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* [svn-r29903] merge from trunk.Mohamad Chaarawi2016-05-0930-972/+3147
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| * [svn-r29653] fixed A variable that is specified as an argument to the ↵Scot Breitenfeld2016-04-071-1/+1
| | | | | | | | intrinsic procedure C_LOC must either have type and type parameters that are interoperable with a C type, or be a nonpolymorphic, scalar variable with no length type parameters.
| * [svn-r29649] changed indentation format, updated commentsScot Breitenfeld2016-04-061-17/+12
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| * [svn-r29648] FIX: HDFFV-8486 Scot Breitenfeld2016-04-066-122/+621
| | | | | | | | | | | | | | | | h5tbmake_table_f is missing the fill_data parameter (which is in the C counterpart) ADDED NEW API: h5tbread_table_f Tested: platypus, ostrich
| * [svn-r29646] FIX: HDFFV-9522 Scot Breitenfeld2016-04-061-5/+71
| | | | | | | | | | | | Add support for variable length datatypes in the High Level H5LT Fortran APIs Tested: platypus (gnu)
| * [svn-r29603] HDFFV-9746 Add test for "/" for H5LTpath_validScot Breitenfeld2016-04-011-0/+23
| | | | | | | | Tested: jam (gnu)
| * [svn-r29599] added comments to sourceScot Breitenfeld2016-03-301-12/+16
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| * [svn-r29554] Description:Binh-Minh Ribler2016-03-241-1/+0
| | | | | | | | Removed an extra line in the Copyright block. No need to test.
| * [svn-r29531] Normalization w/ revise_chunks in preparation for big merge.Dana Robinson2016-03-234-10/+5
| | | | | | | | | | | | | | hl and bin directories Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial w/ Java, Fortran, & C++
| * [svn-r29379] Add individual LT_VERS_* variables for wrapper libraries: c++, ↵Larry Knox2016-03-093-3/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | fortran, java, hl, hl/c++, hl/fortran to so that the shared object version numbers can be incremented independently. Disabled auto-increment of shared object version numbers by h5vers. Files modified: config/lt_vers.am java/src/jni/Makefile.am hl/src/Makefile.am hl/c++/src/Makefile.am hl/fortran/src/Makefile.am c++/src/Makefile.am bin/h5vers fortran/src/Makefile.am
| * [svn-r29364] Purpose: Improve C++ Packet Table libraryBinh-Minh Ribler2016-03-093-229/+159
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: Performed similar improvement as the C Packet Table library. - Removed the VLPT_REMOVED ifdef around class VL_PacketTable - Moved VL_PacketTable::IsVariableLength to PacketTable - Moved VL_PacketTable::FreeReadBuff to PacketTable::FreeBuff - Added overloaded constructor to FL_PacketTable that takes a property list ID and call the new C API H5PTcreate. - Added accessor wrappers to class PacketTable, per HDFFV-8623/patch 003. /* Returns the ID of the dataset associated with the packet table */ hid_t GetDataset(); /* Returns the ID of the datatype the packet table uses */ hid_t GetDatatype(); - Replaced appropriate calls in tests - Various cleanup Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
| * [svn-r29360] Purpose: Adding testBinh-Minh Ribler2016-03-091-5/+601
| | | | | | | | | | | | | | | | | | | | Description: Added several tests for packet table that were missing from the previous update. Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
| * [svn-r29337] Cleaning warnings in Fortran code.Dana Robinson2016-03-081-2/+0
| | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial w/ Fortran
| * [svn-r29336] Removed unused variables from Fortran code.Dana Robinson2016-03-081-7/+0
| | | | | | | | | | | | | | Updated gnu Fortran flags. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial w/ Fortran
| * [svn-r29295] Replaced H5Acreate with H5Acreate2 in ↵Larry Knox2016-03-061-1/+1
| | | | | | | | | | | | hl/test/test_packet_vlen.c line 758 to eliminate error with configure option --wit-default-api-version=v16. Tested with option and h5committest.new.
| * [svn-r29272] Add code to deal with two source files for test_packet test.Allen Byrne2016-03-041-1/+11
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| * [svn-r29269] Purpose: Improve Packet Table libraryBinh-Minh Ribler2016-03-046-576/+1643
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: The Packet Table API used to have fixed-length and variable-length functions (i.e., H5PTcreate_fl and H5PTcreate_vl), but in 2006, the vlen functions were ifdef'ed out with VLPT_REMOVED, see HDFFV-442. The majority of this revision includes removing unused vlen stuff, adding various vlen tests, initial code cleanup, and first pass of commenting. Details: - Removed the VLPT_REMOVED ifdef, but keep H5PTis_varlen and the free function because they are useful or even needed, but the free function's name is changed to be more appropriate for both read/write buffers, i.e., H5PTfree_vlen_buff. - The new test file, test_packet_vlen.c, contains tests showing packet tables, containing various types of vlen data, can be created with the fixed-length function - Two accessor functions were added per HDFFV-8623/patch 003. /* Returns the ID of the dataset associated with the packet table */ hid_t H5PTget_dataset(hid_t table_id); /* Returns the ID of the datatype the packet table uses */ hid_t H5PTget_type(hid_t table_id); - Various cleanup: replacing 0/-1 with SUCCEED/FAIL and H5I_BADID with H5I_INVALID_HID, and removing many warnings. Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
| * [svn-r29226] HDFFV-9552: merge in java code.Allen Byrne2016-02-293-4/+4
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| * [svn-r29007] Fixed typos in h52gif test.Dana Robinson2016-01-281-1/+1
| | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial autotools
* | [svn-r28715] - merge from trunkMohamad Chaarawi2015-12-217-85/+5173
|\ \ | |/ | | | | - fix farray, earray, and btree test to use correct function to retrieve internal file struct.
