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* Run bin/reconfigure to propagate fortran mod change to configure and (#1952)Larry Knox2022-07-291-0/+1
| | | Makefile.in files.
* clang 13 format #1933 (#1941)Allen Byrne2022-07-2810-91/+91
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* Add missing files for enabling doxygen and run bin/reconfigure. (#1246)Larry Knox2021-12-021-2/+49
| | | | | | * Add missing files for enabling doxygen and run bin/reconfigure. * Make default to build high-level tools the same as default for high-level library.
* Merge Fixed HL_test_packet, incorrect length assignment (#1103)Allen Byrne2021-10-271-2/+2
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* 1.8 Merge Remove clang warnings from develop (#1099)Allen Byrne2021-10-196-70/+73
| | | | | * Merge Remove clang warnings from develop * revert HD prefix
* 1.8 Merge HDFFV-11266 - add option to build HL tools #1018 (#1022)Allen Byrne2021-09-171-0/+1
| | | | | | | * Merge HDFFV-11266 - add option to build HL tools #1018 * Update configure and Makefile.ins with bin/reconfigure. Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
* 1 8 update copyright headers (#1004)Larry Knox2021-09-161-1/+1
| | | | | | | | | | | | | | | * Update copyright headers with reproduction notice in 5 files (#993) * Update copyright headers with reproduction notice in 5 files that did not match terms in COPYING file . * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Commit changes to Makefile.ins and 4 src/H5E*.h files from running bin/reconfigure. Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* 18 copying update (#565)Larry Knox2021-04-221-13/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * close #195. (#196) * Update HDF5PluginMacros.cmake * Update HDF5PluginMacros.cmake * Restores maintainer mode in the autotools (#200) Maintainer mode should be enabled in development branches. Also adds helpful commenting. Add script bin/switch_maint_mode. Add file changes generated by bin reconfigure in src/H5Edefin.h src/H5Einit.h src/H5Epubgen.h src/H5Eterm.h * Update MANIFEST for switch_maint_mode. * Update so numbers to match 1.8.22 release. * Updated configure with reconfigure. * Updates and corrections following HDF5 1.8.22 release. * Commit Makefile.ins with so version numbers updated by bin/reconfigure. * Fix undefined left shifting of negative numbers (#338) Undefined Bahavior Sanitizer errored here about left shifting negative numbers. * Update top-level COPYING file and remove COPYING files from subdirectories. * Update top-level COPYING file and remove COPYING files from subdirectories (#561) * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING (license) file. * Add release_docs/code-conventions.md file. * Add script to test h5py. * Fix script error. * Add file h5pytest.yml. * Test declaration of counter variables in for loops. * Committing clang-format changes * Committing clang-format changes * Added [] to line 126 of H5LTanalyze.l. Ran bin/genparser with flex v2.6.4 and Bison v3.0.4 on jelly. * Revert "Added [] to line 126 of H5LTanalyze.l." This reverts commit e4a9cee441efa75b16a8ee030c86189e186dd266. * Revert extra commits to match canonical develop. * Update top-level COPYING file and remove COPYING files from subdirectories. * Remove subdirectory COPYING files from MANIFEST. Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Remove non-existant file from MANIFEST. Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> Co-authored-by: Sean McBride <sean@rogue-research.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* 1 8 Merge dev changes for long double and cmake (#548)Allen Byrne2021-04-204-7/+28
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Update supported platforms * Merge PR#3 changes from develop * # WARNING: head commit changed in the meantime Merge gcc 10 diagnostics option from develop Merge CMake changes from develop Merge warnings from develop Merge #318 OSX changes from develop Merge tools changes from develop Merge test macros from develop * Format updates * Fix missing semicolon and format fix * Format update * Correct actions, remove java option * Update autotools build files * Add testfiles * Fix configure issue with make flags * Init fapls to default * Update generated files and fix h5repack id closure * update format * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup whitespace cleanup tools sync * format alignment * initialize vars * revert H5private change * Merge #380 from develop * Split format source and commit changes on repo push * Change windows TS to use older VS. * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update unsupported types with precision Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* 1 8 Merges from develop (#418)Allen Byrne2021-03-031-3/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Update supported platforms * Merge PR#3 changes from develop * # WARNING: head commit changed in the meantime Merge gcc 10 diagnostics option from develop Merge CMake changes from develop Merge warnings from develop Merge #318 OSX changes from develop Merge tools changes from develop Merge test macros from develop * Format updates * Fix missing semicolon and format fix * Format update * Correct actions, remove java option * Update autotools build files * Add testfiles * Fix configure issue with make flags * Init fapls to default * Update generated files and fix h5repack id closure * update format * Merges from develop #358 patches from vtk #361 fix header guard spelling
* HDF5 1 8 merge of recent changes and tools (#353)Allen Byrne2021-02-228-32/+19
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Update supported platforms * Merge PR#3 changes from develop * # WARNING: head commit changed in the meantime Merge gcc 10 diagnostics option from develop Merge CMake changes from develop Merge warnings from develop Merge #318 OSX changes from develop Merge tools changes from develop Merge test macros from develop * Format updates * Fix missing semicolon and format fix * Format update * Correct actions, remove java option * Update autotools build files * Add testfiles * Fix configure issue with make flags * Init fapls to default * Update generated files and fix h5repack id closure * update format
* 1 8 changes for sanitize=address (#315)Allen Byrne2021-02-051-1/+1
| | | | | * Update supported platforms * Merge PR#3 changes from develop
* Update HDF5 1.8 copyright headers with updated copyright URL (#148)Larry Knox2020-12-0417-17/+17
| | | | | | | * Update URL for COPYING file in copyright headers. * Make fortran copyright headers uniformly spaced. * Update url for Copyright file in c++/src/footer.html.
