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* 1 12 merge java copyright header changes (#391)Allen Byrne2021-03-0198-768/+631
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return
* Update URL in source file Copyright headers for web copy of COPYINGLarry Knox2021-02-20136-136/+136
| | | | file - files not in src or test.
* 1 12 HDFFV-10865 - merge from dev, HDFArray perf fix (#233)Allen Byrne2020-12-291-184/+120
| | | | | | | | | | | | | | | | | | | | | | | | | * merge updates from develop * remove extension on command * Run autogen before chkmanifest * Update release text files and whitespace cleanup * Update list * OESS-98 Update plugin build option * OESS-98 fix tools test for plugins * Fix conflict * OESS-98 fix hdf5 link target * Update pkgconfig settings with version - #218 * HDFFV-10865 - merge from dev, HDFArray perf fix. * HDFFV-10865 - fix date
* Basic alignment with async branch (#115) (#137)Quincey Koziol2020-11-301-2/+2
| | | | | | | * Basic alignment with async branch - trivial changes to reduce clutter in overall diff. * Update minor error code to reflect change within library * Update the error output to match library
* Manual sync with develop (#95)Dana Robinson2020-11-175-10/+151
| | | | Brings all features from develop. Note that RELEASE.txt has not been updated (will be done in a future PR).
* HDFFV-10868 Corrections from reviewAllen Byrne2020-10-291-21/+21
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* HDFFV-10868 merge from developAllen Byrne2020-10-2847-321/+4629
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* OESS-98 add CMake option to build plugins project within hdf5Allen Byrne2020-10-161-1/+1
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* Source formattedAllen Byrne2020-10-0160-6484/+7196
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* warning format fixes and define name from developAllen Byrne2020-09-301-1/+1
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* Add clang-format changes from develop.Allen Byrne2020-09-282-6/+14
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* Whitespace cleanupAllen Byrne2020-05-121-1/+1
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* Add github actions and cleanup java whitespaceAllen Byrne2020-05-065-6/+6
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* TRILAB-192 - merge changes from developAllen Byrne2020-04-071-3/+1
| | | | Single source, config files, for warnings for both autotools and CMake. Update CMake libraries, tools, tests to use correct flags.
* TRILAB-192 merging warnings changes from developAllen Byrne2020-03-305-12/+15
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* Update examples and fix version referencesAllen Byrne2020-02-262-36/+22
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* Fix Fortran macro use and jni commentAllen Byrne2020-02-252-2/+4
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* Merge changes from develop mostly cmake 3.12 minimum versionAllen Byrne2020-02-234-4/+4
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* Merge changes from develop for CMake and JavaAllen Byrne2020-02-212-9/+9
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* Squashed commit of the following:David Young2020-01-315-40/+45
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | commit ff7a9a34de2fcd78f5d32a1532f3d0e224b20d94 Author: Kimmy Mu <kmu@hdfgroup.org> Date: Wed Jan 29 14:12:18 2020 -0600 Merge pull request #2324 in HDFFV/hdf5 from ~KMU/hdf5:hdf5_1_12 to hdf5_1_12 * commit '781fa57f6ee816e037dd12fff02d37ff7ec9c2b1': pick up missing piece from merge Merge pull request #2311 in HDFFV/hdf5 from ~KMU/hdf5:misc to develop remove redundent definition Merge pull request #2311 in HDFFV/hdf5 from ~KMU/hdf5:misc to develop Merge pull request #2311 in HDFFV/hdf5 from ~KMU/hdf5:misc to develop Merge pull request #2315 in HDFFV/hdf5 from ~KMU/hdf5:develop to develop missing prototype warning prototype issue Merge pull request #2306 in HDFFV/hdf5 from ~KMU/hdf5:develop to develop Merge pull request #2300 in HDFFV/hdf5 from ~KMU/hdf5:squashed_cast to develop Merge pull request #2291 