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* Update java logger version (#2644)Allen Byrne2023-04-048-16/+16
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* Develop jni trans (#2266)Allen Byrne2022-12-063-83/+114
| | | | | | | | | * Add compound and refactor out atomic types * Add Array String tests back * Convert Attribute version of compound example * Update transfer atom8ic read to return object
* develop Merge doxygen from 1.12 branch (#2095)Allen Byrne2022-09-141-1/+1
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* Update CMake code to 3.18 minimum version (#2080)Allen Byrne2022-09-035-5/+5
| | | | | * Update CMake code to 3.18 minimum version * Updated release note
* Fix Java tests for Developer build modes (#2079)jhendersonHDF2022-08-294-4/+4
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* Develop cmake clean (#1971)Allen Byrne2022-08-074-4/+64
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* Develop clang 13 format (#1933)Allen Byrne2022-07-263-4/+4
| | | | | * Update format source to clang 13 * More format changes
* Improve handling of copying of dynamic libraries and clean them up after (#1681)Quincey Koziol2022-04-244-28/+36
| | | test finishes.
* Develop clang format java (#1653)Allen Byrne2022-04-1955-1765/+1924
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* various cleanup java test, test files, comments (#1363)Allen Byrne2022-01-182-8/+13
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* Develop java newrefs fixes for obj ref datasets (#1354)Allen Byrne2022-01-182-210/+149
| | | | Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
* Update the java slf4j logging jars to latest 1.7.33 (#1369)Allen Byrne2022-01-188-16/+16
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* Add tests for H5Ocopy of new object refs (#1338)Allen Byrne2022-01-082-152/+121
| | | | | | | | | | | * Add tests for H5Ocopy of new object refs * Correct class name * Skip test because of issue with debug assertions * Update reference file * Fix object examples for new refs
* Fixed Spelling Errors (#1166)Scot Breitenfeld2021-12-072-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * fixed missed closing of a dataset * fixed missed closing of a dataset * fixed typo in error return * Committing clang-format changes * minor edits * code format * Committing clang-format changes * code format * minor edit * switched from using MPI_count, to actual bytes written for H5FD_mpio_debug rw debugging * Committing clang-format changes * changed size_i in printf to reflect the I/O. * Committing clang-format changes * Fixed seg fault with xlf on BE with -qintsize=8 * fixed error function string * spelling corrections via codespell, added new spell check github actions * Committing clang-format changes * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * Committing clang-format changes * misc * misc * misc * misc * misc * misc * Committing clang-format changes * misc * work around for https://github.com/codespell-project/codespell/issues/2137 * misc * added missing file * misc * misc. * misc * switch to using Codespell with GitHub Actions * misc. * misc. * fixed more sp errors * Fix new typos found by codespell. * fixed proceed with precede * fixed variable in fortran test * fixed minnum * updated spelling list Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
* #386 copyright corrections for java folder (#389)Allen Byrne2021-02-2660-60/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 convert plugin option to FetchContent, add tests * Fixes for pkcfg files because of plugin option * OESS-98 fix tools test for plugins * Keep doxygen comments under 100 chars long - format hint * Whitespace * HDFFV-11144 - Reclassify CMake messages * HDFFV-11099/11100 added help text * Reworked switch statement to compare string instead * Fix typo * Update CDash mode * Correct name of threadsafe * Correct option name * Undo accidental commit * Note LLVM 10 to 11 format default changes * Update format plugin * Undo clang-format version 11 changes * One more correction * Update supported platforms * Revert whitespace changes * Correct whitespace * Changes from PR#3 * HDFFV-11213 added option to control gcc10 warnings diagnostics * HDFFV-11212 Use the new references correctly in JNI utility and tests * format source * Fix typo * Add new test file * HDFFV-11212 - update test and remove unused arg * Minor non-space formatting changes * Use H5I_INVALID_ID instead of "-1" * source formatting * add missing testfile, update jni function * Undo commit of debug code * remove mislocated file * Fix h5repack test for handling of fapls and id close * Update h5diff test files usage text * HDFFV-11212 add new ref tests for JNI export dataset * src format update * Remove blank line typo * src format typo * long double requires %Lg * Another long double foramt specifer S.B. %Lg * issue with t128bit test * Windows issue with h5dump and type. * Fix review issues * refactor function nesting and fix error checks * format fixes * Remove untested functions and javadoc quiet comments * Restore TRY block. * Change string append errors to memory exception * revert to H5_JNI_FATAL_ERROR - support functions need work * Add assertion error for h5util functions * remove duplicate function * format fix * Revert HD function error handling * Update copyright comments * GH #386 java folder copyright corrections * Whitespace
* Primary change is HDFFV-11212 - new refs and JNI (#372)Allen Byrne2021-02-2551-350/+350
