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* Added deprecated symbol wrappers for the H5DOwrite/read_chunkDana Robinson2018-05-041-1/+14
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* Updated commenting in the H5DO compat test.Dana Robinson2018-05-041-11/+9
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* Stripped out most of the duplicated functionality in the H5DODana Robinson2018-05-041-2046/+147
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* * Added H5DO compatibility functions.Dana Robinson2018-05-044-2/+2180
| | | | | * Changed the offset copy to use an array on the stack. * Yanked some unused #defines.
* Merge branch 'develop' into h5do_direct_chunk_hl_to_srcDana Robinson2018-04-301-4/+6
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| * TRILABS-20 set a compiler name on all project commandsAllen Byrne2018-04-201-1/+1
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| * TRILABS-19 Initial conversion of include_directories to targetsAllen Byrne2018-04-171-3/+5
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* | First stage of moving H5DOread/write_chunk() to src/ and makingDana Robinson2018-04-305-2868/+2
|/ | | | | | | | | | them H5D calls. * Moved H5DOread/write_chunk() to H5Dio.c and renamed to H5D*. * Moved the hl/test/test_dset_opt test to test/ and renamed to direct_chunk. * Moved the hl/test/dectris_hl_perf test to tools/test/perform and renamed to direct_write_perf. * Updated autotools and CMake files.
* Couple fixes to the test routine for HDFFV-10425.Vailin Choi2018-03-211-2/+2
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* Add test and release info for the fix to HDFFV-10425 test failure with ↵Vailin Choi2018-03-211-0/+143
| | | | H5DOwrite_chunk.
* Change CMake min to 3.10Allen Byrne2018-03-091-1/+1
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* Inc CMake min, Add new tests, rework test CMake filesAllen Byrne2018-02-271-1/+1
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* HDFFV-10345 spelling errorsAllen Byrne2018-02-051-4/+4
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* HDFFV-10385 rework java namesAllen Byrne2018-01-171-5/+0
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* Fixed many minor warnings.Dana Robinson2017-05-252-41/+38
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* Incorporate additional code changes for the H5DOread_chunk patch from GE ↵Vailin Choi2017-05-151-323/+809
| | | | | | | | | | Heathcare (HDFFV-9934) This is the similar set of changes that was checked in to 1.8 branch: Incorporate the code changes that were missing from the original patch: (1) Additional tests in hl/test/test_dset_opt.c (2) Fix in src/H5Dchunk.c for direct access when an entry is in chunk cache but not dirty Tested on platypus, ostrich, kituo, mayll, osx1010test, moohan, quail, emu.
* Merged HDFFV-10187 direct chunk overwrite bugfix to develop from 1.10 branch.Dana Robinson2017-05-121-0/+114
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* Incorporate patch from GE Healthcare (HDFFV-9934)Vailin Choi2017-04-251-84/+377
| | | | | This is the same patch that had already been integrated to 1.8 branch (pull request #387). Tested on moohan, ostrich, platypus, emu, osx1010test, quail, kituo, mayll.
* Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-2519-103/+90
| | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* Update CMake files and formattingAllen Byrne2017-03-011-3/+3
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* Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2017-01-121-1/+2
|\ | | | | | | | | | | * commit '089afc48561ba8838d6a515c6b00fc6f7032ca13': Updated the developer flags so that they respect gcc versions. Description: Added data files from the packet table vlen tests to the CHECK_CLEANFILES list. Platforms tested: Linux/64 (jelly)
| * Description:Binh-Minh Ribler2017-01-121-1/+2
| | | | | | | | | | | | | | Added data files from the packet table vlen tests to the CHECK_CLEANFILES list. Platforms tested: Linux/64 (jelly)
* | HDFFV-10094: upgrade cmake command conventionsAllen Byrne2017-01-111-1/+14
| | | | | | Also converted tests to use macros
* | Update cmake min version and cmake command conventionAllen Byrne2017-01-102-6/+6
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* Fix h5test.h include issueAllen Byrne2016-12-281-2/+2
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* Bring SWMR support in to the main development branch. (Finally!) More testsQuincey Koziol2016-12-021-4/+32
| | | | and the tool and API wrappers will be coming in over the weekend.
* Purpose: Fix Packet Table issues cont.Binh-Minh Ribler2016-10-241-13/+24
| | | | | | | | | Description: Misc cleanups and comments in tests. Platforms tested: Linux/32 2.6 (jam) Darwin (osx1010test) Linux/64 (jelly)
* Miscellaneous code cleanup.Binh-Minh Ribler2016-10-211-4/+2
| | | | | | Platforms tested: Linux/32 2.6 (jam) Darwin (osx1010test)
* Description:Binh-Minh Ribler2016-10-202-59/+56
| | | | | | | | | | | | - Removed calls to H5Tget_native_type in the PT code. The application would need to do that if desired. - Added Abhi's program to tests to verify the fix. - This fix might have fixed HDFFV-9927, HDFFV-9042, and the issue reported by Barbara Jones from Ametek as well. Platforms tested: Linux/32 2.6 (jam) Linux/64 (jelly) Darwin (osx1010test)
* Description:Quincey Koziol2016-09-291-2/+2
| | | | | | | | Cleanups from Dana's review. Tested on: MacOSX/64 10.11.5 (amazon) w/C++ & FORTRAN (h5committest forthcoming)
* Description:Quincey Koziol2016-09-271-1/+8
| | | | Further warning cleanups: from 667 warnings to 503.
