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path: root/java/src/jni/h5dImp.c
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* Refactor JNI translate functions to a recursive switch on datatype (#2232)Allen Byrne2022-11-161-6/+83
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* Update copyright headers (#2184)Larry Knox2022-11-011-1/+0
| | | | | * Updated source file copyright headers to remove "Copyright by the Board of Trustees of the University of Illinois", which is kept in the top-level COPYING file.
* JNI: Improve varlen datatype handling in H5A/H5D read/write functions (#2156)Allen Byrne2022-10-261-458/+89
| | | | | | | | | | | | * Improve JNI VL datatype read/write to handle complex combinations * Implement VL of VL JNI writes and reads * Add Java VLofVL test for attributtes * Changes to address review issues * Fix H5Aread vl blocks
* Fix mostly java warnings, and cpp cast (#2134)Allen Byrne2022-10-031-14/+14
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* Cleanup some warnings in Java JNI code (#2034)jhendersonHDF2022-08-191-47/+67
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* Develop clang 13 format (#1933)Allen Byrne2022-07-261-31/+31
| | | | | * Update format source to clang 13 * More format changes
* Develop HDFFV-11310 (#1811)Allen Byrne2022-07-111-229/+576
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Rework java vl check in read/write. Handle old refs in h5dump * Committing clang-format changes * Java changes allow default VL reads * Fix JNI utility for old refs * HDFFV-11310 - implement vlen read/write for atomic types. * format check fix * Mostly format fixes * More format issues * Two format changes * Use JNI names for sizeof * format change * fix size typo * Change to older method to initialize list * remove unused var * format fix * switch writeVL functions to use datatype instead of java type * Add VL option to generic read/write check * Correct function name typo * Add JIRA issue * Correct note to match change in code. * HDFFV-11318 add VL references as byte arrays * Add release note and format changes * Another format update * Fix unreleased allocations * Fix format * format correction Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Primary change is HDFFV-11212 - new refs and JNI (#372)Allen Byrne2021-02-251-3/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 convert plugin option to FetchContent, add tests * Fixes for pkcfg files because of plugin option * OESS-98 fix tools test for plugins * Keep doxygen comments under 100 chars long - format hint * Whitespace * HDFFV-11144 - Reclassify CMake messages * HDFFV-11099/11100 added help text * Reworked switch statement to compare string instead * Fix typo * Update CDash mode * Correct name of threadsafe * Correct option name * Undo accidental commit * Note LLVM 10 to 11 format default changes * Update format plugin * Undo clang-format version 11 changes * One more correction * Update supported platforms * Revert whitespace changes * Correct whitespace * Changes from PR#3 * HDFFV-11213 added option to control gcc10 warnings diagnostics * HDFFV-11212 Use the new references correctly in JNI utility and tests * format source * Fix typo * Add new test file * HDFFV-11212 - update test and remove unused arg * Minor non-space formatting changes * Use H5I_INVALID_ID instead of "-1" * source formatting * add missing testfile, update jni function * Undo commit of debug code * remove mislocated file * Fix h5repack test for handling of fapls and id close * Update h5diff test files usage text * HDFFV-11212 add new ref tests for JNI export dataset * src format update * Remove blank line typo * src format typo * long double requires %Lg * Another long double foramt specifer S.B. %Lg * issue with t128bit test * Windows issue with h5dump and type. * Fix review issues * refactor function nesting and fix error checks * format fixes * Remove untested functions and javadoc quiet comments * Restore TRY block. * Change string append errors to memory exception * revert to H5_JNI_FATAL_ERROR - support functions need work * Add assertion error for h5util functions * remove duplicate function * format fix * Revert HD function error handling * Update copyright comments
* Update license url part2 (#333)Larry Knox2021-02-171-1/+1
| | | | | | * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING file - files not in src or test.
* Clang-format of source filesAllen Byrne2020-09-301-326/+336
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* Squashed commit of the token_refactoring branch:Dana Robinson2020-01-161-13/+13
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* Address compile warningsAllen Byrne2019-12-061-1/+1
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* Fix compile errors - mostly in jniAllen Byrne2019-12-061-3/+3
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* Fix various Java issues when deprecated symbols are disabledJordan Henderson2019-10-101-5/+17
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* Java formatting of argsAllen Byrne2019-05-301-1/+1
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* Minor fix in h5str_sprintf for NULL region referencesJordan Henderson2019-02-221-1/+1
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* Fixes for JNI updatesJordan Henderson2019-02-121-0/+12
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* Re-write of Java JNI error handlingJordan Henderson2019-02-111-1242/+1324
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* HDFVIEW-4 removed unused functionsAllen Byrne2018-12-121-78/+0
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* HD prefix and whitespaceAllen Byrne2018-08-281-1/+1
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* HDFFV-10536 callback crash fixed by using stack structureAllen Byrne2018-08-171-4/+11
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* Fix ptr arithAllen Byrne2018-06-291-1/+1
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* Update Java util lib, Refactor H5D write VL to match readAllen Byrne2018-06-271-3/+102
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* Fix attribute ReadAllen Byrne2018-06-251-114/+114
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* Remove debug statementsAllen Byrne2018-06-211-5/+0
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* Split/fix utility for vl typesAllen Byrne2018-06-211-2/+13
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* fix whitespaceAllen Byrne2018-06-211-10/+10
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* HDFVIEW compound vlen needed vlen_t sizeAllen Byrne2018-06-201-6/+24
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* Correct if-endif blockAllen Byrne2018-03-011-1/+1
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* Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* Due to HDFVIEW-19 add read VL as string functionAllen Byrne2017-04-121-0/+91
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* Fix URL nameAllen Byrne2017-04-111-1/+1
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* [svn-r30313] HDFFV-9972: unsatisfied link error under debug on Windows.Allen Byrne2016-08-221-94/+97
| | | | | | | | | | Added windows name suffix for debug to CMake cmd_arg for examples and test. Fix issues discovered under debug testing; Create a version of H5Iget_name that correctly returns the name. Rework PIN_JAVA_STRING macro and usage to eliminate possible memory leaks by using if-else instead of mid-routine return. Update example to use new H5Iget_name API. Tested: windows under debug
* [svn-r30213] Add H5Aread_complex for reading arrays and compounds that are ↵Allen Byrne2016-07-201-3/+3
| | | | not VL strings.
* [svn-r30075] Description:Quincey Koziol2016-06-141-0/+27
| | | | | | | | | | Bring object/dataset/group/named datatype features from revise_chunks branch to trunk. Also CMake support for h5format_convert and a bunch of misc. cleanups. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29873] Java add missing APIs.Allen Byrne2016-05-041-53/+80
| | | | | Adjust whitespace in H5.java for exception indentation. Adjust whitespace in JNI for function signature formatting.
* [svn-r29226] HDFFV-9552: merge in java code.Allen Byrne2016-02-291-0/+1758
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