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* Description:Binh-Minh Ribler2016-10-241-194/+192
| | | | | | | | | | | | | | | | | | | | | - Merged my commits to develop that fixed HDFFV-9758: b3b7ae087edbc20891a088db2f4e4f83e186c8b0 14e308b2e6eada778818abf53949ceef0e7b2a34 - Merged a commit from trunk by Quincey: commit ec2fbe0883f9e76df60bcfbebbd4b6f62d5a09e6 Author: Quincey Koziol <koziol@hdfgroup.org> Date: Thu Jul 7 13:54:11 2016 -0500 [svn-r30158] Description: More warning cleanups. This brings us down to ~1300 warnings in 167 Tested on: MacOSX/64 10.11.5 (amazon) w/serial & parallel (h5committest forthcoming) Platforms tested: Linux/32 2.6 (jam) Darwin (osx1010test)
* Purpose: Fixed Packet Table issuesBinh-Minh Ribler2016-10-241-18/+28
| | | | | | | | | | | | | | | | | | | | | | | Description: - Removed calls to H5Tget_native_type from PT APIs because it is up to the application, whether it wants the buffer to be read into memory in the machine’s native architecture. Currently, however, the PT doesn't allow an application to specify memory datatype. Perhaps, a new API can be added to provide that capability. - Added calls to H5Tcopy to H5PTcreate/H5PTcreate_fl/H5PTopen to save a copy of the application's datatype or the dataset's datatype. - Added various missing H5Tclose to the packet table tests, and various error checkings. Note: leave out changes to test_packet_vlen.c for this commit to wait on QAK about merging the commit ec2fbe0883f9e76df60bcfbebbd4b6f62d5a09e6 [svn-r30158] first. This commit is associated with develop's commits: 14e308b2e6eada778818abf53949ceef0e7b2a34 be613da6b804e56a51f43a053bf35d898dccb420 Platforms tested: Linux/32 2.6 (jam) Linux/64 (jelly) Darwin (osx1010test)
* [svn-r30171] HDFFV-9939: convert cmake copy commands to reduce issue with ↵Allen Byrne2016-07-121-24/+38
| | | | | | | too long command lines on some platforms. Also, refactor hl/tools/gif3h5 cmake files. JAVA-1920: add plugin test with plugin that depends on hdf5
* [svn-r29690] Purpose: Merge PT improvements from trunkBinh-Minh Ribler2016-04-136-356/+1889
| | | | | | | | | | | | | | Description: Merged from trunk: r29269: Improve Packet Table library r29295: Replaced H5Acreate with H5Acreate2 (by Larry) r29360: Adding missing tests r29364: Improve C++ Packet Table library r29554: Removed extra line in Copyright Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
* [svn-r29604] HDFFV-9746 Add test for "/" for H5LTpath_validScot Breitenfeld2016-04-011-0/+23
| | | | Tested: jam (gnu)
* [svn-r27532] Merge of CMake dual-binary changes from CMake branch to 1.8Allen Byrne2015-08-191-4/+16
| | | | Tested: local linux (CMake branch has been tested on Windows)
* [svn-r27165] Merge 27133 & 27158 from trunk:Mohamad Chaarawi2015-06-081-4/+4
| | | | | | | | | - Add a new attribute function characterstic for format: * H5_ATTR_FORMAT(X,Y,Z) __attribute__((format(X, Y, Z))) - Rename UNUSED attribute characterstic to H5_ATTR_UNUSED. - Rename NORETURN attribute characterstic to H5_ATTR_NORETURN tested with h5committest.
