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* Replace H5E_ATOM major error category with H5E_ID (#121)Dana Robinson2020-11-302-6/+6
| | | | | | | | | | * Renames H5I_ATOM to H5I_ID, among other related changes * Java has been updated. * Fortran is failing on my VM, even though I don't touch that. * Adds a RELEASE.txt note for H5E_ATOM to H5E_ID changes * Fixes typos in comments
* Basic alignment with async branch (#115)Quincey Koziol2020-11-231-2/+2
| | | | | | | * Basic alignment with async branch - trivial changes to reduce clutter in overall diff. * Update minor error code to reflect change within library * Update the error output to match library
* HDFFV-10868 Corrections from reviewAllen Byrne2020-10-291-21/+21
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* HDFFV-10868 - add H5Sselect API java wrappers.Allen Byrne2020-10-273-4/+812
| | | Also added javadoc comments to H5E and H5s constants.
* Clang-format of source filesAllen Byrne2020-09-3060-6508/+7220
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* Fix jni with %Lg instead of %LfAllen Byrne2020-09-291-3/+1
| | | Fix warnings due to improper formed define tag in h5diff
* Pre-format fixes for warnings as errorsAllen Byrne2020-09-291-0/+2
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* OESS-98 merge with clang-format changesAllen Byrne2020-09-251-1/+1
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* File changes to affect formattingAllen Byrne2020-09-041-6/+6
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* CMake and script changes for clang-formatAllen Byrne2020-09-041-0/+8
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* Squash merge of file locking fixesDana Robinson2020-08-032-0/+99
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* Trim trailing whitespaceQuincey Koziol2020-04-202-2/+2
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* TRILAB-192 add c++ and fortran warnings build systems one fileAllen Byrne2020-04-051-3/+1
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* Fix Werror issues in JNI and toolsAllen Byrne2020-03-244-8/+12
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* TRILAB-192 fix JNI shadow warningAllen Byrne2020-03-244-4/+0
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* TRILAB-192 restrict extensive warnings to librariesAllen Byrne2020-03-241-0/+3
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* Update examples and fix old version references.Allen Byrne2020-02-261-35/+21
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* Fix Fortran macro use and jni commentAllen Byrne2020-02-252-2/+4
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* TRILAB-142 Change minimum CMake version to 3.12Allen Byrne2020-02-211-1/+1
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* Fix always true issue because member is not dynamically allocatedAllen Byrne2020-02-211-7/+7
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* Merge pull request #2318 in HDFFV/hdf5 from ↵David Young2020-01-293-30/+29
|\ | | | | | | | | | | | | ~DYOUNG/werror:reduce-werror-diffs-1 to develop * commit 'fa1b2f6ef35c459c9f74ead885c119ae7f61c056': Reduce differences between my -Werror branch and `develop`:
| * Reduce differences between my -Werror branch and `develop`:David Young2020-01-293-30/+29
| | | | | | | | | | | | | | | | Rename index -> idx, fileno -> fnumber, fileno -> fno to avoid GCC shadowed declaration warnings about index(3). Convert #pragma GCC diagnostic push/pop/ignored to the HDF5 library's H5_GCC_DIAG_OFF()/H5_GCC_DIAG_ON() macros.
* | Merge pull request #2320 in HDFFV/hdf5 from ↵David Young2020-01-291-8/+8
|\ \ | | | | | | | | | | | | | | | | | | ~DYOUNG/werror:reduce-werror-diffs-2 to develop * commit 'a5f236e83bdd29e660a55c5577a69a3809605cda': Reduce casts of HDcalloc()/HDmalloc() that -Wc++-compat required.
| * | Reduce casts of HDcalloc()/HDmalloc() that -Wc++-compat required.David Young2020-01-291-8/+8
| |/ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Reduce gratuitous casts---e.g., (size_t)1. Use the right format string for a pointer. In the H5C sanity checks, change a "size increase" variable from ssize_t (too narrow) to int64_t (wide enough). Parenthesize every appearance of `storage` in the macro `H5D_CHUNK_STORAGE_INDEX_CHK(storage)` so that you can pass in an expression like &sc and it works properly. Disallow re-assignment of the `dset` parameter to H5D__chunk_init() because it helped assure me that it's safe to replace the repeating expression `&dset->shared->layout.storage.u.chunk` with `sc` throughout. Replace lengthy expressions such as `&dset->shared->layout.storage.u.chunk` with `sc` throughout several functions in H5Dchunk.c ISTR that the compiler warned that `sc` was declared but unused in a couple of functions, and then I found that `sc` could be used in many places. Maybe the disused `sc` appeared because a bunch of code was copied and pasted, I don't know. Anyway, it's a lot tighter code now that I use `sc`. In H5D__chunk_update_old_edge_chunks() and H5D__chunk_delete() I actually expand `sc` and another temporary variable, `pline`, because they're used only in !defined(NDEBUG) code. This squashes unused-variable warnings in the defined(NDEBUG) configuration. Don't drop the `volatile` qualification with a cast in tools/src/h5import/h5import.c.
