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* Updated version and cleaned release note entries from RELEASE.txt. (#3560)Larry Knox2023-09-201-2/+2
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* Sync CMake and doxygen changes with develop (#3543)Allen Byrne2023-09-191-1/+1
| | | | | * Sync CMake and doxygen changes from develop * Add missing images
* Correct dimensions in java test (#3483)Allen Byrne2023-09-012-2/+2
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* Sync Java changes - particularly VL handling (#3442)Allen Byrne2023-08-294-61/+1207
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* sync cmake and examples changes (#3438)Allen Byrne2023-08-282-4/+4
| | | | | | | | | | | * sync cmake and examples changes * Add java lib changes * Update jave log files * Update java logger version * More logger version changes
* Update HDF5 version after 1.10.10 release. (#2681)Larry Knox2023-04-071-1/+1
| | | | | | | | * Update HDF5 version after 1.10.10 release. Update so numbers to match 1.10.10 release so numbers. Update HISTORY-1_10.txt. Clean RELEASE.txt entries. * Missed one version change.
* Merge CMake cleanup process from develop (#2622)Allen Byrne2023-03-231-13/+30
| | | | | * Merge CMake cleanup process from develop * Update test script files
* [1.10 Merge] Add Developer build mode to CMake (#2617)jhendersonHDF2023-03-201-1/+1
| | | | | | | | | | | | | | | | | | | | | | * Add Developer build mode to CMake (#1659) * Add Developer build mode to CMake * Set a few CMake variables for Developer build modes * Refactor enabling of debug and developer-level compile definitions * Convert cache debugging macros to normal ifdef style Normal ifdef-style instead of if-style allows build system to define macros without warning about redefining macros with different values (0 vs. 1) * Add HDF5 Developer compile definitions to testing files * Temporarily disable -fanalyzer flag for GCC 12+ Developer builds * Fix Java tests for Developer build modes (#2079) * Minor adjustment of Developer build mode changes for 1.10 branch
* 1.10 Fix some Java warnings (#2147)Allen Byrne2022-10-062-0/+7
| | | | | * Fix some Java warnings * fix formatting
* 1.10 clang 13 format #1933 (#1940)Allen Byrne2022-07-298-30/+31
| | | | | * clang 13 format #1933 * Correct workflow
* 1 10 HDFFV-11310 implement JNI VL support for primitive types (#1858)Allen Byrne2022-07-126-31/+930
| | | | | | | | | | | | | | | | | | | | | | | | | * HDFFV-11310 - implement vlen read/write for atomic types. * HDFFV-11310 - VL read/write function for primitive types * Add read/write VL option * fix function name typo * remove debugging prints * Remove more debugging code * Correct note to match change in code. * HDFFV-11318 add VL references as byte arrays * Fix unreleased allocations, fix debug * Fix format * Fix formatting * Correct typo
* Hdf5 1 10 sync (#1795)Allen Byrne2022-06-091-11/+16
| | | | | * Branch sync updates and spelling * Revert format of getenv
* Update version to 1.10.10-1 (#1783)Larry Knox2022-05-191-1/+1
| | | | Update so numbers to match 1.10.9 release. Clear 1.10.9 entries from RELEASE.txt.
* Add java to format source (#1690)Allen Byrne2022-04-2642-4211/+6618
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* Merge various cleanup java test, test files, comments (#1364)Allen Byrne2022-01-193-11/+11
| | | Plus some spelling corrections
* Merge Update the java slf4j logging jars to latest 1.7.33 (#1371)Allen Byrne2022-01-142-4/+4
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* Update version to 1.10.9-1. (#1069)Larry Knox2021-10-031-2/+2
| | | Clear 1.10.8 entries out of RELEASE.txt.
