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* [svn-r26615] merged r26575 from the trunk into the branch.Scot Breitenfeld2015-03-276-48/+52
| | | | Tested: h5committest
* [svn-r26600] Fix CMake target calls to add new parameterAllen Byrne2015-03-2610-17/+17
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* [svn-r26582] Merge r26509 from trunkJerome Soumagne2015-03-2514-28/+0
| | | | Run reconfigure after merges from autotools_rework branch
* [svn-r26581] Merge r26526 from trunkJerome Soumagne2015-03-252-2/+2
| | | | | | Remove SETX variable from Makefile.am/Makefile.in Part of: HDFFV-9164
* [svn-r26576] Merged r26321,r26405,r26417 from the trunk into the branch.Scot Breitenfeld2015-03-2541-1274/+1247
| | | | Tested: h5committest
* [svn-r26531] Merge CMake packaging from trunk to 1.8Allen Byrne2015-03-231-0/+2
| | | | Tested: windows
* [svn-r26460] HDFFV-8520: Add api to control pluginsAllen Byrne2015-03-162-74/+74
| | | | h5committest
* [svn-r26398] Merges r26333 from trunkDana Robinson2015-03-095-102/+102
| | | | | | | | | | | | | | | | Eliminates gcc warnings due to -Wunsuffixed-float-constants. - Adds 'F' suffixes for most float constants. - A few constants MUST be of type double. These now receive the long double L suffix and are then cast to double. I do this via a new H5_DOUBLE() macro which was added to H5private.h. - Additionally, some 1.8-specific float suffixes were added. Fixes: HDFFV-9148 Tested on: h5committest
* [svn-r26395] Merges r26329 from trunkDana Robinson2015-03-0914-70/+0
| | | | | | | | | | | | | | Removed the configure option that allows selective disabling of individual internal filters (fletcher32, shuffle, etc.). This feature mucked up the code with a lot of #ifdefs, saved very little space and was not scalable to a general scheme for library size reduction. We've decided to remove the feature while we investigate a more general scheme for decreasing the library size. Fixes: HDFFV-9086 Tested on: h5committest
* [svn-r26394] Merges r26351 from trunkDana Robinson2015-03-092-0/+38
| | | | | | | | Adds warning prevention pragmas, etc. to flex- and bison-generated code. Fixes: HDFFV-9149 Tested on: h5committest
* [svn-r26371] Update cmake mininum versionAllen Byrne2015-03-0513-19/+15
| | | | Update windows wix cpack process.
* [svn-r26314] Brought autotools related changes from the trunk to the branch, ↵Scot Breitenfeld2015-02-2614-14/+28
| | | | r26188 r26280
* [svn-r26312] Merged r26294 from the trunk into the branch.Scot Breitenfeld2015-02-262-1/+32
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* [svn-r26307] merged r26172 from the trunk.Scot Breitenfeld2015-02-257-7/+1
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* [svn-r26304] bring 26303 from trunk:Mohamad Chaarawi2015-02-2514-33/+33
| | | | remove files with .clog2 extension generated by MPE when doing make clean
* [svn-r26224] merge 26180 from trunk:vms_last_support_1_8Mohamad Chaarawi2015-02-1814-14/+0
| | | | | | | | | | configure fixes for HDFFV-9068,9069,9096,9097,9135 from autotools_rework branch: - Remove Infering parallel compilers (C and Fortran) from configure.ac - Remove restriction to build shared with parallel - Cleanup parallel sections in configure.ac - remove large file support checks - MPE fixes.
* [svn-r26201] Merged r26170 from the trunk.Scot Breitenfeld2015-02-184-1/+146
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* [svn-r26064] HDFFV-9018: Install PDB files to bin folder with dlls.Allen Byrne2015-01-283-4/+4
| | | | Tested: windows
* [svn-r25705] Add LD path to HDF5 install directory to address HDFFV-8944.Larry Knox2014-10-143-0/+6
| | | | Tested with h5committest and failed external daily tests.
