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* Brings the HL GIF tools configure changes from develop (#2362)Dana Robinson2022-12-245-38/+66
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* Update configure 1 14 0 (#2346)Larry Knox2022-12-225-0/+5
| | | | | * Update configure and Makefile.ins. * disable CMake Installation.
* Initial updates for HDF5 1.14.0 release December 2022 (#2292)Larry Knox2022-12-135-0/+7482
| | | | | | | | | | | | | * Initial updates for HDF5 1.14.0 release December 2022 Update so numbers for release Set version to 1.14.0 Switch default build mode to production for release in configure.ac lines435 and 442 Switch AM_MAINTAINER_MODE to disabled with bin/switch_maint_mode Set HDF5_GENERATE_HEADERS to OFF in src/CMakeLists.txt Commit Makefile.ins and other generated files for release except 2 ...~ files and autom4te.cache.
* Develop jni trans (#2266)Allen Byrne2022-12-063-83/+114
| | | | | | | | | * Add compound and refactor out atomic types * Add Array String tests back * Convert Attribute version of compound example * Update transfer atom8ic read to return object
* develop Merge doxygen from 1.12 branch (#2095)Allen Byrne2022-09-141-1/+1
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* Update CMake code to 3.18 minimum version (#2080)Allen Byrne2022-09-035-5/+5
| | | | | * Update CMake code to 3.18 minimum version * Updated release note
* Fix Java tests for Developer build modes (#2079)jhendersonHDF2022-08-294-4/+4
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* Develop cmake clean (#1971)Allen Byrne2022-08-074-4/+64
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* Develop clang 13 format (#1933)Allen Byrne2022-07-263-4/+4
| | | | | * Update format source to clang 13 * More format changes
* Improve handling of copying of dynamic libraries and clean them up after (#1681)Quincey Koziol2022-04-244-28/+36
| | | test finishes.
* Develop clang format java (#1653)Allen Byrne2022-04-1955-1765/+1924
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* various cleanup java test, test files, comments (#1363)Allen Byrne2022-01-182-8/+13
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* Develop java newrefs fixes for obj ref datasets (#1354)Allen Byrne2022-01-182-210/+149
| | | | Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
* Update the java slf4j logging jars to latest 1.7.33 (#1369)Allen Byrne2022-01-188-16/+16
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* Add tests for H5Ocopy of new object refs (#1338)Allen Byrne2022-01-082-152/+121
| | | | | | | | | | | * Add tests for H5Ocopy of new object refs * Correct class name * Skip test because of issue with debug assertions * Update reference file * Fix object examples for new refs
* Fixed Spelling Errors (#1166)Scot Breitenfeld2021-12-072-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * fixed missed closing of a dataset * fixed missed closing of a dataset * fixed typo in error return * Committing clang-format changes * minor edits * code format * Committing clang-format changes * code format * minor edit * switched from using MPI_count, to actual bytes written for H5FD_mpio_debug rw debugging * Committing clang-format changes * changed size_i in printf to reflect the I/O. * Committing clang-format changes * Fixed seg fault with xlf on BE with -qintsize=8 * fixed error function string * spelling corrections via codespell, added new spell check github actions * Committing clang-format changes * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * Committing clang-format changes * misc * misc * misc * misc * misc * misc * Committing clang-format changes * misc * work around for https://github.com/codespell-project/codespell/issues/2137 * misc * added missing file * misc * misc. * misc * switch to using Codespell with GitHub Actions * misc. * misc. * fixed more sp errors * Fix new typos found by codespell. * fixed proceed with precede * fixed variable in fortran test * fixed minnum * updated spelling list Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
* #386 copyright corrections for java folder (#389)Allen Byrne2021-02-2660-60/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 convert plugin option to FetchContent, add tests * Fixes for pkcfg files because of plugin option * OESS-98 fix tools test for plugins * Keep doxygen comments under 100 chars long - format hint * Whitespace * HDFFV-11144 - Reclassify CMake messages * HDFFV-11099/11100 added help text * Reworked switch statement to compare string instead * Fix typo * Update CDash mode * Correct name of threadsafe * Correct option name * Undo accidental commit * Note LLVM 10 to 11 format default changes * Update format plugin * Undo clang-format version 11 changes * One more correction * Update supported platforms * Revert whitespace changes * Correct whitespace * Changes from PR#3 * HDFFV-11213 added option to control gcc10 warnings diagnostics * HDFFV-11212 Use the new references correctly in JNI utility and tests * format source * Fix typo * Add new test file * HDFFV-11212 - update test and remove unused arg * Minor non-space formatting changes * Use H5I_INVALID_ID instead of "-1" * source formatting * add missing testfile, update jni function * Undo commit of debug code * remove mislocated file * Fix h5repack test for handling of fapls and id close * Update h5diff test files usage text * HDFFV-11212 add new ref tests for JNI export dataset * src format update * Remove blank line typo * src format typo * long double requires %Lg * Another long double foramt specifer S.B. %Lg * issue with t128bit test * Windows issue with h5dump and type. * Fix review issues * refactor function nesting and fix error checks * format fixes * Remove untested functions and javadoc quiet comments * Restore TRY block. * Change string append errors to memory exception * revert to H5_JNI_FATAL_ERROR - support functions need work * Add assertion error for h5util functions * remove duplicate function * format fix * Revert HD function error handling * Update copyright comments * GH #386 java folder copyright corrections * Whitespace
