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* Java and fortran cmake changes (#694)Allen Byrne2021-05-291-3/+36
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 convert plugin option to FetchContent, add tests * Fixes for pkcfg files because of plugin option * OESS-98 fix tools test for plugins * Keep doxygen comments under 100 chars long - format hint * Whitespace * HDFFV-11144 - Reclassify CMake messages * HDFFV-11099/11100 added help text * Reworked switch statement to compare string instead * Fix typo * Update CDash mode * Correct name of threadsafe * Correct option name * Undo accidental commit * Note LLVM 10 to 11 format default changes * Update format plugin * Undo clang-format version 11 changes * One more correction * Update supported platforms * Revert whitespace changes * Correct whitespace * Changes from PR#3 * HDFFV-11213 added option to control gcc10 warnings diagnostics * HDFFV-11212 Use the new references correctly in JNI utility and tests * format source * Fix typo * Add new test file * HDFFV-11212 - update test and remove unused arg * Minor non-space formatting changes * Use H5I_INVALID_ID instead of "-1" * source formatting * add missing testfile, update jni function * Undo commit of debug code * remove mislocated file * Fix h5repack test for handling of fapls and id close * Update h5diff test files usage text * HDFFV-11212 add new ref tests for JNI export dataset * src format update * Remove blank line typo * src format typo * long double requires %Lg * Another long double foramt specifer S.B. %Lg * issue with t128bit test * Windows issue with h5dump and type. * Fix review issues * refactor function nesting and fix error checks * format fixes * Remove untested functions and javadoc quiet comments * Restore TRY block. * Change string append errors to memory exception * revert to H5_JNI_FATAL_ERROR - support functions need work * Add assertion error for h5util functions * remove duplicate function * format fix * Revert HD function error handling * Update copyright comments * GH #386 java folder copyright corrections * Whitespace * GH #359 implement and fix tools 1.6 API usage * remove excessive comments * Flip inits to correct ifdef section * rework ifdef to be simpler * format issue * Reformat ifdef inits * remove static attribute * format compliance * Update names * Revert because logic relies on float not being int * Changes noticed from creating merge of #412 * Double underscore change * Correct compiler version variable used * Remove header guard underscores * Whitespace cleanup * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * correct window os name * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * HDFFV-11113 long double in tools * HDFFV-11113 add note * Disable long double tests for now * HDFFV-11228 remove arbitrary CMake warning groups. * Make each flag a string * Some Javadoc warning fixes * Updated javadoc fixes * # WARNING: head commit changed in the meantime HDFFV-11229 Fix long double usage in tools and java Changed h5dump and h5ls to just print 128-bit for long double type. Added test and file for dataset and attributes with all three float types. * Committing clang-format changes * HDFFV-11229 Add release note * HDFFV-11229 windows testfile needed * fix typo * Remove non supported message text * HDFFV-11229 - change ldouble test to check both native and general * HDFFV-11229 add second file compare * HDFFV-11229 fix reference file * HDFFV-11229 autotools check two refs * HDFFV-11229 revert back to removal of NATIVE_LDOUBLE in tools output * Committing clang-format changes * Update release note * Update attribute type of ref file * Change source of ninja for macs * try port instead of brew * Recommended is to use brew. * Undo non long double changes * remove unneeded file * Fix perl and doxygen CMake code * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument * Add stamp files to BYPRODUCTS * Only one copy of file exists * Fix custom cmmand depends targets * Fix fortran custom command DEPENDS * Add LD_LIBRARY_PATH to tests * Add custom target for DEPENDS * Add h5detect conditionaly to generated target DEPENDS * Correct DEPENDS targets * Parallel builds need the mpi compiler for pkgconfig scripts. * install only if MPI build * Fortran target depends * Remove incorrect source attribute * doxygen adjustments * doxygen build updates * Correct version * Correct function version - function has been merged to 1.12 * Correct version string for map functions * Cleanup warnings for tools debug builds * TRILAB-227 - fix indexing for h5diff selections * Correct location of pos to index function call * TRILAB-227 Enable test * Quote subset args * Use MATCHES because of AppleClang * if blocks needed for build modes * Update list of DT platforms * VS2019 correctly displays float values * revert VS2019 change * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * Java reference functions updated enabled fortran in cmake gcc action yaml file java reference test changed to correctly test refs jni reference functions that create ids changed to use jni id logging * Correct BYPRODUCTS argument * Correct more genereated files BYPRODUCTS * BYPRODUCTS must have unique locations * Fix typo Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* develop JNI export references and java updates (#467)Allen Byrne2021-03-121-3/+24