* [svn-r25673] Change version to 1.8.15-snap0.Albert Cheng2014-10-063-3/+3
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* [svn-r25669] Snapshot version 1.8 release 14 (snap18)HDF Tester2014-10-053-6/+6
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* [svn-r25643] merged change 23241 into the branch.Scot Breitenfeld2014-10-012-4/+4
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* [svn-r25642] merged changes 25614,25629,25631 into branch.Scot Breitenfeld2014-09-308-36/+459
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* [svn-r25523] Snapshot version 1.8 release 14 (snap10)HDF Tester2014-08-103-1778/+3302
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* [svn-r25497] Description:Quincey Koziol2014-07-3013-247/+231
| | | | | | | | | | Merge changes that correspond to the 64-bit ID changes (without the actual switch to 64-bit IDs) to the 1.8 release branch. (Plus a few minor cleanups and alignments with the trunk that aren't on the branch) Tested on: Mac OSX/64 10.9.4 (amazon) w/C++ & FORTRAN (h5committested on branch already for a week)
* [svn-r25402] Bring 25397/8 from trunk:Mohamad Chaarawi2014-07-1014-14/+0
| | | | | | | - remove configure checks for MPI_File_get_size and Big MPI_File_set_size as they are supported by MPIO implementations today. - fix bug in t_mpi.c (HDFFV-8856) tested with h5committest.
* [svn-r25400] bug fixes where a wrong type was used instead of hid_t.Mohamad Chaarawi2014-07-091-2/+2
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* [svn-r25222] Merge cmake_ext_mod into 1.8Allen Byrne2014-05-271-1/+1
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* [svn-r25209] Description:Quincey Koziol2014-05-211-1631/+1367
| | | | | | | | | | | | | | | | | | | Bring r25206 & r25207 from trunk to 1.8 branch: r25206: Add new warning flags for gcc 4.9.x r25207: Merge changes from Coverity branch to trunk: r20907: Original issue was #338. Refactored code to clean up allocations consistantly, completely, check all returns, assign initialization values and handle errors. Tested on: MacOSX/64 10.9.3 (amazon) w/C++, FORTRAN & parallel (h5committested on trunk)
* [svn-r25198] Description:Quincey Koziol2014-05-181-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r25197 from trunk to 1.8 branch: Bring changes from hdf5_1_8_coverity branch back to trunk: r20878: Issue 76: Check if H5Tget_nmembers(type) fails and simply return(FALSE). Also move printf to after check. r20880: Issue 192: Create ret_val var set to -1. Add out label for failures to jump to, return ret_val at bottom. r20882: Fixes for coverity: 1) bug #1679: remove dead code in test/mf.c 2) bug #1680: remove dead code in tools/lib/h5diff_dset.c r20883: Fix coverity issue 585 Description: Changed variable "c" in processStrData in h5import.c to an int, to match fgetc return value, and removed call to feof, instead checking if c == EOF. Tested on: MacOSX/64 10.9.3 (amazon) w/C++, FORTRAN & parallel (too minor to require h5committest)
* [svn-r25106] Removed LT_ADD_LIBHDF5_DEPENDENCY configure conditional to roll ↵Larry Knox2014-04-2517-41/+12
| | | | | | | | back fix for removing rpaths from lib files. The fix also removed dependencies on libhdf5, etc. when the --disable-sharedlib-rpath configure option was invoked. Added instead configure variable hardcode_into_lib=no. This removes rpath from lib files on Linux and solaris machines. Tested with h5committest on jam, koala, ostrich and platypus (cmake), and on emu and kite.
* [svn-r25074] HDFFV-8709: Add changes for HDFFV-8676, -8677, -8678Allen Byrne2014-04-224-94/+101
| | | | Tested: local linux
* [svn-r25068] Fix for HDFFV-8276, the --disable-sharedlib-rpath configure ↵Larry Knox2014-04-186-12/+27
| | | | | | | | | | | | | optino doesn't remove rpaths from th e library files, was checked into trunk in September 2013, but not into the 1.8 branch. part of the code was merged to v1.8 in the interim for fortran, but not for hl or c++. The rest is mer ged in this revision. The --disable-sharedlib-rpath option seems to have no effect on non-Linux platforms. Tested with h5committest on jam, koala, ostrich and platypus. Tested with --disble-sharedlib-rpath option on jam, platypus, emu and quail. Absence of rpaths verified on jam and platypus.
