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* 1.8 Merge #2175 Implement option for using CMake GNUInstallDirs (#2224)Allen Byrne2022-11-083-7/+7
| | | | | * Merge #2175 Implement option for using CMake GNUInstallDirs * 1.8 only revert mod dir because of windows
* Run bin/reconfigure to propagate fortran mod change to configure and (#1952)Larry Knox2022-07-2914-4/+19
| | | Makefile.in files.
* 1.8 fortran module folder from GH#1411 #1922 (#1944)Allen Byrne2022-07-282-9/+10
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* clang 13 format #1933 (#1941)Allen Byrne2022-07-2831-234/+234
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* 1.8 Merge doxygen changes from develop (#1545)Allen Byrne2022-03-311-1/+1
| | | | | | | * Merge doxygen changes from develop * revert macro code change * Format correction
* Add missing files for enabling doxygen and run bin/reconfigure. (#1246)Larry Knox2021-12-0214-28/+686
| | | | | | * Add missing files for enabling doxygen and run bin/reconfigure. * Make default to build high-level tools the same as default for high-level library.
* Merge Fixed HL_test_packet, incorrect length assignment (#1103)Allen Byrne2021-10-271-2/+2
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* 1.8 Merge Remove clang warnings from develop (#1099)Allen Byrne2021-10-197-71/+74
| | | | | * Merge Remove clang warnings from develop * revert HD prefix
* 1.8 Merge HDFFV-11266 - add option to build HL tools #1018 (#1022)Allen Byrne2021-09-1717-8/+34
| | | | | | | * Merge HDFFV-11266 - add option to build HL tools #1018 * Update configure and Makefile.ins with bin/reconfigure. Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
* 1 8 update copyright headers (#1004)Larry Knox2021-09-166-6/+6
| | | | | | | | | | | | | | | * Update copyright headers with reproduction notice in 5 files (#993) * Update copyright headers with reproduction notice in 5 files that did not match terms in COPYING file . * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Commit changes to Makefile.ins and 4 src/H5E*.h files from running bin/reconfigure. Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Hdf5 1 8 merges from develop and format specifier updates (#670)Allen Byrne2021-05-253-9/+21
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Update supported platforms * Merge PR#3 changes from develop * # WARNING: head commit changed in the meantime Merge gcc 10 diagnostics option from develop Merge CMake changes from develop Merge warnings from develop Merge #318 OSX changes from develop Merge tools changes from develop Merge test macros from develop * Format updates * Fix missing semicolon and format fix * Format update * Correct actions, remove java option * Update autotools build files * Add testfiles * Fix configure issue with make flags * Init fapls to default * Update generated files and fix h5repack id closure * update format * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup whitespace cleanup tools sync * format alignment * initialize vars * revert H5private change * Merge #380 from develop * Split format source and commit changes on repo push * Change windows TS to use older VS. * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update unsupported types with precision * Add "option" command for clang options * CMake merges from develop h5cc scripts * Updates from develop and printf formatters * Committing clang-format changes * Issue #669 remove version from pkgcfg filename * remove version from h5cc script Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* 18 copying update (#565)Larry Knox2021-04-226-78/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * close #195. (#196) * Update HDF5PluginMacros.cmake * Update HDF5PluginMacros.cmake * Restores maintainer mode in the autotools (#200) Maintainer mode should be enabled in development branches. Also adds helpful commenting. Add script bin/switch_maint_mode. Add file changes generated by bin reconfigure in src/H5Edefin.h src/H5Einit.h src/H5Epubgen.h src/H5Eterm.h * Update MANIFEST for switch_maint_mode. * Update so numbers to match 1.8.22 release. * Updated configure with reconfigure. * Updates and corrections following HDF5 1.8.22 release. * Commit Makefile.ins with so version numbers updated by bin/reconfigure. * Fix undefined left shifting of negative numbers (#338) Undefined Bahavior Sanitizer errored here about left shifting negative numbers. * Update top-level COPYING file and remove COPYING files from subdirectories. * Update top-level COPYING file and remove COPYING files from subdirectories (#561) * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING (license) file. * Add release_docs/code-conventions.md file. * Add script to test h5py. * Fix script error. * Add file h5pytest.yml. * Test declaration of counter variables in for loops. * Committing clang-format changes * Committing clang-format changes * Added [] to line 126 of H5LTanalyze.l. Ran bin/genparser with flex v2.6.4 and Bison v3.0.4 on jelly. * Revert "Added [] to line 126 of H5LTanalyze.l." This reverts commit e4a9cee441efa75b16a8ee030c86189e186dd266. * Revert extra commits to match canonical develop. * Update top-level COPYING file and remove COPYING files from subdirectories. * Remove subdirectory COPYING files from MANIFEST. Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Remove non-existant file from MANIFEST. Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> Co-authored-by: Sean McBride <sean@rogue-research.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* 1 8 Merge dev changes for long double and cmake (#548)Allen Byrne2021-04-2010-18/+69