* | Merge pull request #2321 in HDFFV/hdf5 from ↵David Young2020-01-291-2/+8
|\ \ | | | | | | | | | | | | | | | | | | ~DYOUNG/werror:reduce-werror-diffs-3 to develop * commit 'f19e06b59ee53f17465a7b5974c25c3245a40d9a': testpar/t_2Gio.c: Fix a typo that I think was introduced by a previous warnings PR. An array element was assigned to itself---shape[2]Â =Â shape[2];---instead of being assigned to chunk[2].
| * | testpar/t_2Gio.c: Fix a typo that I think was introduced by aDavid Young2020-01-291-2/+8
| |/ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | previous warnings PR. An array element was assigned to itself---shape[2]Â =Â shape[2];---instead of being assigned to chunk[2]. fortran/src/H5Pf.c: move conditional compilation controlled by H5_NO_DEPRECATED_SYMBOLS outside of a function for readability. fortran/src/H5match_types.c: put a variable's declaration under the same conditional compilation (H5_FORTRAN_HAVE_C_LONG_DOUBLE) as its use. For now, skip compilation of some unused debug dump routines in the JNI. While I'm in the JNI, delete a set-but-unused variable. src/H5Z.c: condition a variable declaration on H5_NO_DEPRECATED_SYMBOLS so that it's not declared but unused or vice versa. test/cache_common.h: add an #include in to get some symbols we need to avoid implicit declaration warnings. test/dsets.c: use a more conventional conditional-compilation syntax. test/dt_arith.c, test/fillval.c: initialize a bunch of uninitialized variables before use. test/vfd.c: pass the expected type of `void **` to posix_memalign(3) instead of `int **`. testpar/t_bigio.c: explicitly compare with 0 instead of using ! when "equal to 0?" is the question not "is false?" Repair some indentation while I'm here. testpar/testpar.h: repair misaligned line-continuation backslashes in a macro that probably should be a function so that we don't have to fiddle with the line continuation to begin with. tools/src/h5repack/h5repack_main.c: fix some compiler fussing about enums. tools/test/perform/pio_engine.c: the compiler fusses if you cast a function call returning double directly to off_t. It's ok if you cast a variable that's a double to off_t, however. Write and use a new function, sqrto(), to avoid the cast warnings.
* | Introduce new H5VL _by_value routinesJordan Henderson2020-01-292-8/+74
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* Squashed commit of the token_refactoring branch:Dana Robinson2020-01-1626-747/+1000
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* HDFFV-10976,-10980 Init obj_type before calling H5Rget_obj_type3Allen Byrne2019-12-202-2/+2
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* Fix java include, h5watch and remove clang tool.Allen Byrne2019-12-101-1/+1
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* Address compile warningsAllen Byrne2019-12-065-31/+30
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* Fix compile errors - mostly in jniAllen Byrne2019-12-063-32/+73
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* Update reference files and fix int as stringAllen Byrne2019-12-032-9/+9
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* HDFFV-10876 Update h5dump and h5ls for new ref api.Allen Byrne2019-11-0710-125/+926
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* Fix various Java issues when deprecated symbols are disabledJordan Henderson2019-10-106-12/+90
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* Update versioning to next major versionAllen Byrne2019-09-251-0/+2
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* HDFFV-10903 - fix VFD constants in JNIAllen Byrne2019-09-171-2/+14
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* revert as CHECK will first check for exceptionAllen Byrne2019-09-101-6/+6
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* Clear exception for getting JNI string to clear the exceptionAllen Byrne2019-09-101-6/+6
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* Add statement for label if code unimplementedAllen Byrne2019-09-051-0/+2
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* Fix unused varAllen Byrne2019-09-051-2/+6
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* Correct label and var namesAllen Byrne2019-09-051-14/+14
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* Add back missing java implementationAllen Byrne2019-09-052-0/+364
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* HDFFV-10887 Implement requested functionsAllen Byrne2019-08-192-0/+87
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* Squashed commit of the following:Larry Knox2019-07-251-0/+4
| | | | | | | | | | | Merge changes from update_merged_S3_HDFS branch into develop. commit d5034315aea88629929ac0c9c59ebfafd5f21a31 Merge: 9c48823 d3fdcd8 Author: Larry Knox <lrknox@hdfgroup.org> Date: Thu Jul 25 08:24:53 2019 -0500 Merge branch 'develop' into update_merged_S3_HDFS
* Move before null checkAllen Byrne2019-07-081-2/+2
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* HDFFV-10805 Add option to only build shared targetsAllen Byrne2019-06-181-1/+1
| | | | | HDFFV-10805 Add ONLY_SHARED_LIBS option and prefer shared over static HDFFV-10803 Update FindSZIP.cmake find module Remove unneeded modules and update java modules
* Added H5Fdelete call and VOL support (but no VFD/native implementation).Dana Robinson2019-06-111-0/+2
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* Merge pull request #1715 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-06-0510-83/+83
|\ | | | | | | | | | | | | * commit '1ecce0e9bbc07cb3eb6f6bc1fca9d42c9e9c8176': Fix minor issues Update macro Java formatting of args
| * Fix minor issuesAllen Byrne2019-06-031-1/+1
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