* [svn-r25036] Maintenance before creating 1_8_13 branch: changed version ↵Elena Pourmal2014-04-143-3/+3
| | | | number to 1.8.14-snap0
* [svn-r25017] Merge r24997 changes from trunk.Larry Knox2014-04-116-25/+52
| | | | | | | | | | | | | Added compiler versions for mpich to settings file and configure summary. For make installcheck, compile and run installed examples using the installed scripts. They were being compiled but not run. Add Fortran2003 examples to the run-ex-fortran script when fortran2003 is enabled. Set flag to -O3 in production mode for Intel compilers other than those with specified other settings. Gentoo patches: Remove unnecessary setting of LD_LIBRARY_PATH from configure. Prevent potential array subscript out of bounds error in perform/pio_engine.c and sio_engine.c. Tested with h5committest on jam, koala, ostrich and platypus.
* [svn-r25014] Purpose:Dana Robinson2014-04-113-25/+25
| | | | | | | | | | | | | | | | | Merge of r24937 from the trunk Adds H5free_memory to the API. This function should be used to free memory allocated by the library (e.g., returned values from H5Tget_tag, H5Pget_class_name, etc.). This is mainly to help Windows applications deal with multiple CRT instances, but can also be helpful when a debug memory manager is being used or when the HDF5 API is being wrapped for managed languages like Python and Java. Tested on: 32-bit LE linux (jam) with fortran and C++ 64-bit BE linux (ostrich) 64-bit LE linux (koala)
* [svn-r24990] Problem:Albert Cheng2014-04-091-1/+1
| | | | | | | | | | | | | AIX compiler complains that: ex_ds1.f90, line 89.16: 1512-050 (W) Field separator is missing, in literal FMT specifier, after edit descriptor X. A comma is assumed. Line 89: WRITE(*,'(/,5X 3(A,1X),I0,A,L1)') 'Is',TRIM(DS_1_NAME),& Solution: Added the missing comma after "5X". Tested: AIX system.
* [svn-r24980] HDFFV-8290: Merge automake 1.14.1 changes from trunkAllen Byrne2014-04-0726-952/+6188
| | | | Tested: h5committest
* [svn-r24906] Merge latest CMake changes from trunk.Allen Byrne2014-03-2620-249/+265
| | | | Tested: local linux
* [svn-r24894] Description:Quincey Koziol2014-03-255-18/+13
| | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r24869 & r24875 from trunk to 1.8 branch: Clean up more compiler warnings, plus merge a few Coverity bug fixes from the hdf5_1_8_coverity branch back to the trunk: r20877: Purpose: Fix coverity issue 1723 Description: Modified test_generate in hl/test_image to close file "f" before exit, even if an error occurs. r20879: Issue 63: change check of return of H5Tget_nmembers to <=0. No need to go futher if call fails as well as empty. r20881: Coverity #659 in Run 46: I changed the Line 442 where it tries to check whether FLAG_PRINTED is TRUE. But it had just been set to FALSE. I took out the condition check in the print statement. Tested on: Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & Parallel (daily tested on trunk)
* [svn-r24878] Description:Quincey Koziol2014-03-2414-14/+0
| | | | | | | | | | | | | | | | | | | | | Bring r24864 from trunk to 1.8 branch: Remove all traces of MPI-POSIX VFD and GPFS detection/code. Remove remaining traces of stream VFD. Remove testpar/t_posix_compliant test (it's not actually verifying anything). Clean up H5D__mpio_opt_possible() further. Moved environment variable that disables MPI collective operations into MPI-IO VFD (instead of it being in src/H5S.c). A few other small code cleanups. Tested on: Mac OSX/64 10.9.2 (amazon) w/parallel & serial (daily tested on trunk)
* [svn-r24810] Description:Quincey Koziol2014-03-174-83/+14
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r24803 & r24804 from trunk to 1.8 branch: r24804: Brought changes from Coverity branch back to trunk, and cleaned up misc. other warnings & formatting issues: r20833: Fixed Coverity 667 and 668 with real integer overflow tests this time. r20834: Use HDstrncpy and HDstrncat. --gh r20835: Change to use strncpy - use base_len + 1 for line 156, use HDstrlen(path) + 1 for line 159 r20836: Fixed coverity 585 by casting output of fgetc() to a char. r20837: Changed sprintf calls to snprintf with size 1 less than the allocated buffer to address coverity issue #967. r24803: Rename GCC_DIAG_OFF/ON macros to H5_GCC_DIAG_OFF/ON and move from src/H5private.h to src/H5public.h. Wrap typedef of hsize_t and hssize_t in DIAG_OFF(long-long) macros. Clean up a bunch of "macro '-' is unused" warnings. Tested on: Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & parallel (too minor to require h5committest)
* [svn-r24785] Description:Quincey Koziol2014-03-122-117/+42
| | | | | | | | | | | | | Bring r24769 & r24772 from trunk to 1.8 branch: Check in Mohamad's changes to support collective I/O on point selections, along with some other minor cleanups. Correct some dynamically sized arrays that fail on Windows. Tested on: Mac OSX/64 10.9.2 (amazon) w/parallel (And has been through the daily test regime on the trunk)
* [svn-r24732] Fix for reconfigure, which fails because ↵Larry Knox2014-02-2214-0/+14
| | | | | | LT_ADD_LIBHDF5_DEPENDENCY is used in Makefiles but the declaration in configure.ac is missing. Copied declaration from trunk. Tested with h5committest on jam ostrich koala and platypus(cmake).