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 convert plugin option to FetchContent, add tests * Fixes for pkcfg files because of plugin option * OESS-98 fix tools test for plugins * Keep doxygen comments under 100 chars long - format hint * Whitespace * HDFFV-11144 - Reclassify CMake messages * HDFFV-11099/11100 added help text * Reworked switch statement to compare string instead * Fix typo * Update CDash mode * Correct name of threadsafe * Correct option name * Undo accidental commit * Note LLVM 10 to 11 format default changes * Update format plugin * Undo clang-format version 11 changes * One more correction * Update supported platforms * Revert whitespace changes * Correct whitespace * Changes from PR#3 * HDFFV-11213 added option to control gcc10 warnings diagnostics * HDFFV-11212 Use the new references correctly in JNI utility and tests * format source * Fix typo * Add new test file * HDFFV-11212 - update test and remove unused arg * Minor non-space formatting changes * Use H5I_INVALID_ID instead of "-1" * source formatting * add missing testfile, update jni function * Undo commit of debug code * remove mislocated file * Fix h5repack test for handling of fapls and id close * Update h5diff test files usage text * HDFFV-11212 add new ref tests for JNI export dataset * src format update * Remove blank line typo * src format typo * long double requires %Lg * Another long double foramt specifer S.B. %Lg * issue with t128bit test * Windows issue with h5dump and type. * Fix review issues * refactor function nesting and fix error checks * format fixes * Remove untested functions and javadoc quiet comments * Restore TRY block. * Change string append errors to memory exception * revert to H5_JNI_FATAL_ERROR - support functions need work * Add assertion error for h5util functions * remove duplicate function * format fix * Revert HD function error handling * Update copyright comments
* Update license url part2 (#333)Larry Knox2021-02-1760-60/+60
| | | | | | * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING file - files not in src or test.
* Modify temporary rpath for testing in java example scripts. (#230)Larry Knox2020-12-294-5/+37
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* CMake: MINGW implies WIN32Michel Zou2020-10-304-4/+4
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* Trim trailing whitespaceQuincey Koziol2020-04-205-5/+5
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* TRILAB-142 Change minimum CMake version to 3.12Allen Byrne2020-02-215-5/+5
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* Small fixes for tools and skip autotools tests for no filterAllen Byrne2020-01-291-20/+24
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* Squashed commit of the token_refactoring branch:Dana Robinson2020-01-164-39/+40
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* HDFFV-11001 need to qualify all by parallel or serial typesAllen Byrne2020-01-154-4/+4
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* HDFFV-11001 Add fine control over testingAllen Byrne2020-01-154-4/+4
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* HDFFV-10995 - add missing importAllen Byrne2020-01-082-0/+2
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* HDFFV-10995 - need to add importAllen Byrne2020-01-082-0/+2
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* HDFFV-10995 adjust testing to tolerate non-US localeAllen Byrne2020-01-082-2/+2
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* small syntax changesAllen Byrne2019-09-194-19/+20
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* Fix compiler warnings with diabled ROS3 and HDFS VFDs.Jacob Smith2019-08-141-11/+3
| | | | | | Fix misuse of [HD]strncpy and [HD]snprintf. Minor formatting changes. Fix test cleanup issue with java groups example.
* Use generator expr to get correct nameAllen Byrne2019-07-224-141/+84
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* Correct java load library name accessAllen Byrne2019-07-184-8/+12
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* HDFFV-10845 fix configure check and PATHsAllen Byrne2019-07-174-4/+4
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* Change how name is retrievedAllen Byrne2019-07-084-4/+8
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* HDFFV-10581 remove special name checkingAllen Byrne2019-07-084-4/+4
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* HDFFV-10703 macro vars need quotesAllen Byrne2019-02-152-5/+4
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* HDFFV-10703 Update CMake commands to latest standardAllen Byrne2019-02-154-12/+12
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* Correct namesAllen Byrne2018-08-301-3/+0
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* Call new functionAllen Byrne2018-08-301-0/+2
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* Fix typoAllen Byrne2018-08-281-1/+1
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* HD prefix and whitespaceAllen Byrne2018-08-281-13/+16
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* Revert testfile FILE changeAllen Byrne2018-08-242-2/+2
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* change FILE pathAllen Byrne2018-08-242-2/+2
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* Add testfiles to data copyAllen Byrne2018-08-231-0/+3
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* Same changes needed for examples as testAllen Byrne2018-08-234-40/+136
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* Update Java util lib, Refactor H5D write VL to match readAllen Byrne2018-06-278-20/+20
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* HDFFV-9739 factor out tests into separate JUnitAllen Byrne2018-05-151-20/+20
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* TRILABS-20 set a compiler name on all project commandsAllen Byrne2018-04-205-5/+5
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* TRILABS-19 Initial conversion of include_directories to targetsAllen Byrne2018-04-174-20/+0
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* Change CMake min to 3.10Allen Byrne2018-03-095-5/+5
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