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* [svn-r21183] Description: unset the executable permissions for source files:Scot Breitenfeld2011-08-072-0/+0
| | | | | | tstimage.f90 and tsttable.f90. Tested: none.
* [svn-r21182] Desciption: brought revision 21157 from the trunk to the ↵Scot Breitenfeld2011-08-072-13/+25
| | | | | | | | branch. Fixes hl bug HDFFV-7673 -- DS library segfaults when retrieveing length of the dimension label that was not set Tested: jam (gnu 4.5 compiler)
* [svn-r21081] Remove redundant EXPORTS symbol since CMake automatically ↵Allen Byrne2011-07-081-1/+0
| | | | creates it.
* [svn-r21044] Purpose:Mike McGreevy2011-06-2814-14/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Fix HDFFV-7592 "Remove PACKEDBITS option from autotools files" Description: The code for h5dump's packed bits feature was conditionally compiled in via this option during its 'beta' release in 1.8.5. Now that the feature is fully supported, h5dump has since been changed to always compile the packed bits code (having removed the #ifdef H5_HAVE_H5DUMP_PACKED_BITS checks), so this option in configure is no longer needed. This commit removes the --enable-h5dump-packed-bits configure option, including the help summary from './configure --help' and the libhdf5.settings output summary, the PACKED_BITS Makefile variable, and the definition of H5_HAVE_H5DUMP_PACKED_BITS define in appropriate pubconf header files (which has already been removed from use in source code as of r20722). Note that this option was never added to the trunk, thus this commit only need occur on the 1.8 branch. Tested: - Configure output, help, & summary verified on jam - h5committested
* [svn-r21002] Description:Scot Breitenfeld2011-06-2010-168/+1509
| | | | | | Brought r20958-20960 for DS fortran APIs from trunk. Tested: jam (intel)
* [svn-r20998] Add lite2 dependency on lite1 exampleAllen Byrne2011-06-191-0/+4
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* [svn-r20969] Initialized errcode and type_sizeout to 0 and removed ';' in ↵Scot Breitenfeld2011-06-131-6/+5
| | | | | | Fortran source lines. Tested: jam (intel)
* [svn-r20957] Description: brought rev. 20937 from trunk, additional test for ↵Scot Breitenfeld2011-06-101-1/+76
| | | | | | attaching and detaching DS. Teste: jam (intel)
* [svn-r20938] Description: Reverted to revision 20904 to bring the file back in Scot Breitenfeld2011-06-071-4/+2
| | | | | line with the trunk which had a later revision of the same section of code.
* [svn-r20931] Purpose: brought revisions 20870 and 20923 from the trunkScot Breitenfeld2011-06-052-5/+172
| | | | | | to fix bug HDFFV-7605 Tested: jam (intel compiler)
* [svn-r20904] Bring r20871, 20875, 20901, 20903 from trunk.Allen Byrne2011-05-251-4/+2
| | | | Tested: local linux
* [svn-r20719] Merge changes to scripts to run installed examples from hdf5 ↵Larry Knox2011-05-043-6/+6
| | | | 1.8.7 r 20718. The default prefix in the scripts will use the compile scripts in the installed bin directory.
* [svn-r20574] Bump soname interface number. This should have been bumpedMike McGreevy2011-04-203-6/+6
| | | | | | in 1.8.6 when its API was changed, but since it wasn't I'm manually fixing up these numbers in 1.8 and 1.8.7 branches for the time being.
* [svn-r20565] Update 1.8 branch version to 1.8.8-snap0Mike McGreevy2011-04-203-3/+3
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* [svn-r20541] Add missing prototypes for windowsAllen Byrne2011-04-181-7/+57
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* [svn-r20534] Remove export from "export LD_LIBRARY_PATH=${LL_PATH}" in ↵Larry Knox2011-04-162-3/+2
| | | | | | examples and hl/examples Makefiles. "export" breaks make install in Daily Tests on FreeBSD machines and isn't missed elsewhere. Tested on amani, freedom, jam, koala, and loyalty.
* [svn-r20530] Updated configure.in to check for a non-empty LL_PATH in ↵Larry Knox2011-04-152-2/+2
| | | | | | addition to using szip before attempting to export LL_PATH as LD_LIBRARY_PATH in the examples and hl/examples Makefiles. This fixes a probelm that caused make install or installcheck on FreeBSD machines. Tested on freedom and jam.
