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* Update hdf5_1_12 version after creation of hdf5_1_12_3 branch for release. ↵Larry Knox2023-11-011-1/+1
| | | | | (#3817) branch for release.
* Fix spelling (#3633)Dana Robinson2023-10-041-2/+2
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* Revert the removal of java class H5GroupInfo (#3548)Allen Byrne2023-09-252-0/+189
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* Merge/update CMake, presets,java and tools (#3393)Allen Byrne2023-08-211-1/+4
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* Merges from develop/1.14 (#3118)Allen Byrne2023-06-1510-214/+9
| | | | | | | | | | | | * Fix release action that allows files to be uploaded. Add autotools h5copy help test. Update cmake tools.cmake file for clang-tidy. CMake build is missing H5FDsubfiling.h macros improved for configure output capture. Remove obsolete files * Revert parallel config with TS * Fix doxygen warnings
* Revert the removal of HDF5GroupInfo class and deprecate. (#2637)Allen Byrne2023-03-292-0/+189
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* Update Copyright headers. (#2534)Larry Knox2023-03-1328-28/+0
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* 1.12 Merge HDFGroup#2175 Implement option for using CMake GNUInstallDirs (#2221)Allen Byrne2022-11-041-1/+1
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* 1.12 Fix some Java warnings (#2146)Allen Byrne2022-10-062-2/+2
| | | | | * Fix some Java warnings * Fix accidental change
* 1 12 doxygen merge from 1.10 (#2094)Allen Byrne2022-09-131-54/+132
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* Spelling fixes for codespell (#2038)Dana Robinson2022-08-181-4/+4
| | | | | | | * Spelling fixes for codespell * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Merge UG from 1.10 and add prelim vol section (#1980)Allen Byrne2022-08-0952-1363/+2636
| | | | | | | * Merge UG from 1.10 and add prelim vol section * Spelling fixes * Merge format and autotools javadoc from 1.10
* clang 13 format #1933 (#1939)Allen Byrne2022-07-271-1/+1
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* Revert "1.12 eliminate unnecessary errors in the error stack (#1880)" (#1935)Larry Knox2022-07-262-25/+90
| | | This reverts commit f6997681335f0b5fe2e8904f9108a71c5200fb2d.
* 1.12 eliminate unnecessary errors in the error stack (#1880)Allen Byrne2022-07-182-90/+25
| | | | | | | | | | | * Eliminate unnecessary error output * Fix merge typo * fix format * Fix object address to tokens * Fix conflict
* 1 12 Add utility JNI function for 1.10 style references (#1889)Allen Byrne2022-07-181-0/+23
| | | | | | | | | | | * Add utility JNI function for 1.10 style references * Clarify text * Correct signature * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* 1.12 HDFFV-11310 implement JNI VL support for primitive types (#1856)Allen Byrne2022-07-122-25/+67
| | | | | | | | | | | | | | | * HDFFV-11310 - implement VL read/write using List of Lists * Fix function name typo * Add JIRA issue * Correct note to match change in code. * HDFFV-11318 add VL references as byte arrays * Fix unreleased allocations * Fix format
* Hdf5 1 12 sync (#1794)Allen Byrne2022-06-121-0/+4
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* Add java clang-format (#1672)Allen Byrne2022-04-2257-3401/+3836
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* Update version to 1.12.3-1 after creating hdf5_1_12_2 releaseLarry Knox2022-04-081-2/+2
| | | | | preparation branch. Clean release note entries from RELEASE.txt.