* [svn-r30285] Description:Quincey Koziol2016-08-131-2/+0
| | | | | | | | | More warning cleanups, bringing the build down to 25 unique types of warnings, with 550 warnings in 122 files (down from 28, 770, and 134). Tested on: MacOSX/64 10.11.5 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r30262] Fix for HDFFV-9960: H5DOappend will not fail if a dataset has ↵Vailin Choi2016-08-051-0/+100
| | | | | | no append callback registered. Tested on mayll, platypus, osx1010test, emu, moohan, kituo, ostrich, kite, quail.
* [svn-r30238] Follow-on to HDFFV-9928: remove unconditional call of time.h ↵Allen Byrne2016-08-011-4/+0
| | | | type headers. Also remove duplicated includes when h5private.h is used.
* [svn-r30237] HDFFV-9939: Change cmake commands to reduce POST_BUILD custom ↵Allen Byrne2016-08-011-26/+38
| | | | commands. Fixes possible overruns on windows command lines.
* [svn-r30189] Description:Quincey Koziol2016-07-182-2/+0
| | | | | | | | | Clean up more warnings: drop the warning count from ~1310 down to ~940, with only 31 types of warnings in 148 files (down from 38 types in 167 files). Tested on: MacOSX/64 10.11.5 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r30158] Description:Quincey Koziol2016-07-071-140/+142
| | | | | | | | More warning cleanups. This brings us down to ~1300 warnings in 167 files Tested on: MacOSX/64 10.11.5 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r30075] Description:Quincey Koziol2016-06-142-13/+60
| | | | | | | | | | Bring object/dataset/group/named datatype features from revise_chunks branch to trunk. Also CMake support for h5format_convert and a bunch of misc. cleanups. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29878] Add LD tests to CMake.Allen Byrne2016-05-043-22/+98
| | | | Add include guards and Windows guards to dectris_hl_perf.c file.
* [svn-r29857] Description:Quincey Koziol2016-05-034-2/+1811
| | | | | | | | Bring H5LD* routines from revise_chunks branch to trunk. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29850] Description:Quincey Koziol2016-05-012-2/+1199
| | | | | | | | | | Bring H5DOappend(), H5P[s|g]et_object_flush_cb, and H5P[s|g]et_append_flush from revise_chunks branch to trunk. Brings along updated metadata cache entry tagging, and the internal object flush routine. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29603] HDFFV-9746 Add test for "/" for H5LTpath_validScot Breitenfeld2016-04-011-0/+23
| | | | Tested: jam (gnu)
* [svn-r29554] Description:Binh-Minh Ribler2016-03-241-1/+0
| | | | Removed an extra line in the Copyright block. No need to test.
* [svn-r29531] Normalization w/ revise_chunks in preparation for big merge.Dana Robinson2016-03-232-2/+1
| | | | | | | hl and bin directories Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial w/ Java, Fortran, & C++
* [svn-r29360] Purpose: Adding testBinh-Minh Ribler2016-03-091-5/+601
| | | | | | | | | | Description: Added several tests for packet table that were missing from the previous update. Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
* [svn-r29295] Replaced H5Acreate with H5Acreate2 in ↵Larry Knox2016-03-061-1/+1
| | | | | | hl/test/test_packet_vlen.c line 758 to eliminate error with configure option --wit-default-api-version=v16. Tested with option and h5committest.new.
* [svn-r29272] Add code to deal with two source files for test_packet test.Allen Byrne2016-03-041-1/+11
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* [svn-r29269] Purpose: Improve Packet Table libraryBinh-Minh Ribler2016-03-044-350/+1273
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: The Packet Table API used to have fixed-length and variable-length functions (i.e., H5PTcreate_fl and H5PTcreate_vl), but in 2006, the vlen functions were ifdef'ed out with VLPT_REMOVED, see HDFFV-442. The majority of this revision includes removing unused vlen stuff, adding various vlen tests, initial code cleanup, and first pass of commenting. Details: - Removed the VLPT_REMOVED ifdef, but keep H5PTis_varlen and the free function because they are useful or even needed, but the free function's name is changed to be more appropriate for both read/write buffers, i.e., H5PTfree_vlen_buff. - The new test file, test_packet_vlen.c, contains tests showing packet tables, containing various types of vlen data, can be created with the fixed-length function - Two accessor functions were added per HDFFV-8623/patch 003. /* Returns the ID of the dataset associated with the packet table */ hid_t H5PTget_dataset(hid_t table_id); /* Returns the ID of the datatype the packet table uses */ hid_t H5PTget_type(hid_t table_id); - Various cleanup: replacing 0/-1 with SUCCEED/FAIL and H5I_BADID with H5I_INVALID_HID, and removing many warnings. Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
* [svn-r28346] Description:Quincey Koziol2015-11-151-3/+5
| | | | | | | | Bring in cleanups from revise_chunks branch. Tested on: MacOSX/64 10.11.1 (amazon) w/serial & parallel (too minor to require full h5committest)
* [svn-r28017] mem leak fix.Mohamad Chaarawi2015-10-091-0/+1
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