | | | | | This was giving a lot of users headaches and the parser code rarely changes. There is now a new script (bin/genparser) which can be run as needed. Tested on: Ubuntu 15.10 (x86_64 Linux 4.2.0) gcc 5.2.1, flex 2.5.39, bison 3.0.2
* [svn-r28019] fix mem leaks.Mohamad Chaarawi2015-10-091-2/+11
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* [svn-r27927] Fix dependencies of flex/bison files.Allen Byrne2015-10-011-2/+4
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* [svn-r27913] Need to create the directory for the gen filesAllen Byrne2015-09-291-0/+1
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* [svn-r27911] Add back in the build dirAllen Byrne2015-09-291-5/+5
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* [svn-r27910] Rework flex-bison generated files to eliminate dual depends ↵Allen Byrne2015-09-291-27/+21
| | | | when building both shared and static
* [svn-r27906] Remove header file name as it is not a direct target (derived ↵Allen Byrne2015-09-291-1/+1
| | | | during BISON process).
* [svn-r27905] Add depends to be sure file existsAllen Byrne2015-09-281-0/+2
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* [svn-r27904] Correct missing target name charsAllen Byrne2015-09-281-2/+2
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* [svn-r27895] Rework the generated file dependencies and commands.Allen Byrne2015-09-281-5/+1
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* [svn-r27846] Fix generated files process.Allen Byrne2015-09-211-0/+39
| | | | Add script for post processing of flex/bison files.
* [svn-r27828] Removed Perl-generated header files and H5LT parse code created ↵Dana Robinson2015-09-183-5139/+0
| | | | | | by flex/bison. Tested on: jam
* [svn-r27802] Added an explicit -I m4 to the aclocal line.Dana Robinson2015-09-162-0/+2
| | | | | | The files in the m4 directory were not getting picked up on some platforms. Tested on: jam
* [svn-r27799] Minor warning fixes in the high-level library.Dana Robinson2015-09-163-17/+21
| | | | Tested on: jam (too minor for h5committest)
* [svn-r27795] Removed some autotools generated files that were not caught byDana Robinson2015-09-151-1434/+0
| | | | | | the last checkin. Tested on: bin/chkmanifest
* [svn-r27794] Reintegration merge of features/autotools_rework branch with trunkDana Robinson2015-09-152-10/+53
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | NOTES: - Developers will have to run autogen.sh before building with the autotools. - autogen.sh takes the -p option to mimic the old bin/reconfigure behavior. - The generated error, overflow and version headers have been left in place. - The generated H5LT parser code has also been left in place. - There are no changes for CMake users at this time. Tested on: h5committest
| * [svn-r27729] add extra flags to the bison and flex command linesAllen Byrne2015-09-091-3/+3
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| * [svn-r27725] Add initial commands to properly build the generated files.Allen Byrne2015-09-091-5/+50
| | | | | | | | | | | | Added HDF5_GENERATE_HEADERS ON to cacheinit.cmake file. Tested: local linux
| * [svn-r27507] Merge of r27237-27500 from the trunk.Dana Robinson2015-08-142-12/+23
| |\ | | | | | | | | | | | | | | | | | | | | | Tested w/ h5committest NOTES: - The manifest may still be messed up. - Cmake fails since the dual binary work needs to be merged with this repo's CMake externals.
| * \ [svn-r27038] Merge of r26393-27031 from the trunk.Dana Robinson2015-05-072-31/+35
| |\ \ | | | | | | | | | | | | Tested on 64-bit linux VM w/ C++ and Fortran 2003
| * \ \ [svn-r26429] Merge of r26393-26428 from the trunk.Dana Robinson2015-03-114-18/+30
| |\ \ \ | | | | | | | | | | | | | | | Tested w/ h5committest
| * \ \ \ [svn-r26350] Merge of r26273-26348 from the trunk.Dana Robinson2015-03-042-1/+5
| |\ \ \ \ | | | | | | | | | | | | | | | | | | Tested on: h5committest
| * \ \ \ \ [svn-r26274] Merge of r26096 to r26271 from trunk.Dana Robinson2015-02-222-2/+2
| |\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | Tested on: jam - serial: C++/Fortran parallel: Fortran
| * | | | | | [svn-r26136] Updated autogen.sh to run flex and bison, replacing the ↵Dana Robinson2015-02-063-5099/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | (incomplete) bin/genltanalyze script, which has been deleted. Also removed the generated hl/src/H5LTparse.c/h and H5LTanalyze.c files. Part of: HDFFV-9120 Tested on: Local Ubuntu VM
| * | | | | | [svn-r26097] Removed configure and Makefile.in files from version control.Dana Robinson2015-02-021-1423/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Developers will now have to run bin/reconfigure (deprecated, will be removed soon) or autogen.sh after checking out code. Part of: HDFFV-9120 Tested on: jam with Fortran and C++
| * | | | | | [svn-r26096] Merged r26024-26095 from trunk.Dana Robinson2015-02-022-2/+2
| |\ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | Tested on: jam with Fortran and C++
| * | | | | | | [svn-r26069] Removed the option to selectively disable internal filters like ↵Dana Robinson2015-01-291-5/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | n-bit at compile time. Fixes HDFFV-9086 Tested on: jam, both serial and parallel w/ fortran & C++
| * | | | | | | [svn-r26051] Fix for HDFFV-9092Scot Breitenfeld2015-01-271-1/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Change AC_TRY_RUN TO AC_TRY_COMPILE Changed all the instances of AC_TRY_RUN for the Fortran and C++ tests to use AC_COMPILE_IFELSE and moved all the tests to new files in m4 directory: aclocal_cxx.m4 (for C++ tests) aclocal_fc.m4 (for Fortran tests) tested: jam
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