| * [svn-r28553] Merge of r28436 from revise_chunks. Cleans up warnings exposedDana Robinson2015-12-104-227/+241
| | | | | | | | | | | | | | by gcc 5.2 in the flex/bison code. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
| * [svn-r28346] Description:Quincey Koziol2015-11-151-3/+5
| | | | | | | | | | | | | | | | Bring in cleanups from revise_chunks branch. Tested on: MacOSX/64 10.11.1 (amazon) w/serial & parallel (too minor to require full h5committest)
| * [svn-r28340] Remove dependencies due to flex/bisonAllen Byrne2015-11-131-10/+0
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| * [svn-r28336] Remove flex/bison generationAllen Byrne2015-11-131-72/+3
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| * [svn-r28332] Updated autogen.sh to not run flex/bison.Dana Robinson2015-11-135-0/+5002
|/ | | | | | | | | This was giving a lot of users headaches and the parser code rarely changes. There is now a new script (bin/genparser) which can be run as needed. Tested on: Ubuntu 15.10 (x86_64 Linux 4.2.0) gcc 5.2.1, flex 2.5.39, bison 3.0.2
* [svn-r28019] fix mem leaks.Mohamad Chaarawi2015-10-091-2/+11
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* [svn-r28017] mem leak fix.Mohamad Chaarawi2015-10-091-0/+1
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* [svn-r27927] Fix dependencies of flex/bison files.Allen Byrne2015-10-011-2/+4
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* [svn-r27913] Need to create the directory for the gen filesAllen Byrne2015-09-291-0/+1
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* [svn-r27911] Add back in the build dirAllen Byrne2015-09-291-5/+5
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* [svn-r27910] Rework flex-bison generated files to eliminate dual depends ↵Allen Byrne2015-09-291-27/+21
| | | | when building both shared and static
* [svn-r27906] Remove header file name as it is not a direct target (derived ↵Allen Byrne2015-09-291-1/+1
| | | | during BISON process).
* [svn-r27905] Add depends to be sure file existsAllen Byrne2015-09-281-0/+2
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* [svn-r27904] Correct missing target name charsAllen Byrne2015-09-281-2/+2
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* [svn-r27895] Rework the generated file dependencies and commands.Allen Byrne2015-09-281-5/+1
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* [svn-r27854] fixed typo in name of fileScot Breitenfeld2015-09-221-0/+0
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* [svn-r27846] Fix generated files process.Allen Byrne2015-09-211-0/+39
| | | | Add script for post processing of flex/bison files.
* [svn-r27828] Removed Perl-generated header files and H5LT parse code created ↵Dana Robinson2015-09-183-5139/+0
| | | | | | by flex/bison. Tested on: jam
* [svn-r27818] Minor warning fixes.Dana Robinson2015-09-171-2/+2
| | | | Tested on: h5committest
* [svn-r27802] Added an explicit -I m4 to the aclocal line.Dana Robinson2015-09-162-0/+2
| | | | | | The files in the m4 directory were not getting picked up on some platforms. Tested on: jam
* [svn-r27799] Minor warning fixes in the high-level library.Dana Robinson2015-09-166-20/+24
| | | | Tested on: jam (too minor for h5committest)
* [svn-r27796] Remove duplicated if blockAllen Byrne2015-09-151-5/+0
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* [svn-r27795] Removed some autotools generated files that were not caught byDana Robinson2015-09-153-4384/+0
| | | | | | the last checkin. Tested on: bin/chkmanifest
* [svn-r27794] Reintegration merge of features/autotools_rework branch with trunkDana Robinson2015-09-1516-15228/+64
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | NOTES: - Developers will have to run autogen.sh before building with the autotools. - autogen.sh takes the -p option to mimic the old bin/reconfigure behavior. - The generated error, overflow and version headers have been left in place. - The generated H5LT parser code has also been left in place. - There are no changes for CMake users at this time. Tested on: h5committest
| * [svn-r27787] Merge of r27632-27674 from the trunk.Dana Robinson2015-09-151-4/+4
| | | | | | | | Tested on: h5committest
| * [svn-r27745] Merge trunk revision 27744Allen Byrne2015-09-101-9/+27
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| * [svn-r27729] add extra flags to the bison and flex command linesAllen Byrne2015-09-091-3/+3
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| * [svn-r27725] Add initial commands to properly build the generated files.Allen Byrne2015-09-091-5/+50
| | | | | | | | | | | | Added HDF5_GENERATE_HEADERS ON to cacheinit.cmake file. Tested: local linux
| * [svn-r27638] Merged r27500-27631 from trunk.Dana Robinson2015-09-016-36/+38
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| * \ [svn-r27507] Merge of r27237-27500 from the trunk.Dana Robinson2015-08-1433-12372/+5033
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | Tested w/ h5committest NOTES: - The manifest may still be messed up. - Cmake fails since the dual binary work needs to be merged with this repo's CMake externals.