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* [svn-r25188] Implement change to cmake_ext_mod config folderAllen Byrne2014-05-141-1/+1
| | | | Tested: local linux
* [svn-r25181] Snapshot version 1.9 release 180HDF Tester2014-05-113-3/+3
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* [svn-r25158] Snapshot version 1.9 release 179HDF Tester2014-05-043-3/+3
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* [svn-r25126] Snapshot version 1.9 release 178HDF Tester2014-04-273-3/+3
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* [svn-r25117] Removed LT_ADD_LIBHDF5_DEPENDENCY configure conditional to roll ↵Larry Knox2014-04-2517-41/+12
| | | | | | | | | | | back fix for removing rpaths from l ib files. The fix also removed dependencies on libhdf5, etc. when the --disable-sharedlib-rpath co nfigure option was invoked. Added instead configure variable hardcode_into_lib=no. This removes rpath from lib files on Linux and solaris machines. Tested with h5committest on jam, koala, ostrich and platypus (cmake), and with configure option --disable-sharedlib-rpath on emu, platypus and quail.
* [svn-r25034] Snapshot version 1.9 release 177HDF Tester2014-04-133-3/+3
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* [svn-r24997] Added compiler versions for mpich to settings file and ↵Larry Knox2014-04-096-25/+52
| | | | | | | | | | | | | configure summary. For make installcheck, compile and run installed examples using the installed scripts. They were being compiled but not run. Add Fortran2003 examples to the run-ex-fortran script when fortran2003 is enabled. Set flag to -O3 in production mode for Intel compilers other than those with specified other settings. Gentoo patches: Remove unnecessary setting of LD_LIBRARY_PATH from configure. Prevent potential array subscript out of bounds error in perform/pio_engine.c and sio_engine.c. Tested with h5committest on jam, koala, ostrich and platypus, on emu and kite, and parallel tests on jam, koala and platypus with mpich built with gnu 4.8.2 and with intel compilers.
* [svn-r24989] Problem:Albert Cheng2014-04-091-1/+1
| | | | | | | | | | | | | AIX compiler complains that: ex_ds1.f90, line 89.16: 1512-050 (W) Field separator is missing, in literal FMT specifier, after edit descriptor X. A comma is assumed. Line 89: WRITE(*,'(/,5X 3(A,1X),I0,A,L1)') 'Is',TRIM(DS_1_NAME),& Solution: Added the missing comma after "5X". Tested: AIX system.
* [svn-r24987] HDFFV-8709, HDFFV-8776, HDFFV-8777, HDFFV-8778Allen Byrne2014-04-084-19/+23
| | | | | | Apply user patches, regenerate and patch results for windows. Miminum changes tested locally
* [svn-r24966] Snapshot version 1.9 release 176HDF Tester2014-04-063-3/+3
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* [svn-r24948] Group tests by Common nameAllen Byrne2014-04-027-28/+32
| | | | | | Remove WIN32 AND NOT CYGWIN if blocks - should be just WIN32 Tested: local linux CMake
* [svn-r24937] Adds an H5free_memory() function to the library for use withDana Robinson2014-03-313-24/+24
| | | | | | | | | | | | functions that return library-allocated memory. The test and tool code were modified to use this new function where it's appropriate. Fixes HDFFV-7710, HDFFV-8519, and HDFFV-8551 Tested on: 64-bit Windows 7 w/ VS2012 32-bit LE linux w/ parallel and fortran (jam) 32-bit LE linux w/ fortran and C++ (jam)
* [svn-r24936] Correct declaration nameAllen Byrne2014-03-311-1/+1
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* [svn-r24935] Correct line numbersAllen Byrne2014-03-311-73/+73
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* [svn-r24932] HDFFV-8290: Remove unnecessary $(srcdir) and use AM_CPPFLAGS ↵Allen Byrne2014-03-3117-917/+6149
| | | | | | instead of INCLUDES. Update automake to 1.14.1 h5committest
* [svn-r24931] Add interface property to targetAllen Byrne2014-03-311-3/+9
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* [svn-r24924] Snapshot version 1.9 release 175HDF Tester2014-03-303-3/+3
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* [svn-r24895] Add INTERFACE properties to libsAllen Byrne2014-03-251-1/+4
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* [svn-r24889] Fix fortran mod file handling and packingAllen Byrne2014-03-241-8/+8
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* [svn-r24887] Fix fortran mod file handling and packingAllen Byrne2014-03-241-4/+10
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* [svn-r24875] Description:Quincey Koziol2014-03-241-6/+2
| | | | | | | | Update with corresponding information that was changed in hl/src/H5Tanalyze.l in r24869. Tested on: Linux 2.6.32-431.5.1.el6.ppc64/64 (ostrich)
* [svn-r24869] Description:Quincey Koziol2014-03-234-12/+11