* Fix javadoc and java warnings (#1011)Allen Byrne2021-09-161-1/+1
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* Correct dataset close in java test #919 (#921)Allen Byrne2021-08-191-1/+1
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* 1 10 Merge of long double fix and compiler flags (#531)Allen Byrne2021-04-198-2/+907
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* 1 10 - Mostly all javadoc warning fixes (#508)Allen Byrne2021-03-251-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* 1 10 Fix java data export functions (#450)Allen Byrne2021-03-1033-348/+502
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source
* 1 10 merge java copyright header changes (#392)Allen Byrne2021-03-0141-41/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder
* Hdf5 1 10 update license url part2 (#404)Larry Knox2021-03-0141-41/+41
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * close #195. (#196) * Update HDF5PluginMacros.cmake * Update HDF5PluginMacros.cmake * Modify temporary rpath for testing in java example scripts. (#230) * Fix undefined left shifting of negative numbers (#338) Undefined Bahavior Sanitizer errored here about left shifting negative numbers. * Update license url (#332) * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING file - src and test directories. * Update license url part2 (#333) * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING file - files not in src or test. * Update URL in source file Copyright headers for web. Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org> Co-authored-by: Sean McBride <sean@rogue-research.com>
* Correct TARGET variable and CMake config file locationAllen Byrne2020-11-121-1/+1
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* HDFFV-10868 merge java changes from developAllen Byrne2020-11-032-1/+153
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* Convert testEquals to test containsAllen Byrne2020-10-051-2/+2
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* Updated HDF5 1.10 support branch version number to 1.10.8-0Larry Knox2020-08-191-2/+2
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* Brings file locking changes from developDana Robinson2020-08-142-1/+34
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* Brings HDFFV-11027 H5S_NO_CLASS fix to 1.10 from developDana Robinson2020-08-111-1/+1
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* Change load path in libhdf5_java.dylib to unversioned libhdf5.dylib for ↵Larry Knox2020-07-071-1/+1
| | | | junit tests on Macs.
* Merge pull request #2667 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developLarry Knox2020-07-061-6/+2
| | | | | * commit '32c483cb86031962a09ecdb49dcb331d28dddee9': Copy lib files for junit.sh to temporary subdirectory of <build directory>/java/test instead of to the prefix/lib directory. Fix for HDFFV-11063.
* Merge pull request #2670 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developLarry Knox2020-07-061-0/+8
| | | | | * commit 'fc69de0e8ae30e80c1c3c542b156226a75444525': Lib files needed are now copied to a subdirectory in the java/test directory, and on Macs the loader path for libhdf5.xxxs.so is changed in the temporary copy of libhdf5_java.dylib. Fix for HDFFV-11063
* Removed trailing whitespace from source files.Dana Robinson2020-05-261-1/+1
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* Correct spellingAllen Byrne2020-05-181-4/+4
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* Add github actions file and cleanup javaAllen Byrne2020-05-061-1/+3
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* Merge CMake and tools changes from developAllen Byrne2020-02-273-2/+146
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* Added new CMake options for testsAllen Byrne2020-01-191-35/+37
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* HDFFV-11001 merge java locale from developAllen Byrne2020-01-171-38/+38
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* Update version for HDF5_1_10Larry Knox2019-12-111-2/+2
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* Remove obsolete codeAllen Byrne2019-09-201-14/+13
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* Add missing class nameAllen Byrne2019-09-191-1/+1
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* Merge S3 code from develop to 1.10Allen Byrne2019-09-138-0/+381
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* HDFFV-10887 merge from developAllen Byrne2019-08-204-2/+74
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* Add java test prefix fixAllen Byrne2019-08-051-1/+2
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* Cleanup when merging to other branchesAllen Byrne2019-07-301-2/+2
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* HDFFV-10845, 10529 and CMake changes from developAllen Byrne2019-07-244-70/+34
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* HDFFV-10581 Correct PDB files and debug naming.Allen Byrne2019-07-091-1/+2
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* Update version on hdf5_1_10 branch to 1.10.6-snap0.Larry Knox2019-02-181-2/+2
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* Re-write of Java JNI error handlingJordan Henderson2019-02-145-5/+23
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