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Update supported platforms * Merge PR#3 changes from develop * # WARNING: head commit changed in the meantime Merge gcc 10 diagnostics option from develop Merge CMake changes from develop Merge warnings from develop Merge #318 OSX changes from develop Merge tools changes from develop Merge test macros from develop * Format updates * Fix missing semicolon and format fix * Format update * Correct actions, remove java option * Update autotools build files * Add testfiles * Fix configure issue with make flags * Init fapls to default * Update generated files and fix h5repack id closure * update format * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup whitespace cleanup tools sync * format alignment * initialize vars * revert H5private change * Merge #380 from develop * Split format source and commit changes on repo push * Change windows TS to use older VS. * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update unsupported types with precision Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* 1 8 Merges from develop (#418)Allen Byrne2021-03-0318-51/+52
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Update supported platforms * Merge PR#3 changes from develop * # WARNING: head commit changed in the meantime Merge gcc 10 diagnostics option from develop Merge CMake changes from develop Merge warnings from develop Merge #318 OSX changes from develop Merge tools changes from develop Merge test macros from develop * Format updates * Fix missing semicolon and format fix * Format update * Correct actions, remove java option * Update autotools build files * Add testfiles * Fix configure issue with make flags * Init fapls to default * Update generated files and fix h5repack id closure * update format * Merges from develop #358 patches from vtk #361 fix header guard spelling
* HDF5 1 8 merge of recent changes and tools (#353)Allen Byrne2021-02-2227-280/+260
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Update supported platforms * Merge PR#3 changes from develop * # WARNING: head commit changed in the meantime Merge gcc 10 diagnostics option from develop Merge CMake changes from develop Merge warnings from develop Merge #318 OSX changes from develop Merge tools changes from develop Merge test macros from develop * Format updates * Fix missing semicolon and format fix * Format update * Correct actions, remove java option * Update autotools build files * Add testfiles * Fix configure issue with make flags * Init fapls to default * Update generated files and fix h5repack id closure * update format
* Hdf5 1 8 (#328)Larry Knox2021-02-094-19/+42
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * close #195. (#196) * Update HDF5PluginMacros.cmake * Update HDF5PluginMacros.cmake * Restores maintainer mode in the autotools (#200) Maintainer mode should be enabled in development branches. Also adds helpful commenting. Add script bin/switch_maint_mode. Add file changes generated by bin reconfigure in src/H5Edefin.h src/H5Einit.h src/H5Epubgen.h src/H5Eterm.h * Update MANIFEST for switch_maint_mode. * Update so numbers to match 1.8.22 release. * Updated configure with reconfigure. * Updates and corrections following HDF5 1.8.22 release. * Commit Makefile.ins with so version numbers updated by bin/reconfigure. Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
* 1 8 changes for sanitize=address (#315)Allen Byrne2021-02-052-2/+2
| | | | | * Update supported platforms * Merge PR#3 changes from develop
* Update pkgconfig settings with version - #218 (#223)Allen Byrne2020-12-223-6/+6
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* Update SO numbers in Hdf5 1 8 (#216)Larry Knox2020-12-213-27/+27
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * close #195. (#196) * Update HDF5PluginMacros.cmake * Update HDF5PluginMacros.cmake * Restores maintainer mode in the autotools (#200) Maintainer mode should be enabled in development branches. Also adds helpful commenting. Add script bin/switch_maint_mode. Add file changes generated by bin reconfigure in src/H5Edefin.h src/H5Einit.h src/H5Epubgen.h src/H5Eterm.h * Update MANIFEST for switch_maint_mode. * Update so numbers to match 1.8.22 release. Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
* HDF5 1 8 fix fortran build on macs (#186)Allen Byrne2020-12-161-2/+2
| | | | | * Correct fortran and shared libs option * Fix for no shared fortran build
* 1.8 has extra fortran CMake option (#176)Allen Byrne2020-12-151-1/+1
| | | | | * 1.8 has extra fortran CMake option * Update license URL
* OESS-98 Update plugin build option (#171)Allen Byrne2020-12-152-1/+48
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* Update HDF5 1.8 copyright headers with updated copyright URL (#148)Larry Knox2020-12-04132-242/+242
| | | | | | | * Update URL for COPYING file in copyright headers. * Make fortran copyright headers uniformly spaced. * Update url for Copyright file in c++/src/footer.html.
