| Commit message (Collapse) | Author | Age | Files | Lines |
... | |
|
|
|
|
|
| |
Code cleaning regarding formatting and indentation
Tested linux
|
|
|
|
|
|
|
|
|
|
|
| |
New feature
Add a tests script for h52gif tool. A simple script that just runs the
tool from a pre-saved HDF5 file and produces a gif file. A HDF5 test
generator program is also added
Note: the .am file needs further development, right now it is not
producing the test
|
|
|
|
|
|
|
|
| |
some comments in the
template file config/Makefile.am.blank.
This is just a cleanup checkin. Tested on kagiso.
|
|
|
|
|
|
|
|
| |
bin/makehelp (formatting
the output in the makefile was pretty hard).
Tested that make still works on kagiso; no code changes at all.
|
|
|
|
|
|
|
|
|
|
|
|
| |
Description: Multiple copies of Copyright appeared in Makefile.in. This was
due to automake copying the copyright right in the included files such as
config/commence.am.
Solution: Automake treats double hashes as comments and does not copy them
to Makefile.in. Changed all the copyright notices in config/*.am to use
double hashes for the Copyright right notice.
Tested: kagiso via bin/reconfigure.
|
|
|
|
|
|
|
|
| |
Dependency line
in the Makefile.
Makefile change only. Tested on kagiso, to be used to test on cobalt.
|
|
|
|
| |
Ran reconfigure to generate the Makefile.in files.
|
|
|
|
|
|
|
|
|
| |
copyright notice.
Tested platform:
Kagiso only since it is only a comment block change. If it works in one
machine, it should work in all, I hope. Still need to check the parallel
build on copper.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
It seems that while Cygwin supports the time command, it has trouble with
the syntax
srcdir="../../hdf5/test" time ./testhdf5
and complains.
The solution is to test the above case in configure and not to use the time
command if it fails; Cygwin is fine with
srcdir="../../hdf5/test" ./testhdf5
Tested on Cygwin and kagiso. This feature shouldn't be a major compatibility
problem since every platform but Cygwin is already fine with the current
syntax.
|
|
|
|
|
|
|
|
|
|
|
| |
The version of libtool used by HDF5 isn't directly affected by the reconfigure
script; instead, libtoolize --force must be used by hand. Libtool was the
source of the problem, so rolling its version back to 1.5.14 should solve the
issue (at least temporarily).
Reconfigure should still work on both heping and kagiso.
Tested on heping, kagiso, and tg-login3.
|
|
|
|
|
|
|
|
| |
Hopefully this will fix
issues on tg-login3.
bin/reconfigure should still work on both heping/mir and kagiso.
|
|
|
|
|
|
|
|
|
|
|
|
| |
Should disable linking against shared libraries in Fortran for compilers that
don't support shared libraries.
Should also fix problem when the wrong Fortran file extension was specified.
If these changes don't solve the Daily Test issues, I'll look at backing out
the autotool version change until I have time to fix them.
Tested on heping, kagiso, juniper.
|
|
|
|
|
|
|
|
| |
Linux machines.
Updated to the latest versions of autotools.
Tested on kagiso, heping, and juniper. Let me know if you have any problems.
|
|
|
|
|
|
|
|
|
|
| |
only tested
if it is enabled.
Added Direct VFD status to the configure summary.
Removed a line left over from pablo support. Oops!
|
|
|
|
|
|
|
|
|
|
|
|
| |
utility
and quote its arguments. Also checks for the 'socket' library on
Solaris.
If this patch passes the Daily Tests and makes the user happy, I'll
port it back to the 1.6 branch.
Tested on mir and sol.
|
|
|
|
|
|
|
| |
Re-run 'bin/reconfigure' script after recent checkins
Tested on:
none - shouldn't have any affect on compilation
|
|
|
|
|
|
|
|
| |
Description:
Add per-directory abbreviated copyright notices
(abbreviated COPYING files pointing to full notices).
Tested:
MANIFEST verified; not otherwise tested.
|
|
|
|
|
|
|
|
| |
Since these examples need to follow filesystem paths, the Makefiles need
to create directories in the examples directory; added this to the
Makefile.am.
Tested on Windows, mir, juniper
|
|
|
|
|
|
|
|
|
| |
VFD is being used
when a test is run.
Running reconfigure also regenerated error header files (because someone edited
them manually?).
|
|
|
|
|
|
|
|
|
|
| |
"make check-vfd" will now run all tests in the test directory with different
file drivers (at least, all of those tests that use the testing framework's
FAPL). Tests that fail will be skipped.
This is not a perfect fix, but is better than nothing.
Along with this change, check-vfd should be added to the Daily Tests.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Configuration feature
Description:
'make install' now tests both static and shared libraries if both are installed.
Solution:
Previously, shared libraries were only tested when static libraries were not installed.
Also cleaned up line in commence.am that was including HL library in all Makefiles.
Platforms tested:
mir (Makefile change only)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fix - bugzilla #552
Description:
On Cray X1, trying to use : as an argument confused the system.