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/uninitialized to develop Merge pull request #2295 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/float to develop Merge pull request #2292 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/prototype to develop Merge pull request #2094 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/unused to develop commit 9f3d808c05d2a3b308f32c958c6671fcac0a432c Author: David Young <dyoung@hdfgroup.org> Date: Wed Jan 29 11:43:55 2020 -0600 testpar/t_2Gio.c: Fix a typo that I think was introduced by a previous warnings PR. An array element was assigned to itself---shape[2]Â =Â shape[2];---instead of being assigned to chunk[2]. fortran/src/H5Pf.c: move conditional compilation controlled by H5_NO_DEPRECATED_SYMBOLS outside of a function for readability. fortran/src/H5match_types.c: put a variable's declaration under the same conditional compilation (H5_FORTRAN_HAVE_C_LONG_DOUBLE) as its use. For now, skip compilation of some unused debug dump routines in the JNI. While I'm in the JNI, delete a set-but-unused variable. src/H5Z.c: condition a variable declaration on H5_NO_DEPRECATED_SYMBOLS so that it's not declared but unused or vice versa. test/cache_common.h: add an #include in to get some symbols we need to avoid implicit declaration warnings. test/dsets.c: use a more conventional conditional-compilation syntax. test/dt_arith.c, test/fillval.c: initialize a bunch of uninitialized variables before use. test/vfd.c: pass the expected type of `void **` to posix_memalign(3) instead of `int **`. testpar/t_bigio.c: explicitly compare with 0 instead of using ! when "equal to 0?" is the question not "is false?" Repair some indentation while I'm here. testpar/testpar.h: repair misaligned line-continuation backslashes in a macro that probably should be a function so that we don't have to fiddle with the line continuation to begin with. tools/src/h5repack/h5repack_main.c: fix some compiler fussing about enums. tools/test/perform/pio_engine.c: the compiler fusses if you cast a function call returning double directly to off_t. It's ok if you cast a variable that's a double to off_t, however. Write and use a new function, sqrto(), to avoid the cast warnings. commit 43a4b80b21c0329fbc1f9a0e2854795189f0bb50 Author: David Young <dyoung@hdfgroup.org> Date: Wed Jan 29 10:47:30 2020 -0600 Reduce casts of HDcalloc()/HDmalloc() that -Wc++-compat required. Reduce gratuitous casts---e.g., (size_t)1. Use the right format string for a pointer. In the H5C sanity checks, change a "size increase" variable from ssize_t (too narrow) to int64_t (wide enough). Parenthesize every appearance of `storage` in the macro `H5D_CHUNK_STORAGE_INDEX_CHK(storage)` so that you can pass in an expression like &sc and it works properly. Disallow re-assignment of the `dset` parameter to H5D__chunk_init() because it helped assure me that it's safe to replace the repeating expression `&dset->shared->layout.storage.u.chunk` with `sc` throughout. Replace lengthy expressions such as `&dset->shared->layout.storage.u.chunk` with `sc` throughout several functions in H5Dchunk.c ISTR that the compiler warned that `sc` was declared but unused in a couple of functions, and then I found that `sc` could be used in many places. Maybe the disused `sc` appeared because a bunch of code was copied and pasted, I don't know. Anyway, it's a lot tighter code now that I use `sc`. In H5D__chunk_update_old_edge_chunks() and H5D__chunk_delete() I actually expand `sc` and another temporary variable, `pline`, because they're used only in !defined(NDEBUG) code. This squashes unused-variable warnings in the defined(NDEBUG) configuration. Don't drop the `volatile` qualification with a cast in tools/src/h5import/h5import.c. commit 035bfa0769a4012881fc659b673bacf44d146537 Author: David Young <dyoung@hdfgroup.org> Date: Tue Jan 28 20:35:28 2020 -0600 Reduce differences between my -Werror branch and `develop`: Rename index -> idx, fileno -> fnumber, fileno -> fno to avoid GCC shadowed declaration warnings about index(3). Convert #pragma GCC diagnostic push/pop/ignored to the HDF5 library's H5_GCC_DIAG_OFF()/H5_GCC_DIAG_ON() macros.