* [svn-r20525] Description:Mike McGreevy2011-04-1517-128/+421
| | | | | | | | Merge revisions 20475, 20502, and 20504 from trunk to 1.8 branch. Tested: Tested on jam, fred, bangan (CYGWIN), and h5committested.
* [svn-r20508] Checked in changes for fixing:Scot Breitenfeld2011-04-157-5186/+9572
| | | | | | | | | | | | | | | | | | | | | | Bug 1752 - H5Lite Fortran APIs do not allow you to create 4 dimensional datasets (or greater) * Fixed and tested the integer, real, double routines for creating and reading dimensional dataset with ranks 4-7 Bug 1939 - h5tbget_field_info_f * Fixed error in passing an array of characters with different length field names for h5tbmake_table. * Fixed error in h5tget_field_info_f with packing the C strings into a fortran array of strings. * Added optional arguement to h5tbget_field_info_f called maxlen which returns the maximum string character length in a field name element. * Uncommented out test for h5tbget_field_info_f in the test program and added additional checks for the output. Tested: jam (intel, gnu compilers)
* [svn-r20479] Fixed issue HDFFV-5866 (BZ 2156). Changed scripts to run ↵Larry Knox2011-04-123-12/+35
| | | | | | examples to use specific names for compiled executable files instead of a.out, which did not work on Cywin as it produces a.exe by default. Removed issue from known problems section of RELEASE.txt. Tested with h5committest and Cygwin 1.7.8 on Windows 7.
* [svn-r20169] Correct name of tool from hdf2gif to h52gif.Allen Byrne2011-03-011-4/+4
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* [svn-r20157] Bring CMake changes to branch up to r20156 from trunkAllen Byrne2011-02-257-15/+13
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* [svn-r20143] Correct misplaced bracketAllen Byrne2011-02-221-2/+2
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* [svn-r20137] Correct hl/fortran/src INCLUDE_DIRECTORIES.Allen Byrne2011-02-222-2/+3
| | | | Add new efc files and projects to windows
* [svn-r20128] Add fortran mod folder to INCLUDE_DIRS for gfortran 4.2.x.Allen Byrne2011-02-211-1/+1
| | | | | | Add test dependicies to correct the order of tests - cmake 2.8.4 bug - but also will improve cmake parallel testing. Tested: local linux, jam
* [svn-r20084] Add missing library referenceAllen Byrne2011-02-111-1/+1
| | | | Tested: windows
* [svn-r20082] DLL visibility names needed to be updated in cstub in windows ↵Allen Byrne2011-02-111-96/+96
| | | | | | using cmake Tested: windows
* [svn-r20080] Remove obsolete lines (commented) after correcting Fortran ↵Allen Byrne2011-02-101-6/+0
| | | | | | handling in CMake files Tested: local: linux
* [svn-r20079] Correct Fortran handling in CMake filesAllen Byrne2011-02-105-65/+26
| | | | Tested: local: linux
* [svn-r20062] Description:Quincey Koziol2011-02-081-164/+102
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r20061 from trunk to 1.8 branch: Bring changes from Coverity branch to trunk: r19930: Fix memory leaks involving VL attributes in h5repack and h5diff. The buffers in copy_attr and diff_attr were not checked for the presence of a vlen before being freed, and vlen storage was never reclaimed. Added checks and calls to H5D_vlen_reclaim(). r19933: Purpose: Fix memory leak in H5L_move_cb() Description: H5L_move_cb copied the source link using H5O_msg_copy() but freed it manually using H5MM_xfree(). Since H5O_link_copy allocates the link using H5FL_MALLOC, this causes the link to be allocated from the free list but is never put back on the free list when it is freed. This prevents the link free list from shutting down properly. Modified H5L_move_cb() and H5L_move_dest_cb() to free the link properly using H5O_msg_free(). r19973: Fix resource leaks by freeing string created by HD5f2string r19974: Issue #345: Inialize buf variable to null Tested on: Mac OS X/32 10.6.6 (amazon) w/debug & production (h5committested on Coverity branch)
* [svn-r19913] Correct format of empty parameterAllen Byrne2011-01-051-1/+1
| | | | Tested: local linux
* [svn-r19911] Change how LINK_FLAGS for fortran are appended on Windows - ↵Allen Byrne2011-01-051-1/+5
| | | | | | correct for just shared libs bring r19910 from trunk
* [svn-r19908] Change how LINK_FLAGS for fortran are appended on WindowsAllen Byrne2011-01-053-11/+5
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* [svn-r19906] Windows: Correct how fortran links in CRT library. Also correct ↵Allen Byrne2011-01-048-18/+18
| | | | | | macro use for checking libtype. Tested: Windows
* [svn-r19898] Remove use of /MT compile flag for building static libs and ↵Allen Byrne2010-12-306-9/+2
| | | | programs. Added BUILT_AS_STATIC_LIBRARY define to set the windows import/export defines correctly for static libraries.