* Primary change is HDFFV-11212 - new refs and JNI (#372)Allen Byrne2021-02-2551-350/+350
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 convert plugin option to FetchContent, add tests * Fixes for pkcfg files because of plugin option * OESS-98 fix tools test for plugins * Keep doxygen comments under 100 chars long - format hint * Whitespace * HDFFV-11144 - Reclassify CMake messages * HDFFV-11099/11100 added help text * Reworked switch statement to compare string instead * Fix typo * Update CDash mode * Correct name of threadsafe * Correct option name * Undo accidental commit * Note LLVM 10 to 11 format default changes * Update format plugin * Undo clang-format version 11 changes * One more correction * Update supported platforms * Revert whitespace changes * Correct whitespace * Changes from PR#3 * HDFFV-11213 added option to control gcc10 warnings diagnostics * HDFFV-11212 Use the new references correctly in JNI utility and tests * format source * Fix typo * Add new test file * HDFFV-11212 - update test and remove unused arg * Minor non-space formatting changes * Use H5I_INVALID_ID instead of "-1" * source formatting * add missing testfile, update jni function * Undo commit of debug code * remove mislocated file * Fix h5repack test for handling of fapls and id close * Update h5diff test files usage text * HDFFV-11212 add new ref tests for JNI export dataset * src format update * Remove blank line typo * src format typo * long double requires %Lg * Another long double foramt specifer S.B. %Lg * issue with t128bit test * Windows issue with h5dump and type. * Fix review issues * refactor function nesting and fix error checks * format fixes * Remove untested functions and javadoc quiet comments * Restore TRY block. * Change string append errors to memory exception * revert to H5_JNI_FATAL_ERROR - support functions need work * Add assertion error for h5util functions * remove duplicate function * format fix * Revert HD function error handling * Update copyright comments
* Update license url part2 (#333)Larry Knox2021-02-1760-60/+60
| | | | | | * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING file - files not in src or test.
* Modify temporary rpath for testing in java example scripts. (#230)Larry Knox2020-12-294-5/+37
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* CMake: MINGW implies WIN32Michel Zou2020-10-304-4/+4
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* Trim trailing whitespaceQuincey Koziol2020-04-205-5/+5
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* TRILAB-142 Change minimum CMake version to 3.12Allen Byrne2020-02-215-5/+5
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* Small fixes for tools and skip autotools tests for no filterAllen Byrne2020-01-291-20/+24
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* Squashed commit of the token_refactoring branch:Dana Robinson2020-01-164-39/+40
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* HDFFV-11001 need to qualify all by parallel or serial typesAllen Byrne2020-01-154-4/+4
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* HDFFV-11001 Add fine control over testingAllen Byrne2020-01-154-4/+4
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* HDFFV-10995 - add missing importAllen Byrne2020-01-082-0/+2
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* HDFFV-10995 - need to add importAllen Byrne2020-01-082-0/+2
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* HDFFV-10995 adjust testing to tolerate non-US localeAllen Byrne2020-01-082-2/+2
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* small syntax changesAllen Byrne2019-09-194-19/+20
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* Fix compiler warnings with diabled ROS3 and HDFS VFDs.Jacob Smith2019-08-141-11/+3
| | | | | | Fix misuse of [HD]strncpy and [HD]snprintf. Minor formatting changes. Fix test cleanup issue with java groups example.
* Use generator expr to get correct nameAllen Byrne2019-07-224-141/+84
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* Correct java load library name accessAllen Byrne2019-07-184-8/+12
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* HDFFV-10845 fix configure check and PATHsAllen Byrne2019-07-174-4/+4
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* Change how name is retrievedAllen Byrne2019-07-084-4/+8
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* HDFFV-10581 remove special name checkingAllen Byrne2019-07-084-4/+4
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* HDFFV-10703 macro vars need quotesAllen Byrne2019-02-152-5/+4
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* HDFFV-10703 Update CMake commands to latest standardAllen Byrne2019-02-154-12/+12
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* Correct namesAllen Byrne2018-08-301-3/+0
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* Call new functionAllen Byrne2018-08-301-0/+2
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* Fix typoAllen Byrne2018-08-281-1/+1
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* HD prefix and whitespaceAllen Byrne2018-08-281-13/+16
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* Revert testfile FILE changeAllen Byrne2018-08-242-2/+2
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* change FILE pathAllen Byrne2018-08-242-2/+2
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* Add testfiles to data copyAllen Byrne2018-08-231-0/+3
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* Same changes needed for examples as testAllen Byrne2018-08-234-40/+136
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* Update Java util lib, Refactor H5D write VL to match readAllen Byrne2018-06-278-20/+20
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* HDFFV-9739 factor out tests into separate JUnitAllen Byrne2018-05-151-20/+20
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* TRILABS-20 set a compiler name on all project commandsAllen Byrne2018-04-205-5/+5
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