* [svn-r26728] Merge trunk reviwions 26669 and 26670.Larry Knox2015-04-041-1/+0
| | | | | | Removed from configure.ac VPATH section, LONE_COLON check and checks for redundant addition of /usr/include and /usr/lib to compile flags, with reconfigure. Tested h5committest
* [svn-r26700] Generators are only built staticAllen Byrne2015-04-011-2/+2
| | | | Plugin test for disable state does not print error stack and does not print FAILED
* [svn-r26697] HDFFV-9131: Remove obsolete/unneeded sections.Allen Byrne2015-04-011-2/+0
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* [svn-r26600] Fix CMake target calls to add new parameterAllen Byrne2015-03-261-2/+2
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* [svn-r26582] Merge r26509 from trunkJerome Soumagne2015-03-251-2/+0
| | | | Run reconfigure after merges from autotools_rework branch
* [svn-r26576] Merged r26321,r26405,r26417 from the trunk into the branch.Scot Breitenfeld2015-03-256-42/+129
| | | | Tested: h5committest
* [svn-r26398] Merges r26333 from trunkDana Robinson2015-03-093-28/+28
| | | | | | | | | | | | | | | | Eliminates gcc warnings due to -Wunsuffixed-float-constants. - Adds 'F' suffixes for most float constants. - A few constants MUST be of type double. These now receive the long double L suffix and are then cast to double. I do this via a new H5_DOUBLE() macro which was added to H5private.h. - Additionally, some 1.8-specific float suffixes were added. Fixes: HDFFV-9148 Tested on: h5committest
* [svn-r26395] Merges r26329 from trunkDana Robinson2015-03-091-5/+0
| | | | | | | | | | | | | | Removed the configure option that allows selective disabling of individual internal filters (fletcher32, shuffle, etc.). This feature mucked up the code with a lot of #ifdefs, saved very little space and was not scalable to a general scheme for library size reduction. We've decided to remove the feature while we investigate a more general scheme for decreasing the library size. Fixes: HDFFV-9086 Tested on: h5committest
* [svn-r26371] Update cmake mininum versionAllen Byrne2015-03-051-1/+1
| | | | Update windows wix cpack process.
* [svn-r26314] Brought autotools related changes from the trunk to the branch, ↵Scot Breitenfeld2015-02-261-1/+2
| | | | r26188 r26280
* [svn-r26312] Merged r26294 from the trunk into the branch.Scot Breitenfeld2015-02-261-0/+30
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* [svn-r26307] merged r26172 from the trunk.Scot Breitenfeld2015-02-251-1/+0
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* [svn-r26304] bring 26303 from trunk:Mohamad Chaarawi2015-02-251-6/+6
| | | | remove files with .clog2 extension generated by MPE when doing make clean
* [svn-r26224] merge 26180 from trunk:vms_last_support_1_8Mohamad Chaarawi2015-02-181-1/+0
| | | | | | | | | | configure fixes for HDFFV-9068,9069,9096,9097,9135 from autotools_rework branch: - Remove Infering parallel compilers (C and Fortran) from configure.ac - Remove restriction to build shared with parallel - Cleanup parallel sections in configure.ac - remove large file support checks - MPE fixes.
* [svn-r25643] merged change 23241 into the branch.Scot Breitenfeld2014-10-011-3/+3
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* [svn-r25642] merged changes 25614,25629,25631 into branch.Scot Breitenfeld2014-09-302-2/+45
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* [svn-r25497] Description:Quincey Koziol2014-07-304-15/+14
| | | | | | | | | | Merge changes that correspond to the 64-bit ID changes (without the actual switch to 64-bit IDs) to the 1.8 release branch. (Plus a few minor cleanups and alignments with the trunk that aren't on the branch) Tested on: Mac OSX/64 10.9.4 (amazon) w/C++ & FORTRAN (h5committested on branch already for a week)
* [svn-r25402] Bring 25397/8 from trunk:Mohamad Chaarawi2014-07-101-1/+0
| | | | | | | - remove configure checks for MPI_File_get_size and Big MPI_File_set_size as they are supported by MPIO implementations today. - fix bug in t_mpi.c (HDFFV-8856) tested with h5committest.
* [svn-r25400] bug fixes where a wrong type was used instead of hid_t.Mohamad Chaarawi2014-07-091-2/+2
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* [svn-r25198] Description:Quincey Koziol2014-05-181-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r25197 from trunk to 1.8 branch: Bring changes from hdf5_1_8_coverity branch back to trunk: r20878: Issue 76: Check if H5Tget_nmembers(type) fails and simply return(FALSE). Also move printf to after check. r20880: Issue 192: Create ret_val var set to -1. Add out label for failures to jump to, return ret_val at bottom. r20882: Fixes for coverity: 1) bug #1679: remove dead code in test/mf.c 2) bug #1680: remove dead code in tools/lib/h5diff_dset.c r20883: Fix coverity issue 585 Description: Changed variable "c" in processStrData in h5import.c to an int, to match fgetc return value, and removed call to feof, instead checking if c == EOF. Tested on: MacOSX/64 10.9.3 (amazon) w/C++, FORTRAN & parallel (too minor to require h5committest)
* [svn-r25106] Removed LT_ADD_LIBHDF5_DEPENDENCY configure conditional to roll ↵Larry Knox2014-04-251-1/+0
| | | | | | | | back fix for removing rpaths from lib files. The fix also removed dependencies on libhdf5, etc. when the --disable-sharedlib-rpath configure option was invoked. Added instead configure variable hardcode_into_lib=no. This removes rpath from lib files on Linux and solaris machines. Tested with h5committest on jam, koala, ostrich and platypus (cmake), and on emu and kite.