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 convert plugin option to FetchContent, add tests * Fixes for pkcfg files because of plugin option * OESS-98 fix tools test for plugins * Keep doxygen comments under 100 chars long - format hint * Whitespace * HDFFV-11144 - Reclassify CMake messages * HDFFV-11099/11100 added help text * Reworked switch statement to compare string instead * Fix typo * Update CDash mode * Correct name of threadsafe * Correct option name * Undo accidental commit * Note LLVM 10 to 11 format default changes * Update format plugin * Undo clang-format version 11 changes * One more correction * Update supported platforms * Revert whitespace changes * Correct whitespace * Changes from PR#3 * HDFFV-11213 added option to control gcc10 warnings diagnostics * HDFFV-11212 Use the new references correctly in JNI utility and tests * format source * Fix typo * Add new test file * HDFFV-11212 - update test and remove unused arg * Minor non-space formatting changes * Use H5I_INVALID_ID instead of "-1" * source formatting * add missing testfile, update jni function * Undo commit of debug code * remove mislocated file * Fix h5repack test for handling of fapls and id close * Update h5diff test files usage text * HDFFV-11212 add new ref tests for JNI export dataset * src format update * Remove blank line typo * src format typo * long double requires %Lg * Another long double foramt specifer S.B. %Lg * issue with t128bit test * Windows issue with h5dump and type. * Fix review issues * refactor function nesting and fix error checks * format fixes * Remove untested functions and javadoc quiet comments * Restore TRY block. * Change string append errors to memory exception * revert to H5_JNI_FATAL_ERROR - support functions need work * Add assertion error for h5util functions * remove duplicate function * format fix * Revert HD function error handling * Update copyright comments * GH #386 java folder copyright corrections * Whitespace * GH #359 implement and fix tools 1.6 API usage * remove excessive comments * Flip inits to correct ifdef section * rework ifdef to be simpler * format issue * Reformat ifdef inits * remove static attribute * format compliance * Update names * Revert because logic relies on float not being int * Changes noticed from creating merge of #412 * Double underscore change * Correct compiler version variable used * Remove header guard underscores * Whitespace cleanup * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * correct window os name * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Update license url part2 (#333)Larry Knox2021-02-171-1/+1
| | | | | | * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING file - files not in src or test.
* HDFFV-10868 Corrections from reviewAllen Byrne2020-10-291-1/+1
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* HDFFV-10868 - add H5Sselect API java wrappers.Allen Byrne2020-10-271-231/+389
| | | Also added javadoc comments to H5E and H5s constants.
* Update javadoc comments to reduce warnings (#41)Allen Byrne2020-10-161-51/+2489
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* Fix javadoc warningAllen Byrne2020-08-161-0/+4
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* Squash merge of file locking fixesDana Robinson2020-08-031-0/+45
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* HDFFV-11032 fix JNI callAllen Byrne2020-02-211-2/+2
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* Introduce new H5VL _by_value routinesJordan Henderson2020-01-291-1/+3
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* Squashed commit of the token_refactoring branch:Dana Robinson2020-01-161-42/+203
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* Add missing javadoc for new argAllen Byrne2019-12-031-0/+6
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* Update reference files and fix int as stringAllen Byrne2019-12-031-3/+3
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* HDFFV-10876 Update h5dump and h5ls for new ref api.Allen Byrne2019-11-071-5/+326
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* Fix various Java issues when deprecated symbols are disabledJordan Henderson2019-10-101-0/+26
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* Update develop branch version to 1.13.0 after creation of hdf5_1_12Larry Knox2019-09-251-2/+2
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* HDFFV-10887 Implement requested functionsAllen Byrne2019-08-191-4/+3
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* Squashed commit of the following:Larry Knox2019-07-251-0/+10
| | | | | | | | | | | Merge changes from update_merged_S3_HDFS branch into develop. commit d5034315aea88629929ac0c9c59ebfafd5f21a31 Merge: 9c48823 d3fdcd8 Author: Larry Knox <lrknox@hdfgroup.org> Date: Thu Jul 25 08:24:53 2019 -0500 Merge branch 'develop' into update_merged_S3_HDFS
* Snapshot version 1.11 release 5.hdftest2019-05-021-2/+2
| | | | Update version to 1.11.6.