* Multiple changes to bring branch up-to-date (#87)Allen Byrne2020-11-208-18/+18
| | | | | Correct TARGET variable and CMake config file location. Add option to allow filter plugins to be built inline. Update CMake tools macros.
* Merge from developAllen Byrne2020-10-074-3664/+3605
| | | | | github updates bin scripts parser updates
* Update formatingAllen Byrne2020-10-051-5/+1
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* Source formattedAllen Byrne2020-10-0174-24021/+21241
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* Merge clang-format changes from developAllen Byrne2020-10-0112-789/+913
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* Update hl/sr/H5LT files.Larry Knox2020-07-253-162/+168
| | | | Add bin/genparser to MANIFEST; remove bin/genltanalyze.
* Merge from 1.10-1.12-dev - LT parse needs updateAllen Byrne2020-07-201-1/+20
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* Fix HDFFV-10591Binh-Minh Ribler2020-07-062-17/+32
| | | | | | | | | | | Description: h52gif produced a segfault when a buffer overflow occurred because the data size was corrupted and became very large. This commit added a check on the data size against the buffer size to prevent the segfault. It also added error reporting to h52gif to display an error message instead of silently exiting when the failure occurred. Platforms tested: Linux/64 (jelly)
* Update configure and Makefile.ins after bin/reconfigure.Larry Knox2020-06-2214-14/+28
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* Fix ifort warning flag.Larry Knox2020-05-0414-0/+42
| | | | | | | | Restore AC_DEFUN([PAC_PROG_FC_DEFAULT_REALisDBLE] in m4/aclocal_fc.m4. Add --enable-symbols, --enable-profiling, and --enable-optimization options to autotools configure; all configure flags for --enable-production and --disable-production should match HDF5 1.10 and 1.12 production and debug default flags.
* Update to use optimization flags, C++ error flags, and correctLarry Knox2020-04-3014-0/+28
| | | | libhdf5.settings.in to remove unworkable changes.
* Fix NoFilter buildAllen Byrne2020-04-271-1/+1
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* Fix shadowed typeAllen Byrne2020-04-131-3/+3
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* TRILAB-192 update LTparse filesAllen Byrne2020-04-072-75/+77
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* TRILAB-192 - merge changes from developAllen Byrne2020-04-078-100/+50
| | | | Single source, config files, for warnings for both autotools and CMake. Update CMake libraries, tools, tests to use correct flags.
* Update LT filesAllen Byrne2020-04-015-161/+206
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* Autotools reconfigure updateAllen Byrne2020-03-3114-21/+48
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* TRILAB-192 merging warnings changes from developAllen Byrne2020-03-319-13/+68
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* Fix gif tool and h5dumpAllen Byrne2020-03-018-180/+187
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* Merge changes from other branchesAllen Byrne2020-02-2914-14/+14
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* HDFFV-11012, sanitize, warnings and tools idsAllen Byrne2020-02-113-15/+9
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* Merfge changes to CMake test options and add sanitizersAllen Byrne2020-01-208-11/+17
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* Merge pull request #2071 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/intel_warnings ↵Kimmy Mu2020-01-101-1/+1
| | | | | | | | | | | | | | | | | | | | | | to develop * commit '0a2bb11b248df6841daabca3970df5d8504adfc7': address problems from comments fix and address comments change according to previous comments add missing piece remove unnecessary check macro fix intel compile warnings Revert "fix warnings from Intel compiler" Revert "fix warnings and some text alignment" Revert "let hdf5 pick up the right compiler in Intel environment" Revert "fix issues from previous PR comments" Revert "using a different MACRO" using a different MACRO fix issues from previous PR comments let hdf5 pick up the right compiler in Intel environment fix warnings and some text alignment fix warnings from Intel compiler
* Ran bin/reconfigurebyrn2019-10-0714-0/+42
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* Add changes to Makefile.in files and four H5e*.h files from running ↵Larry Knox2019-08-2814-56/+70
| | | | bin/reconfigur.
* Fix merge issues for MPIAllen Byrne2019-08-231-6/+6
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* OESS-29 Fix shared MPI builds, more HD prefixAllen Byrne2019-08-226-92/+92
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