* Multiple changes to bring branch up-to-date (#87)Allen Byrne2020-11-201-4/+4
| | | | | Correct TARGET variable and CMake config file location. Add option to allow filter plugins to be built inline. Update CMake tools macros.
* Source formattedAllen Byrne2020-10-0112-6477/+6590
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* Merge clang-format changes from developAllen Byrne2020-10-012-256/+293
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* Update configure and Makefile.ins after bin/reconfigure.Larry Knox2020-06-221-1/+2
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* Fix ifort warning flag.Larry Knox2020-05-041-0/+3
| | | | | | | | Restore AC_DEFUN([PAC_PROG_FC_DEFAULT_REALisDBLE] in m4/aclocal_fc.m4. Add --enable-symbols, --enable-profiling, and --enable-optimization options to autotools configure; all configure flags for --enable-production and --disable-production should match HDF5 1.10 and 1.12 production and debug default flags.
* Update to use optimization flags, C++ error flags, and correctLarry Knox2020-04-301-0/+2
| | | | libhdf5.settings.in to remove unworkable changes.
* TRILAB-192 - merge changes from developAllen Byrne2020-04-071-0/+4
| | | | Single source, config files, for warnings for both autotools and CMake. Update CMake libraries, tools, tests to use correct flags.
* Autotools reconfigure updateAllen Byrne2020-03-311-2/+3
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* TRILAB-192 merging warnings changes from developAllen Byrne2020-03-311-1/+0
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* Merge changes from other branchesAllen Byrne2020-02-291-1/+1
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* Merfge changes to CMake test options and add sanitizersAllen Byrne2020-01-201-1/+3
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* Ran bin/reconfigurebyrn2019-10-071-0/+3
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* Add changes to Makefile.in files and four H5e*.h files from running ↵Larry Knox2019-08-281-4/+5
| | | | bin/reconfigur.
* Fix merge issues for MPIAllen Byrne2019-08-231-6/+6
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* OESS-29 Fix shared MPI builds, more HD prefixAllen Byrne2019-08-226-92/+92
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* Correct test logicAllen Byrne2019-08-181-5/+5
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* Merge mostly whitespace changes from 1.10 branchAllen Byrne2019-08-1810-879/+870
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* Merge of HDFFV-10845, 10529 from developAllen Byrne2019-07-273-195/+221
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* Reconfigured autoconf filesdpopat2019-07-191-0/+2
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* Add fixes that were mistakenly omitted from merge of pull request 1594Neil Fortner2019-05-091-2/+2
| | | | to 1.8 branch.
* Fix issue with direct chunk write not updating the "last chunk" indexNeil Fortner2019-05-071-5/+216
| | | | | cache. Fix issues involving datasets being "not allocated" when they contain cached raw data.
* Merge in CMake changes from developAllen Byrne2019-04-041-2/+2
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* Merge CMake changes from 1.10 to 1.8Allen Byrne2018-10-021-12/+13
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* Change CMake min to 3.10Allen Byrne2018-03-091-1/+1
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* HDFFV-10392,10393,01385 merge from developAllen Byrne2018-01-221-5/+1
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* Add assignment to get value from environment variable realtimeOutput.lrknox2017-12-041-22/+56
| | | | Propagate changes to Makefile.ins with bin/reconfigure.
* HDFFV-10321 merge from developAllen Byrne2017-11-021-1/+1
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* Merge branch '1.8/master' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 ↵lrknox2017-08-251-4/+2
|\ | | | | | | into hdf5_1_8
| * Disable building of libdynlib* dynamically loaded plugin test librarieslrknox2017-06-141-0/+1
| | | | | | | | | | | | | | on CYGWIN. Added known problem entry to RELEASE.txt. Set version for 1.8.19 release. Barbara updated contents of README.txt file.
| * Moved libdynlib* plugin test libraries to noist_LT_LIBRARIES with addedlrknox2017-06-121-4/+1
| | | | | | | | | | | | | | flag '-rpath /nowhere' to stop them being installed while keeping them from linking with libhdf5, etc. Incremented version to 1.8.19-pre1 and ran bin/release to create tar and zip files for testing.
* | generated reconfigure files for configure changesM. Scot Breitenfeld2017-08-041-0/+1
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* Update text in COPYING files in subdirectories to match changes tolrknox2017-05-242-7/+15
| | | | | | | | | copyright notices in source files. Update Copyright notices in acsite.m4 and bin/yodconfigure that were overlooked by chkcopyright. Remove broken and unnecessary urls from comments in hl/fortran/src/H5IMcc.c and hl/src/H5IM.c. Commit bin/reconfigure changes to generated files.
* Merge branch 'hdf5_1_8' of ↵lrknox2017-05-201-2/+14
|\ | | | | | | https://bitbucket.hdfgroup.org/scm/~lrknox/hdf5_lrk into hdf5_1_8
| * Minor modifications for HDFFV-9934Vailin Choi2017-05-181-2/+14
| | | | | | | | | | Print out failure/success messages from running the tests in hl/test/test_dset_opt.c. Tested on emu, quail, kituo, platypus.
* | Change copyright headers to replace url referring to file to belrknox2017-05-1615-90/+60
|/ | | | removed and replace it with new url for COPYING file.
* Adds a new H5DO HL test that ensures chunk overwrites work properly.Dana Robinson2017-05-121-12/+125
| | | | Part of HDFFV-10187.
* Windows does not know what a uint isAllen Byrne2017-05-111-88/+88
| | | Index value used in math operation with hsize_t