* Add C++, Java, and FORTRAN wrappers and tests for H5Fget_filenoQuincey Koziol2019-04-141-0/+13
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* Snapshot version 1.11 release 4.hdftest2019-04-011-2/+2
| | | | Update version to 1.11.5.
* HDFFV-10703 Update CMake commands to latest standardAllen Byrne2019-02-151-0/+4
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* Java html fix and cmake updateAllen Byrne2019-01-241-7/+5
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* Fix deprecated H5Pget_versionAllen Byrne2019-01-091-28/+0
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* HDFFV-10664 add missing function and check for restrictionAllen Byrne2019-01-041-2/+17
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* HDFFV-10664 minimized dataset headers for java interfaceAllen Byrne2018-12-311-2/+58
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* HDFFV-10664 Add new functions and constants to java interfaceAllen Byrne2018-12-191-52/+106
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* HDFFV-10663 add new function H5Fis_accessibleAllen Byrne2018-12-171-0/+19
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* HDFVIEW-4 Duplicate lineAllen Byrne2018-12-121-1/+0
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* HDFVIEW-4 removed unused functionsAllen Byrne2018-12-121-5/+0
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* HDFVIEW-4 add datatype read to H5A like H5DAllen Byrne2018-12-101-51/+326
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* Commit version changes for additional files for 1.11.3 snapshot release.Larry Knox2018-11-061-2/+2
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* Snapshot version 1.11 release 2.hdftest2018-09-201-2/+2
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* Remove writeVL optionAllen Byrne2018-06-281-2/+3
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* Region reference in compounds need class checkAllen Byrne2018-06-281-3/+4
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* Update Java util lib, Refactor H5D write VL to match readAllen Byrne2018-06-271-17/+8
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* Revert "Merge pull request #1116 in HDFFV/hdf5 from ↵hdftest2018-06-241-2/+2
| | | | | | | ~HDFTEST/hdf5_hft:hdf5_1_10 to develop" This reverts commit e9f476dad47ce593f13dacb77b1cc664d1f24e7b, reversing changes made to 2ff00b1b937ebe36ac6ddf590c16a4c27fc0b053.
* Merge branch 'develop' into hdf5_1_10.syncM. Scot Breitenfeld2018-06-041-5/+143
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| * H5O_info fixes for java and examplesAllen Byrne2018-05-311-5/+143
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* | Merge branch 'develop' into hdf5_1_10.syncM. Scot Breitenfeld2018-05-081-17/+141
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| * Update unimplemented listsAllen Byrne2018-03-261-17/+141
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| * HDFFV-10412 add error on function for JavaAllen Byrne2018-03-131-1/+7
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| * Snapshot version 1.11 release 2hdftest2018-01-051-2/+2
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* | Updated version to 1.10.3-snap0lrknox2018-03-141-2/+2
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* | HDFFV-10412 add complemnt to java error_offAllen Byrne2018-03-131-1/+7
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* | synced with developM. Scot Breitenfeld2018-01-051-0/+62
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| * Snapshot version 1.11 release 1hdftest2018-01-051-2/+2
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| * HDFFV-9724 Corrected files and verified testsAllen Byrne2017-12-281-17/+180
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| * Revert "Merge pull request #826 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to ↵lrknox2017-12-221-180/+17
| | | | | | | | | | | | | | develop" This reverts commit b1223dd653e65e076af92b2dfe236f3704da81c8, reversing changes made to b25f123f5f5e25c1447a6a02861cb7c7265c12f2.
| * HDFFV-9724 Remove VDS file cache functionalityAllen Byrne2017-12-201-28/+29
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