* [svn-r19871] Add tests for examples.Allen Byrne2010-12-033-23/+60
| | | | | | Bring r19870 from trunk Tested: local linux
* [svn-r19862] Updated libtool to version 2.4, autoconf to version 2.68, and ↵Larry Knox2010-12-0114-0/+42
| | | | | | m4 to version 1.4.15. Tested with h5committest on amani, jam and heiwa.
* [svn-r19655] Description:Quincey Koziol2010-10-212-133/+94
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r19654 from trunk to 1.8 branch: Bring Coverity revisions from branch back to trunk, and clean up some other misc. compiler warnings also. r19500: Fix coverity items 1446 and 1447. Moved up calls to memset in test_cont in ohdr.c so the test never tries to close uninitialized locations. r19501: Fix coverity items 1398-1445. Various uninitialized variable errors in fheap.c. r19502: Fixed coverity issue 579 and some additional warnings in the file as well. r19503: Bug fix: This fix addressed the "RESOURCE_LEAK" problems #789 and 790, run 26 r19504: minor mods to try to keep coverity from flagging false positives. r19505: Fixed coverity issues 566 - 571. Declared variables that are passed to functions that use them as arrays to be arrays of size 1. Tested on: Mac OS X/32 10.6.4 (amazon) w/debug, production & parallel (h5committested on coverity branch)
* [svn-r19529] Added line to config/examples.am to remove execute permission ↵Larry Knox2010-10-063-0/+3
| | | | | | from example source files that are installed in .../share/hdf5_examples/. This will address bugzilla #2025. Tested with h5committest on amani, heiwa, and jam.
* [svn-r19528] Add clear generated objects commands to test blocks.Allen Byrne2010-10-062-0/+41
| | | | | | | | Add configurefile command to copy CTestCustom to build folder. Bring r19527 back from trunk Tested: local linux
* [svn-r19510] Improve CMake support for CYGWIN.Allen Byrne2010-10-041-4/+4
| | | | | | | | Correct script comment in testh5diff.sh Bring r19509 back from trunk Tested: Windows Cygwin
* [svn-r19451] Update version of 1.8 branch to HDF5 1.8.7-snap0Mike McGreevy2010-09-213-3/+3
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* [svn-r19438] Correct use of lib, include, bin in INSTALL commands to use ↵Allen Byrne2010-09-204-12/+25
| | | | | | proper variables. Tested: local linux
* [svn-r19408] In this revision the '/' after ${DESTDIR} wherever it occursLarry Knox2010-09-1621-86/+238
| | | | | | | | | | | | | | | | | | | | has been removed. According to the official description of DESTDIR by Gnu at http://www.gnu.org/prep/standards/html_node/DESTDIR.html, DESTDIR is prepended to the normal and complete install path that it precedes for the purpose of installing in a temporary directory which is useful for building rpms and other packages. The '/' after ${DESTDIR} will be followed by another '/' at the beginning of the normal install path. When DESTDIR is empty the path then begins with '//', which is incorrect and causes problems at least for Cygwin. The change made in config/commence.am affects many Makefile.*s when bin/reconfigure is run. EXAMPLEDIRs had to be corrected individually. Also the scripts to run examples after they are installed have checks added to see that the fortran and c++ directories are present before trying to run the scripts in them. Tested with h5committest on amani, heiwa and jam.