* Normalization of Java with develop (#1607)Dana Robinson2022-04-072-9/+9
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* 1.12 Merge Add tests for H5Ocopy of new object refs (#1339)Allen Byrne2022-01-144-17/+17
| | | | | | | | | | | | | * Add tests for H5Ocopy of new object refs * Correct class name * Skip test because of issue with debug assertions * Update reference file * Fix object examples for new refs and spelling fixs * Fix ref try-catch blocks
* 1.12 Merge Add javadoc to packages - HDFFV-11285 (#1198)Allen Byrne2021-11-196-9/+278
| | | | | * Merge Add javadoc to packages - HDFFV-11285 * Correct list
* Merge Correct java exception declarations #1121 (#1122)Allen Byrne2021-10-211-16/+19
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* Fix javadoc and java warnings (#1010)Allen Byrne2021-09-173-47/+488
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* Update copyright headers with reproduction notice in 5 files (#993) (#1003)Larry Knox2021-09-092-16/+14
| | | | | | | | | | | * Update copyright headers with reproduction notice in 5 files that did not match terms in COPYING file . * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Hdf5 1 12 merge cmake ninja and java refs (#698)Allen Byrne2021-05-291-3/+36
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * Merge CMake and java refs from dev Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Update version to 1.12.2-1.Larry Knox2021-05-181-2/+2
| | | | Update so numbers according to compatibility rules for 1.12.1 release.
* 1 12 - javadoc warning fixes (#507)Allen Byrne2021-03-2512-54/+386
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* 1 12 JNI export references and java updates (#464)Allen Byrne2021-03-125-17/+54
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* 1 12 merge java copyright header changes (#391)Allen Byrne2021-03-0141-347/+230
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return
* Update URL in source file Copyright headers for web copy of COPYINGLarry Knox2021-02-2068-68/+68
| | | | file - files not in src or test.
* 1 12 HDFFV-10865 - merge from dev, HDFArray perf fix (#233)Allen Byrne2020-12-291-184/+120
| | | | | | | | | | | | | | | | | | | | | | | | | * merge updates from develop * remove extension on command * Run autogen before chkmanifest * Update release text files and whitespace cleanup * Update list * OESS-98 Update plugin build option * OESS-98 fix tools test for plugins * Fix conflict * OESS-98 fix hdf5 link target * Update pkgconfig settings with version - #218 * HDFFV-10865 - merge from dev, HDFArray perf fix. * HDFFV-10865 - fix date
* Manual sync with develop (#95)Dana Robinson2020-11-172-6/+55
| | | | Brings all features from develop. Note that RELEASE.txt has not been updated (will be done in a future PR).
* HDFFV-10868 merge from developAllen Byrne2020-10-2844-317/+3813
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* Add github actions and cleanup java whitespaceAllen Byrne2020-05-063-4/+4
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* Update examples and fix version referencesAllen Byrne2020-02-261-1/+1
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* Merge changes from develop mostly cmake 3.12 minimum versionAllen Byrne2020-02-232-2/+2
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* Merge changes from develop for CMake and JavaAllen Byrne2020-02-211-2/+2
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* Introduce new H5VL _by_value routinesJordan Henderson2020-01-291-1/+3
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* Update version to 1.12.1-snap0 for hdf5_1_12 branch.Larry Knox2020-01-281-2/+2
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* Squashed commit of the token_refactoring branch:Dana Robinson2020-01-1913-98/+426
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* HDFFV-10876 Merge from developAllen Byrne2019-12-092-5/+354
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* Revert "Merge branch 'hdf5_1_12' of ↵Jerome Soumagne2019-12-091-3/+0
| | | | | | | https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into hdf5_1_12" This reverts commit 9f9336a5bd541752f472bab4c93da8de89f862cd, reversing changes made to 437a1919e7ba60fe75a33a466d264183a0255319.
* Merged HDFFV-10929_2GB_testing to hdf5_1_12Richard Warren2019-12-061-0/+3
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* Fix various Java issues when deprecated symbols are disabledJordan Henderson2019-10-101-0/+26
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* Set versions in initial hdf5_1_12 revision.hdf5_1_12-initialLarry Knox2019-09-251-2/+2
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* Add back missing java implementationAllen Byrne2019-09-052-12/+14
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* OESS-29 Fix HD prefix in perform and enable test compileAllen Byrne2019-08-271-3/+3
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* Untangle #ifdef mess in ROS3 code.Dana Robinson2019-08-201-1/+1
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