* Introduce new H5VL _by_value routinesJordan Henderson2020-01-293-9/+77
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* Update version to 1.12.1-snap0 for hdf5_1_12 branch.Larry Knox2020-01-281-2/+2
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* Squashed commit of the token_refactoring branch:Dana Robinson2020-01-1940-847/+1430
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* HDFFV-10976,-10980 h5dump, h5ls, h5diff use new ref APIsAllen Byrne2019-12-202-2/+2
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* Add missing include folderAllen Byrne2019-12-101-1/+1
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* HDFFV-10876 Merge from developAllen Byrne2019-12-0915-168/+1358
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* Revert "Merge branch 'hdf5_1_12' of ↵Jerome Soumagne2019-12-092-5/+0
| | | | | | | https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into hdf5_1_12" This reverts commit 9f9336a5bd541752f472bab4c93da8de89f862cd, reversing changes made to 437a1919e7ba60fe75a33a466d264183a0255319.
* Merged HDFFV-10929_2GB_testing to hdf5_1_12Richard Warren2019-12-062-0/+5
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* Fix various Java issues when deprecated symbols are disabledJordan Henderson2019-10-107-12/+116
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* Set versions in initial hdf5_1_12 revision.hdf5_1_12-initialLarry Knox2019-09-251-2/+2
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* HDFFV-10903 - fix VFD constants in JNIAllen Byrne2019-09-171-2/+14
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* revert as CHECK will first check for exceptionAllen Byrne2019-09-101-6/+6
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* Clear exception for getting JNI string to clear the exceptionAllen Byrne2019-09-101-6/+6
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* Add statement for label if code unimplementedAllen Byrne2019-09-051-0/+2
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* Fix unused varAllen Byrne2019-09-051-2/+6
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* Correct label and var namesAllen Byrne2019-09-051-14/+14
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* Add back missing java implementationAllen Byrne2019-09-054-12/+378
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* OESS-29 Fix HD prefix in perform and enable test compileAllen Byrne2019-08-271-3/+3
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* Untangle #ifdef mess in ROS3 code.Dana Robinson2019-08-201-1/+1
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* HDFFV-10887 Implement requested functionsAllen Byrne2019-08-193-4/+90
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* Squashed commit of the following:Larry Knox2019-07-257-0/+247
| | | | | | | | | | | Merge changes from update_merged_S3_HDFS branch into develop. commit d5034315aea88629929ac0c9c59ebfafd5f21a31 Merge: 9c48823 d3fdcd8 Author: Larry Knox <lrknox@hdfgroup.org> Date: Thu Jul 25 08:24:53 2019 -0500 Merge branch 'develop' into update_merged_S3_HDFS
* Move before null checkAllen Byrne2019-07-081-2/+2
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* HDFFV-10805 Add option to only build shared targetsAllen Byrne2019-06-181-1/+1
| | | | | HDFFV-10805 Add ONLY_SHARED_LIBS option and prefer shared over static HDFFV-10803 Update FindSZIP.cmake find module Remove unneeded modules and update java modules
* Added H5Fdelete call and VOL support (but no VFD/native implementation).Dana Robinson2019-06-113-1/+9
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* Merge pull request #1715 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-06-0510-83/+83
|\ | | | | | | | | | | | | * commit '1ecce0e9bbc07cb3eb6f6bc1fca9d42c9e9c8176': Fix minor issues Update macro Java formatting of args
| * Fix minor issuesAllen Byrne2019-06-031-1/+1
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| * Java formatting of argsAllen Byrne2019-05-309-82/+82
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* | Added a VOL initialization property list type.Dana Robinson2019-06-052-0/+10
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* Snapshot version 1.11 release 5.hdftest2019-05-021-2/+2
| | | | Update version to 1.11.6.
* Fix Java JUnit-TestH5P failure on 32-bit archJordan Henderson2019-04-301-1/+1
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