Solution:
Added a test in configure to see if : as an argument is bad.
If so, skipped the test.
Platforms tested:
mir, Cray X1 (change to configure only)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fix.
Description:
The ${TR}, though avoid the error, is inconvenient. It is needed
because configure.in use the char range in the style of 'a-z'.
The other style of '[a-z]' is more commonly accepted by all tr
but autoconf tends to strip away [], making the syntax rather
clumsy.
Solution:
Learned from autoconf that it avoids the use of character range
by just spell all the letters out. Changed our tr commands to
use those variables defined by autoconf. Also removed the
definition of ${TR} since it will cause inconsistancy when
autoconf also use plain 'tr' in its generated code.
The Makefile.in are changed because the elimination of ${TR} from
configure triggered its removal from all Makefil.in. That is okay
because ${TR} is not used at all in Makefile.
Platforms tested:
h5committested. (sol failed to connected). also tested in shanti
using both /usr/ucb/tr and /bin/tr (the bad one before.)
Misc. update:
Updated both INSTALL and RELEASE files.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Code cleanup
Description:
Big clean up on high-level library code, including:
- Removing include of HDF5 private header file(!)
- Reduce number of compiler warnings
- Untangle header files, etc.
Platforms tested:
FreeBSD 4.11 (sleipnir) w/C++
Linux 2.4/64 (mir) w/C++ & FORTRAN
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Several bug fixes
Description:
Added config file for Cray X1 (previous file was misnamed)
Simplified some code in hyperslab.c test that seemed to have been
confusing compiler on Cray X1.
Fixed typo in config/commence.am
Cleaned up hl/src/Makefile.am
Solution:
All four fixes should be straightforward. The failure on Cray was
very difficult to debug, but involved arithmetic errors.
This change seems to fix it.
Platforms tested:
heping, copper, sol, some Cray X1 (more testing when system comes back up)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
new feature
Description:
1) separated the HL library into "public" and "private" header files, with the same caracteristics as the basic library
2) added the public headers to hdf5.h (with a conditional include macro, defined in configure.in)
3) added the path to HL in all Makefile.am 's , because of the inclusion in hdf5.h
Solution:
Platforms tested:
linux 32, 64
AIX
solaris
with fortran and c++
(one packet table example fails)
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fix
Description:
Previous checkin did a bad thing; 'make clean' failed in example directories.
Solution:
Fixed commence.am so that examples no longer break, and fixed a mistake
in conclude.am.
Platforms tested:
heping (minor makefile change)
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fix
Description:
make check-clean didn't clean results of example tests
Solution:
Fixed Makefiles so that check-clean recurses into example directories.
Also a little Makefile cleanup.
Platforms tested:
mir, modi4, heping, copper
|
|
|
|
|
|
|
| |
Moving gif2h5 from tools/ to hl/tools
Description:
Missed cvs adding hl/tools/Makefiles
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Moved gif2h5 tool to hl directory
Description:
Added a tools directory under the hl directory and moved the gif2h5 tool
to that directory.
Solution:
The gif2h5 tool was originally built in the tools directory, but this
introduced dependency issues that required special checks in the
Makefiles.am and required the top-level build order to be changed
because it depended on the HL library.
For simplicity in the Makefiles now and in the future, the gif2h5 tool
was moved to be underneath the hl library.
Platforms tested:
mir, copper, modi4, shanti
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Change to release script
Description:
Silenced doxygen's output when bin/release doc is run. Now if doxygen
has an error the release script will exit.
Someone forgot to run reconfigure after a Makefile.am, so testing the
release script seems to have had the side effect of regenerating a
Makefile.in.
Platforms tested:
mir
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
bug fix
Description:
the --disable-hl switch was causing linking errors on gif2h5 that uses image api (bugzilla #1)
Solution:
used the condional macro for hl to build gif2h5
Platforms tested:
linux
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
bug fix
Description:
the linking order in Makefile.am of the gif2h5 tool was causing linking errors on some configurations (pgcc, --disable-shared)
Solution:
changed the order of the linking (hl before hdf5)
Platforms tested:
linux, several configurations
solaris
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
some code cleaning
Description:
Solution:
Platforms tested:
none
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
bug fix , bugzilla bug #1
Description:
the gif2h5 was not writing HDF5 images correctly
Solution:
use the Image API to write the image, rewrote the writing functionY
Platforms tested:
linux
solaris
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Purpose:
Bug fix
Description:
Libraries were listed in the wrong order in tools/gifconv Makefile.am, confusing
the linker.
Solution:
Put HDF5 library after tools library in Makefile.am and ran reconfigure.
Platforms tested:
mir, sleipnir
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
h52gif bug fix (494)
Description:
the reading routines were using file datatype sizes for memory allocation
Changed the HDF5 read routines to use memory types and sizes,
for both the image and pallete datasets
Solution:
Platforms tested:
linux
solaris
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fix
Description:
Fortran type generation was broken in two ways. Fixed both.
