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* sync cmake and examples changes (#3438)Allen Byrne2023-08-281-1/+1
| | | | | | | | | | | * sync cmake and examples changes * Add java lib changes * Update jave log files * Update java logger version * More logger version changes
* Various merges from develop (#3135)Allen Byrne2023-06-195-7/+11
| | | | | | | | | * Merges from develop/1.14 * Fix doxygen warnings * Fix spelling * Fix doxygen ref * Add braces * Fix format * Remove unused file
* Gather latest CMake changes from develop (#2609)Allen Byrne2023-03-201-1/+1
| | | | Add HDF5_SRC_INCLUDE_DIRS variable cleanup cmake comments and documentation
* Update copyright headers. (#2527)Larry Knox2023-03-1016-16/+0
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* 1.10 Fix some Java warnings (#2147)Allen Byrne2022-10-063-183/+179
| | | | | * Fix some Java warnings * fix formatting
* Cleanup some warnings in Java JNI code (#2034) (#2099)jhendersonHDF2022-09-164-108/+146
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* Update java code with doxygen tags, add menu files. (#1972)Allen Byrne2022-08-092-7/+7
| | | | | | | | | | | | | | | | | * Update java code with doxygen tags, add menu files. * Add -Xdoclint:none to autotools javadoc command * Committing clang-format changes * Add fortran RM list descriptions * delete empty file * doc tag location changes * Spelling corrections Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* 1.10 clang 13 format #1933 (#1940)Allen Byrne2022-07-2926-341/+341
| | | | | * clang 13 format #1933 * Correct workflow
* 1 10 Add utility JNI function for 1.10 style references (#1890)Allen Byrne2022-07-182-0/+68
| | | | | | | | | | | * Add utility JNI function for 1.10 style references * Clarify text * Correct signature * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* 1 10 HDFFV-11310 implement JNI VL support for primitive types (#1858)Allen Byrne2022-07-126-464/+1425
| | | | | | | | | | | | | | | | | | | | | | | | | * HDFFV-11310 - implement vlen read/write for atomic types. * HDFFV-11310 - VL read/write function for primitive types * Add read/write VL option * fix function name typo * remove debugging prints * Remove more debugging code * Correct note to match change in code. * HDFFV-11318 add VL references as byte arrays * Fix unreleased allocations, fix debug * Fix format * Fix formatting * Correct typo
* Reinstate java API removed in 1.10.8 (#1697)Allen Byrne2022-04-292-0/+76
| | | | | | | * Revert java API removal with JNI private function * Fix name typo * Correct format
* Hdf5 1 10 merges (#1633)jhendersonHDF2022-04-141-16/+3
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* 1.10 Merge Add missing dataset reference text #1081 (#1083)Allen Byrne2021-10-092-13/+46
| | | | | * Merge Add missing dataset reference text #1081 * Only print name if not printing data
* 1.10 merge clang tidy of examples and hl (#966)Allen Byrne2021-08-251-2/+1
| | | | | | | * Merge of clang tidy of examples and hl from 1.12 * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Hdf5 1 10 merge of printf specifiers and VS2015 min changes (#612)Allen Byrne2021-04-301-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Hdf5 merge issue 487 v110 (#533)Larry Knox2021-04-011-2/+8
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Cleans up a couple of MSVC warnings in testhdf5 (#475) * Fixes a few testhdf5 warnings raised in Visual Studio Visual Studio is grumpier about treating pointers like integers than gcc. * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Fix typos and grammar errors. (#476) * Suppresses the tcheck_version test's abort dialog on Windows (#477) * Suppresses the tcheck_version test's abort dialog on Windows Windows raises a modal abort/retry/ignore dialog box when CRT calls abort(). This change installs a report hook that suppresses the dialog so that the CMake tests don't time out waiting for a nonexistent user to click a dialog box. * Committing clang-format changes * Removes __cdecl from callback Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Committing clang-format changes Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org>
* 1 10 - Mostly all javadoc warning fixes (#508)Allen Byrne2021-03-251-1/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* 1 10 Fix java data export functions (#450)Allen Byrne2021-03-104-33/+193
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source
* 1 10 Merges from develop (#424)Allen Byrne2021-03-0436-413/+321
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file
* 1 10 merge java copyright header changes (#392)Allen Byrne2021-03-0149-49/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder
* Hdf5 1 10 update license url part2 (#404)Larry Knox2021-03-0165-65/+65
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * close #195. (#196) * Update HDF5PluginMacros.cmake * Update HDF5PluginMacros.cmake * Modify temporary rpath for testing in java example scripts. (#230) * Fix undefined left shifting of negative numbers (#338) Undefined Bahavior Sanitizer errored here about left shifting negative numbers. * Update license url (#332) * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING file - src and test directories. * Update license url part2 (#333) * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING file - files not in src or test. * Update URL in source file Copyright headers for web. Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org> Co-authored-by: Sean McBride <sean@rogue-research.com>
* 1 10 Whitespace changes after clang-format run (#287)Allen Byrne2021-01-291-2/+2
| | | | | | | | | * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes
* HDFFV-10868 merge java changes from developAllen Byrne2020-11-033-4/+812
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* OESS-98 add CMake option to build plugins project within hdf5Allen Byrne2020-10-161-1/+1
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* Source formattedAllen Byrne2020-10-0158-6178/+6861
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* Merge of clang-format changes from developAllen Byrne2020-09-303-8/+15
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* Brings file locking changes from developDana Robinson2020-08-142-0/+99
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* Correct arg referencesAllen Byrne2020-06-221-3/+3
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* HDFFV-11111 correct ifdef logicAllen Byrne2020-06-181-2/+2
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* HDFFV-11111 add unimplemented errors in JNIAllen Byrne2020-06-182-0/+31
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* Add github actions file and cleanup javaAllen Byrne2020-05-062-2/+2
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* TRILAB-192 - merge changes from developAllen Byrne2020-04-071-3/+1
| | | | Single source, config files, for warnings for both autotools and CMake. Update CMake libraries, tools, tests to use correct flags.
* Correct cb object nameAllen Byrne2020-03-301-1/+1
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* TRILAB-192 merging warnings changes from developAllen Byrne2020-03-305-39/+23
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* Merge CMake and tools changes from developAllen Byrne2020-02-2723-536/+503
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* Add missing include folderAllen Byrne2019-12-101-1/+1
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* HDFFV-10903 merge updated changesAllen Byrne2019-09-172-6/+14
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* Merge S3 code from develop to 1.10Allen Byrne2019-09-134-0/+378
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* HDFFV-10887 merge from developAllen Byrne2019-08-202-0/+87
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* HDFFV-10845, 10529 and CMake changes from developAllen Byrne2019-07-241-2/+2
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* HDFFV-10805 Merge SHARED ONLY option from developAllen Byrne2019-06-201-1/+1
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* Updates from developAllen Byrne2019-06-101-1/+1
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* Update cmake macros and java arg formatAllen Byrne2019-05-316-79/+79
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* Fix Java JUnit-TestH5P failure on 32-bit archJordan Henderson2019-04-301-1/+1
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* Minor fix in h5str_sprintf for NULL region referencesJordan Henderson2019-02-223-3/+3
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* Re-write of Java JNI error handlingJordan Henderson2019-02-1449-16017/+18384
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* Fix deprecated H5Pget_versionAllen Byrne2019-01-091-1/+4
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* HDFFV-10674, 10664, 10674Allen Byrne2019-01-074-0/+150
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* HDFFV-10669 merge from developAllen Byrne2018-12-311-1/+1
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* Merge CMake changes from developAllen Byrne2018-12-201-1/+3
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