* [svn-r25014] Purpose:Dana Robinson2014-04-111-6/+6
| | | | | | | | | | | | | | | | | Merge of r24937 from the trunk Adds H5free_memory to the API. This function should be used to free memory allocated by the library (e.g., returned values from H5Tget_tag, H5Pget_class_name, etc.). This is mainly to help Windows applications deal with multiple CRT instances, but can also be helpful when a debug memory manager is being used or when the HDF5 API is being wrapped for managed languages like Python and Java. Tested on: 32-bit LE linux (jam) with fortran and C++ 64-bit BE linux (ostrich) 64-bit LE linux (koala)
* [svn-r24980] HDFFV-8290: Merge automake 1.14.1 changes from trunkAllen Byrne2014-04-072-64/+498
| | | | Tested: h5committest
* [svn-r24906] Merge latest CMake changes from trunk.Allen Byrne2014-03-262-32/+32
| | | | Tested: local linux
* [svn-r24894] Description:Quincey Koziol2014-03-251-2/+5
| | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r24869 & r24875 from trunk to 1.8 branch: Clean up more compiler warnings, plus merge a few Coverity bug fixes from the hdf5_1_8_coverity branch back to the trunk: r20877: Purpose: Fix coverity issue 1723 Description: Modified test_generate in hl/test_image to close file "f" before exit, even if an error occurs. r20879: Issue 63: change check of return of H5Tget_nmembers to <=0. No need to go futher if call fails as well as empty. r20881: Coverity #659 in Run 46: I changed the Line 442 where it tries to check whether FLAG_PRINTED is TRUE. But it had just been set to FALSE. I took out the condition check in the print statement. Tested on: Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & Parallel (daily tested on trunk)
* [svn-r24878] Description:Quincey Koziol2014-03-241-1/+0
| | | | | | | | | | | | | | | | | | | | | Bring r24864 from trunk to 1.8 branch: Remove all traces of MPI-POSIX VFD and GPFS detection/code. Remove remaining traces of stream VFD. Remove testpar/t_posix_compliant test (it's not actually verifying anything). Clean up H5D__mpio_opt_possible() further. Moved environment variable that disables MPI collective operations into MPI-IO VFD (instead of it being in src/H5S.c). A few other small code cleanups. Tested on: Mac OSX/64 10.9.2 (amazon) w/parallel & serial (daily tested on trunk)
* [svn-r24810] Description:Quincey Koziol2014-03-171-10/+14
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r24803 & r24804 from trunk to 1.8 branch: r24804: Brought changes from Coverity branch back to trunk, and cleaned up misc. other warnings & formatting issues: r20833: Fixed Coverity 667 and 668 with real integer overflow tests this time. r20834: Use HDstrncpy and HDstrncat. --gh r20835: Change to use strncpy - use base_len + 1 for line 156, use HDstrlen(path) + 1 for line 159 r20836: Fixed coverity 585 by casting output of fgetc() to a char. r20837: Changed sprintf calls to snprintf with size 1 less than the allocated buffer to address coverity issue #967. r24803: Rename GCC_DIAG_OFF/ON macros to H5_GCC_DIAG_OFF/ON and move from src/H5private.h to src/H5public.h. Wrap typedef of hsize_t and hssize_t in DIAG_OFF(long-long) macros. Clean up a bunch of "macro '-' is unused" warnings. Tested on: Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & parallel (too minor to require h5committest)
* [svn-r24732] Fix for reconfigure, which fails because ↵Larry Knox2014-02-221-0/+1
| | | | | | LT_ADD_LIBHDF5_DEPENDENCY is used in Makefiles but the declaration in configure.ac is missing. Copied declaration from trunk. Tested with h5committest on jam ostrich koala and platypus(cmake).