Solution:
Firstly, there were a couple of path problems. Fixed a typo and
specified the full path of a file.
Secondly, the dependencies weren't right when building with HDF5-specific
commands (make lib, make check-s, etc.). Tweaked dependencies
to fix the problem.
Platforms tested:
mir, modi4, sleipnir
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Configure feature
Description:
Added 'make trace' target.
Solution:
Added tracing to 1.7. This was done automatically in 1.6, but left out
of 1.7 until now (oops!).
Tracing in 1.7 only happens manually, when the user types 'make trace.'
Tracing automatically requires more framework than it's worth.
I also fixed a couple of tracing bugs and ran trace.
Platforms tested:
mir, sleipnir, modi4
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fix
Description:
Before this checkin, 'gmake check-s' would fail if there was a file in
the current directory named 'check-s'.
This is fixed under gmake (not sure how to fix for other makes).
Solution:
check, progs, install, etc. are what gmake calls "phony" targets,
which means that no file should be created. These targets can be
specified by a line of the form
.PHONY: check progs install ...
Automake adds this line for targets it knows about, but HDF5 has a
lot of custom rules. This checkin adds a .PHONY line for those rules.
I believe that only gmake recognizes the .PHONY line (at least, pmake
doesn't seem to), but a partial solution is better than none.
This error should occur very rarely anyway (the user has to manually
create files with names like 'build-check-s' or '_test').
Platforms tested:
mir, sleipnir, modi4
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fix/feature
Description:
Added support for -shlib in h5fc and h5c++.
Made check-install use -shlib when only shared libraries have been installed.
Solution:
h5fc and h5c++ didn't recognize -shlib. Stole code from h5cc to link against
shared libraries.
When static libraries are disabled, the examples Makefiles will automatically
use the -shlib option to link against shared libraries. Thus,
--disable-static and make check-install should work together.
Platforms tested:
heping(disable-static, enable-static, fortran, c++), modi4 (disable-static, fortran, c++, parallel, enable-static)
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fix
Description:
Failed parallel tests now cause make to exit with an error.
Solution:
Edited config/conclude.am to throw an error if parallel test programs fail.
Platforms tested:
heping, modi4
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fix
Description:
Removed detection of pdb from configure.in as a corollary to removal
of pdb2hdf5 tool.
Platforms tested:
mir, modi4
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fix
Description:
Changed configure.in to use an environment variable TR to set the path
to the tr utility.
Solution:
There are two kind of tr on Solaris with slightly different syntax.
HDF5's configure relies on the "standard" tr. Traditionally, HDF5ers
have needed to make sure that the "right" tr was found before the
wrong one in their path; now they can use an environment variable.
Platforms tested:
mir, shanti, sol
Misc. update:
Forgot to update release notes. Off to do that now.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Makefile bug fix
Description:
Previously, automake didn't output rules to build perform/mpi-perf or
the test/gen_* programs.
Now these can be built by typing 'make mpi-perf' (or 'make foo') or by
configuring with --enable-build-all.
Solution:
Automake doesn't like having rules for programs it doesn't build. Tricked
it by having these programs built "sometimes"--whenever the user enables
--build-all. This should be used mostly for testing and to ensure that
these helper programs compile.
***IMPORTANT***
These programs do *not* currently compile. When --enable-build-all is used
(not the default), gen_new_fill fails because it uses an old API. This is
an existing "bug" that has simply been exposed by this checkin.
Platforms tested:
sleipnir, modi4, sol
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
bug fix.
Description:
When a parallel test script test fails, make would continue because the
way it was setup inside a for loop. Fixed it by issuing an exit 1 inside
the loop.
There was also a typo error in the newer command comparision that it
must be $${chkname} in order to be valid. Also, the test script itself
was not checked in the newer lists. All fixed.
Platforms tested:
h5committested and also hand tested in heping pp mode.
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fix
Description:
Massaged the newer script and config/conclude.am to make SX6 happy.
Platforms tested:
SX6, sol, mir
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
New feature.
Description:
Added the time command to the make check target to report time usage
of the execute of each test and test scripts. This gives us some idea
how long each test takes and some vague idea it is compute bound or
not.
powerpc-ibm-aix5.x:
Change $RUNPARALLEL default setting to allow it being invoked by the
time command.
Platforms tested:
h5committested.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Feature
Description:
Added H5_CFLAGS, etc. to 1.7 branch.
Now compilation flags can be put in H5_*FLAGS and they'll be used when
building hdf5 but not in h5cc.
Platforms tested:
mir, sleipnir, modi4
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fix
Description:
Disabled C++ shared libraries for Sun Workshop compiler.
Solution:
This bug only seems to happen when using the -xarch=v9 flag to compile in
64-bit mode, but disabling shared libraries entirely for this compiler is
an easier fix (I don't know how to detect 64 bit mode from the command line).
The framework for disabling shared libraries for other C++ compilers is
in place.
Platforms tested:
sol, mir, sleipnir, modi4
|