* [svn-r24728] Description:Quincey Koziol2014-02-211-5/+12
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r24726 & r24727 from trunk to 1.8 branch: Description: Revert some earlier usage of strncpy, which was incorrect. Bring Coverity changes from branch back to trunk: r20821: Use HDstrncpy. --gh (Fixed already, with strdup) r20822: (Not merged, incorrect use of HDstrncpy()) r20823: (Not merged, incorrect use of HDstrncpy()) r20824: Maintenance: Bug fix: addressed CID 666. Value stored at *expression_len should be used in the call to HD5packFstring to avoid overflow (and unnecessary arithmetic calculation and casting) r20825: Issue 642: Added check for error and handler with print to stderr and exit. r20826: Undo revision 20818, as that issue has already been fixed in the 1.8 branch and trunk (but not coverity branch) r20827: (Not merged, incorrect use of HDstrncpy()) r20828: Use HDstrncpy. --gh (Corrected use of strncpy()) r20829: Check return of H5Lget_val(print_udata->fid, path, targbuf, linfo->u.val_size + 1, H5P_DEFAULT) and if error set trgbuf[0] to 0. Check if H5Lunpack_elink_val(targbuf, linfo->u.val_size, NULL, &filename, &objname) was successful and allow print. Otherwise filename and objname are not created. (init those to NULL) r20830: resolved coverity issues 939, 940, 941, 944, and 947. all were complaints about use of sprintf, and in all cases, the buffers used were large enough for all eventualities. Resolved issue by replacing calls to sprintf with calls to snprintf. r20831: Maintenance: Addressed CID 852 Replaced sprintf with snprintf r20832: Purpose: Fix valgrind issues with hl/examples/ex_image2 Description: Modified hl/examples/ex_image2 to free global "gbuf" before exit. Tested on: Mac OSX/64 10.9.1 (amaon) w/C++, FORTRAN & Threadsafety (too minor to require h5committest)
* [svn-r24684] Add IF SHARED block around Windows PDB file generation command.Allen Byrne2014-02-043-7/+10
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* [svn-r24393] Cleanup testfiles from scripts. Update lists of files to be ↵Allen Byrne2013-11-015-4/+48
| | | | | | cleaned. CMake update to clean testfiles. Tested: local cmake, autotools
* [svn-r24259] Maintenance: Updated version number to 1.8.13-snap0; cleaned up ↵Elena Pourmal2013-10-073-3/+3
| | | | | | RELEASE.txt for new info. The 1.8 branch is open now for code changes.
* [svn-r24072] Merge trunk cmake changes to 1.8 branch. Allen Byrne2013-08-2614-153/+245
| | | | | | | Also add default switch blocks to h5import. Merge h5dump any_path option from trunk. Tested: local linux
* [svn-r24032] Description:Quincey Koziol2013-08-201-1/+1
| | | | | | | | | | Bring r24030 from trunk to 1.8 branch: Clean up more compiler warnings. Tested on: Mac OSX/64 10.8.4 (amazon) w/gcc, C++ & FORTRAN (too minor to require h5committest)
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