| | | | | | | | | | | | | | | | | | | | | | | | | Clean up more compiler warnings, plus merge a few Coverity bug fixes from the hdf5_1_8_coverity branch back to the trunk: r20877: Purpose: Fix coverity issue 1723 Description: Modified test_generate in hl/test_image to close file "f" before exit, even if an error occurs. r20879: Issue 63: change check of return of H5Tget_nmembers to <=0. No need to go futher if call fails as well as empty. r20881: Coverity #659 in Run 46: I changed the Line 442 where it tries to check whether FLAG_PRINTED is TRUE. But it had just been set to FALSE. I took out the condition check in the print statement. Tested on: Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & Parallel (too minor to require h5committest)
* [svn-r24864] Description:Quincey Koziol2014-03-2114-14/+0
| | | | | | | | | | | | | | | | | | Remove all traces of MPI-POSIX VFD and GPFS detection/code. Remove remaining traces of stream VFD. Remove testpar/t_posix_compliant test (it's not actually verifying anything). Clean up H5D__mpio_opt_possible() further. Moved environment variable that disables MPI collective operations into MPI-IO VFD (instead of it being in src/H5S.c). A few other small code cleanups. Tested on: Mac OSX/64 10.9.2 (amazon) w/parallel & serial
* [svn-r24826] HDFFV-8700 -Allen Byrne2014-03-182-5/+7
| | | | | | | | KitWare recommendations: Change CMake commands to lower case. Bump up CMake minimum versions. Split test file into separate file for h5repack test. Tested: local linux
* [svn-r24824] HDFFV-8700 -Allen Byrne2014-03-184-12/+12
| | | | | | | | KitWare recommendations: Change CMake commands to lower case. Bump up CMake minimum versions. Split test file into separate file for h5repack test. Tested: local linux
* [svn-r24804] Description:Quincey Koziol2014-03-161-10/+14
| | | | | | | | | | | | | | | | | | | | | | | | Brought changes from Coverity branch back to trunk, and cleaned up misc. other warnings & formatting issues: r20833: Fixed Coverity 667 and 668 with real integer overflow tests this time. r20834: Use HDstrncpy and HDstrncat. --gh r20835: Change to use strncpy - use base_len + 1 for line 156, use HDstrlen(path) + 1 for line 159 r20836: Fixed coverity 585 by casting output of fgetc() to a char. r20837: Changed sprintf calls to snprintf with size 1 less than the allocated buffer to address coverity issue #967. Tested on: Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & parallel (too minor to require h5committest)
* [svn-r24803] Description:Quincey Koziol2014-03-163-73/+0
| | | | | | | | | | | | Rename GCC_DIAG_OFF/ON macros to H5_GCC_DIAG_OFF/ON and move from src/H5private.h to src/H5public.h. Wrap typedef of hsize_t and hssize_t in DIAG_OFF(long-long) macros. Clean up a bunch of "macro '-' is unused" warnings. Tested on: Mac OSX/64 10.9.2 (amazon) w/gcc 4.8.2, C++, FORTRAN, parallel (too minor to require h5committest)
* [svn-r24789] Bump up the minimum cmake versionAllen Byrne2014-03-1315-18/+18
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* [svn-r24782] HDFFV-8700 -Allen Byrne2014-03-1110-33/+34
| | | | KitWare recommendations: Change CMake commands to lower case.
* [svn-r24781] HDFFV-8700 -Allen Byrne2014-03-1117-184/+184
| | | | | | | KitWare recommendations: Change CMake commands to lower case. Remove INCLUDE_DIRECTORIES in src for target level includes. Change ADD_DEFINITIONS package debug defines into CMake option. Remove -DNDEBUG
* [svn-r24770] Snapshot version 1.9 release 174HDF Tester2014-03-093-3/+3
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* [svn-r24769] Description:Quincey Koziol2014-03-072-117/+42
| | | | | | | | | Check in Mohamad's changes to support collective I/O on point selections, along with some other minor cleanups. Tested on: Mac OSX/64 10.9.2 (amazon) w/parallel & serial (h5committest forthcoming)
* [svn-r24753] Snapshot version 1.9 release 173HDF Tester2014-03-023-3/+3
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* [svn-r24726] Description:Quincey Koziol2014-02-201-5/+12
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Revert some earlier usage of strncpy, which was incorrect. Bring Coverity changes from branch back to trunk: r20821: Use HDstrncpy. --gh (Fixed already, with strdup) r20822: (Not merged, incorrect use of HDstrncpy()) r20823: (Not merged, incorrect use of HDstrncpy()) r20824: Maintenance: Bug fix: addressed CID 666. Value stored at *expression_len should be used in the call to HD5packFstring to avoid overflow (and unnecessary arithmetic calculation and casting) r20825: Issue 642: Added check for error and handler with print to stderr and exit. r20826: Undo revision 20818, as that issue has already been fixed in the 1.8 branch and trunk (but not coverity branch) r20827: (Not merged, incorrect use of HDstrncpy()) r20828: Use HDstrncpy. --gh (Corrected use of strncpy()) r20829: Check return of H5Lget_val(print_udata->fid, path, targbuf, linfo->u.val_size + 1, H5P_DEFAULT) and if error set trgbuf[0] to 0. Check if H5Lunpack_elink_val(targbuf, linfo->u.val_size, NULL, &filename, &objname) was successful and allow print. Otherwise filename and objname are not created. (init those to NULL) r20830: resolved coverity issues 939, 940, 941, 944, and 947. all were complaints about use of sprintf, and in all cases, the buffers used were large enough for all eventualities. Resolved issue by replacing calls to sprintf with calls to snprintf. r20831: Maintenance: Addressed CID 852 Replaced sprintf with snprintf r20832: Purpose: Fix valgrind issues with hl/examples/ex_image2 Description: Modified hl/examples/ex_image2 to free global "gbuf" before exit. Tested on: Mac OSX/64 10.9.1 (amaon) w/C++, FORTRAN & Threadsafety (too minor to require h5committest)