* [svn-r19371] Updated autoconf to version 2.6.7, libtool to version 2.2.10, ↵Larry Knox2010-09-1014-14/+14
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | and m4 to version 1.4.14. Also added m4 directory for m4 macros according to autoconf suggestion. Tested with h5committest on amani, jam, and heiwa, and on linew. -This line, and those below, will be ignored-- M hdf5_1_8/test/Makefile.in A hdf5_1_8/m4 AM hdf5_1_8/m4/ltsugar.m4 AM hdf5_1_8/m4/libtool.m4 AM hdf5_1_8/m4/ltversion.m4 AM hdf5_1_8/m4/lt~obsolete.m4 AM hdf5_1_8/m4/ltoptions.m4 M hdf5_1_8/configure M hdf5_1_8/Makefile.in M hdf5_1_8/testpar/Makefile.in M hdf5_1_8/configure.in M hdf5_1_8/src/Makefile.in M hdf5_1_8/tools/Makefile.in M hdf5_1_8/tools/misc/Makefile.in M hdf5_1_8/tools/h5dump/Makefile.in M hdf5_1_8/tools/h5repack/Makefile.in M hdf5_1_8/tools/h5jam/Makefile.in M hdf5_1_8/tools/h5diff/Makefile.in M hdf5_1_8/tools/lib/Makefile.in M hdf5_1_8/tools/h5copy/Makefile.in M hdf5_1_8/tools/h5import/Makefile.in M hdf5_1_8/tools/h5stat/Makefile.in M hdf5_1_8/tools/h5ls/Makefile.in M hdf5_1_8/hl/test/Makefile.in M hdf5_1_8/hl/tools/Makefile.in M hdf5_1_8/hl/tools/gif2h5/Makefile.in M hdf5_1_8/hl/Makefile.in M hdf5_1_8/hl/src/Makefile.in M hdf5_1_8/hl/c++/test/Makefile.in M hdf5_1_8/hl/c++/Makefile.in M hdf5_1_8/hl/c++/src/Makefile.in M hdf5_1_8/hl/c++/examples/Makefile.in M hdf5_1_8/hl/fortran/test/Makefile.in M hdf5_1_8/hl/fortran/Makefile.in M hdf5_1_8/hl/fortran/src/Makefile.in M hdf5_1_8/hl/fortran/examples/Makefile.in M hdf5_1_8/hl/examples/Makefile.in M hdf5_1_8/config/commence.am M hdf5_1_8/MANIFEST M hdf5_1_8/c++/test/Makefile.in M hdf5_1_8/c++/Makefile.in M hdf5_1_8/c++/src/Makefile.in M hdf5_1_8/c++/examples/Makefile.in M hdf5_1_8/bin/ltmain.sh M hdf5_1_8/bin/reconfigure M hdf5_1_8/perform/Makefile.in M hdf5_1_8/fortran/test/Makefile.in M hdf5_1_8/fortran/testpar/Makefile.in M hdf5_1_8/fortran/Makefile.in M hdf5_1_8/fortran/src/Makefile.in M hdf5_1_8/fortran/examples/Makefile.in M hdf5_1_8/aclocal.m4 M hdf5_1_8/examples/Makefile.in
* [svn-r19362] Move Windows specific compile and link flags to macrosAllen Byrne2010-09-097-152/+13
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* [svn-r19341] Added cmake tests for c++ examplesAllen Byrne2010-09-021-0/+5
| | | | Tetsed: local linux
* [svn-r19337] Change #ifndef _WIN32 to #ifdef H5_HAVE_UNISTD_HAllen Byrne2010-09-011-3/+3
| | | | Tested: windows, heiwa and local linux
* [svn-r19326] Added parallel build commands.Allen Byrne2010-08-3110-25/+27
| | | | | | | | Corrected use/name of source folder aliases. Duplicated FindMPI.cmake so that non-c++ compiler is found first (recommemded commands did not work). Bring r19325 from trunk Tested: local linux with mpich
* [svn-r19238] Description:Quincey Koziol2010-08-123-3/+3
| | | | | | | | | | | | Bring r19237 from trunk to 1.8 branch: Clean up misc. compiler warnings. Tested on: FreeBSD/32 6.3 (duty) in debug mode Mac OS X/32 10.6.4 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode Mac OS X/32 10.6.4 (amazon) w/parallel, in debug mode
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