* [svn-r24393] Cleanup testfiles from scripts. Update lists of files to be ↵Allen Byrne2013-11-011-0/+3
| | | | | | cleaned. CMake update to clean testfiles. Tested: local cmake, autotools
* [svn-r24072] Merge trunk cmake changes to 1.8 branch. Allen Byrne2013-08-262-60/+80
| | | | | | | Also add default switch blocks to h5import. Merge h5dump any_path option from trunk. Tested: local linux
* [svn-r24032] Description:Quincey Koziol2013-08-201-1/+1
| | | | | | | | | | Bring r24030 from trunk to 1.8 branch: Clean up more compiler warnings. Tested on: Mac OSX/64 10.8.4 (amazon) w/gcc, C++ & FORTRAN (too minor to require h5committest)
* [svn-r24021] Description:Quincey Koziol2013-08-181-2/+2
| | | | | | | | | | Bring r24020 from trunk to 1.8 branch: Clean up compiler warnings Tested on: Mac OSX/64 10.8.4 (amazon) w/C++ & FORTRAN (too minor to require h5committest)
* [svn-r24012] Description:Quincey Koziol2013-08-151-1/+1
| | | | | | | | | | Bring r24011 from trunk to 1.8 branch: Clean up a few warnings Tested on: Mac OSX 10.8.4 (amazon) w/C++ & FORTRAN (too minor to require h5committest)
* [svn-r23869] HDFFV-8302: replace (v)snprintf with _(v)snprintf for windows. ↵Allen Byrne2013-07-081-0/+9
| | | | | | | | Merge from trunk along with other windows functions and HD prefix corrections. HDFFV-8394: Add cmake code to package examples Tested: local linux
* [svn-r23771] HDFFV-8434,-8437,-8445,-8447,-8461: Merge changes from Trunk.Allen Byrne2013-06-141-0/+2
| | | | Tested: local linux
* [svn-r23696] Description:Quincey Koziol2013-05-111-68/+124
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r23695 from trunk to 1.8 branch: Clean up warnings in H5Tconv.c (down to _only_ 9000 lines of output now!) Merge changes from Coverity branch back to trunk: r20684: Fix for coverity bug #1721 which was due to the fix for coverity bug #943. r20685: Use HDstrncpy. --gh r20761: Purpose: Fix valgrind issues Description: Free image_data and data as appropriate in test_image. r20762: Purpose: Fix coverity issue 600 Description: Add check for return value of H5O_close in H5Ocopy. Also cleaned up various warnings. r20763: Purpose: Fix valgrind issues with h5stat Description: Modified h5stat to free "iter" before exit, and free "hand" before exit if parse_command_line exits directly. r20764: fixed coverity issues: 69, 327, 614, 684, 685, 696, 697, 1681, 967, 826, 660, 80 r20765: Fixed coverity bug 668 Pulled x * y * z multiply out of malloc operand into a separate n_elements variable to quiet integer overflow warning. No actual integer overflow tests are performed since it's just a test program but I did add a check that n_elements is >= 1. I also changed an error condition from doing its own close and returning -1 to "goto out;" like the rest of the program. r20766: Fixed coverity bug 667 Pulled x * y * z multiply out of malloc operand into a separate n_elements variable to quiet integer overflow warning. No actual integer overflow tests are performed since it's just a test program. Tested on: Mac OSX/64 10.8.3 (amazon) w/C++ & FORTRAN (h5committest upcoming)
* [svn-r23598] Description:Quincey Koziol2013-04-171-404/+290
| | | | | | | | | | | Bring r23597 from trunk back to 1.8 branch: Bring r20683 from Coverity branch back to trunk: Isues 1309-1333: Changed strcpy/strcat to strncpy/strncat with maximum size expe Tested on: Max OSX/64 10.8.3 (amazon) w/C++ & FORTRAN
* [svn-r23413] Add test depends on clear test. Occasional failures.Allen Byrne2013-03-211-0/+7
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* [svn-r23324] Snapshot version 1.8 release 11 (snap11)HDF Tester2013-03-041-1/+1
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* [svn-r23291] brought r23241 into the branch.Scot Breitenfeld2013-02-181-4/+4
| | | | | Fix for: HDFFV-7596 H5DSget_scale returns size that includes NULL termination and H5DSget_label returns size NOT including NULL termination
* [svn-r23211] Merge trunk CMake changes for minimum cmake version of 2.8.10. ↵Allen Byrne2013-01-311-1/+1
| | | | | | This was prompted by HDFFV-8227, OS X requires latest version of cmake for proper support. Tested: local linux
* [svn-r23182] I'm merging the changes for DECTRIS project from the trunk ↵Raymond Lu2013-01-216-13/+1803
| | | | | | (r23162). Tested on koala, jam, ostrich.
* [svn-r23122] Brought revisions from the trunk into the branch:Scot Breitenfeld2012-12-315-4/+4
| | | | | | | r23116-23118 : HDFFV-2686: Remove the ptExampleVL.c example from the source code HDFFV-422: Change extention of the binary files from hdf5 to h5 Tested: jam (gnu)
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