* [svn-r24716] Snapshot version 1.9 release 172HDF Tester2014-02-163-3/+3
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* [svn-r24698] Snapshot version 1.9 release 171HDF Tester2014-02-093-3/+3
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* [svn-r24682] Add IF SHARED block around Windows PDB file generation command.Allen Byrne2014-02-041-2/+3
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* [svn-r24676] Snapshot version 1.9 release 170HDF Tester2014-02-023-3/+3
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* [svn-r24465] Snapshot version 1.9 release 169HDF Tester2013-11-253-3/+3
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* [svn-r24400] Maintenance: When the libraries are built and tested in place, ↵Elena Pourmal2013-11-032-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | several files are left behind by "make distclean" (see below); modified appropriate Makefile.am files and ran bin/reconfigure to create Makefile.in to fix the problem. Here is the list of the files "make disclean" doesn't remove: tools/h5dump/testfiles tools/h5repack/testfiles/h5diff_attr1.h5 tools/h5repack/testfiles/tfamily00000.h5 tools/h5repack/testfiles/tfamily00010.h5 tools/h5repack/testfiles/tfamily00002.h5 tools/h5repack/testfiles/tfamily00004.h5 tools/h5repack/testfiles/tfamily00006.h5 tools/h5repack/testfiles/tfamily00008.h5 tools/h5repack/testfiles/tfamily00001.h5 tools/h5repack/testfiles/tfamily00003.h5 tools/h5repack/testfiles/tfamily00005.h5 tools/h5repack/testfiles/tfamily00007.h5 tools/h5repack/testfiles/tfamily00009.h5 tools/h5jam/testfiles/h5jam-ub-nohdf5.txt.err-sav tools/h5jam/testfiles/h5jam-help.txt.err-sav tools/h5jam/testfiles/h5unjam-help.txt.err-sav tools/h5jam/testfiles/h5jam-ub-nohdf5.txt.out-sav tools/h5jam/testfiles/h5jam-help.txt.out-sav tools/h5jam/testfiles/h5unjam-help.txt.out-sav hl/fortran/test/dsetf5.h5 c++/test/tattr_multi.h5 c++/test/tattr_scalar.h5 c++/test/tfattrs.h5 c++/test/tattr_basic.h5 c++/test/tattr_compound.h5 c++/test/tattr_dtype.h5 Tested on jam and emu in place and using srcdir with the svn stat command. This fix doesn't address two problems: tool/h5dump/testfiles directory is not removed by "make distclean" and it should be tools/misc/testfiles directory is removed by "make distclean" and it shouldn't be
* [svn-r24392] Cleanup testfiles from scripts. Update lists of files to be ↵Allen Byrne2013-11-015-4/+48
| | | | | | cleaned. CMake update to clean testfiles. Tested: local cmake, autools, and h5committest
* [svn-r24390] Fixed a redefinition of HDfree in the HL library.Dana Robinson2013-11-011-2/+0
| | | | | | | Tested on: 32-bit LE linux (jam) There are no behavior changes, so testing was minimal.
* [svn-r24376] Updated all code to use HDmalloc, HDcalloc, and HDfree.Dana Robinson2013-10-3113-226/+207
| | | | | | | | | | | | | Prep work for adding a memory free function, part of HDFFV-8551. Tested on: 32-bit LE linux (jam) * with C++, Fortran * with thread safety on These are minor changes (almost entirely renaming foo functions to HDfoo) that don't change functionality. This should not require a full commit test.
* [svn-r24362] Snapshot version 1.9 release 168HDF Tester2013-10-273-3/+3
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* [svn-r24334] Snapshot version 1.9 release 167HDF Tester2013-10-203-3/+3
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* [svn-r24287] Snapshot version 1.9 release 166HDF Tester2013-10-133-3/+3
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* [svn-r24270] checkin coverity changes from 10/4/2013.Mohamad Chaarawi2013-10-091-3/+6
| | | | tested with h5committest
* [svn-r24256] Description:Quincey Koziol2013-10-041-1/+1
| | | | | | | | Clean up warnings Tested on: Mac OSX/64 10.8.4 (amazon) w/C++ & FORTRAN (too minor for h5committest)
* [svn-r24218] Snapshot version 1.9 release 165HDF Tester2013-09-293-3/+3
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* [svn-r24194] Don't add hdf5 library dependencies to lib files when ↵Larry Knox2013-09-2417-12/+41
| | | | | | --disable-sharedlib-rpath configure option is invoked. Fix for HDFFV-8276. Tested with h5committest and on hdf-duck.
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