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* Fix some minor warnings (#4165)jhendersonHDF2024-03-171-2/+2
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* Issue #1824: Replaced most remaining sprintf with safer snprint (#4003)Sean McBride2024-02-131-9/+10
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* Add abi-complience check and upload to releases (#3996)Allen Byrne2024-02-082-11/+6
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* Fix doxygen errors (#3962)Allen Byrne2024-01-2919-19/+19
| | | | | | | | | | | * Switch warnings as errors to default OFF * Enable mac docs * Add doxygen action uses step * Use html div around snippet * Allow preset name to be an argument to cmake-ctest.yml
* Add variable option syncing for examples (#3885)Allen Byrne2023-12-14118-16123/+1
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* Develop merge examples (#3851)Allen Byrne2023-11-271-7/+0
| | | | | | | | | * Merge examples repo into library * Change grepTest to be more fault-tolerant * Update examples macro file * Exclude all Fortran examples from doxygen
* Add HDF5_DISABLE_TESTS_REGEX option to skip tests (#3859)Allen Byrne2023-11-221-0/+6
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* Don't build util tests when HDF5_EXTERNALLY_CONFIGURED=ON (#3781)Robert Adam2023-10-301-1/+1
| | | | Fixes #3780
* Clean Java test files on Autotools (#3740)Dana Robinson2023-10-211-1/+2
| | | Removes generated HDF5 and text output files when running `make clean`.
* Fix several spelling/grammar issues (#3621)jhendersonHDF2023-10-031-3/+3
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* Develop tools move (#3580)Allen Byrne2023-09-262-19/+19
| | | Reorganizes the tools files to support the VOL tests
* Correct comments about H5Z_FILTER_NONE (#3572)jhendersonHDF2023-09-221-1/+1
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* Strip HD prefix from string/char C API calls (#3540)Dana Robinson2023-09-151-3/+3
| | | | | | | | | | | | | | | | | | | | | * Strip HD prefix from string/char C API calls * HD(f)(put|get)(s|c) * HDstr* * HDv*printf * HD(s)(print|scan)f * HDperror But NOT: * HDstrcase* * HDvasprintf * HDstrtok_r * HDstrndup As those are not C99 and have portability work-around implementations. They will be handled later. * Fix th5_system.c screwup
* Correct java test dimension (#3482)Allen Byrne2023-09-012-2/+2
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* Windows runtime items go into the bin folder (#3320)Allen Byrne2023-08-021-1/+1
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* Removes the HD prefix from java C99 calls (#3149)Dana Robinson2023-06-1920-549/+548
| | | POSIX calls (HDstrndup, etc.) are unchanged
* Remove hbool_t/TRUE/FALSE from java (#3145)Dana Robinson2023-06-1614-88/+88
| | | Replaces with bool/true/false
* Many clang -Wextra-semi-stmt fixes (#2537)Sean McBride2023-06-161-2/+2
| | | | | * Adds semicolons to function-like macros * Adds a do..while(0) loop to some macros * Removes semicolons when inappropriate, especially H5E_TRY_BEGIN/END
* HDF5Array arrayify is missing break statement #3056 (#3060)Allen Byrne2023-06-061-0/+2
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* Cleans up Java JNI warnings and add java to -Werror checks (#2383)Dana Robinson2023-05-277-125/+90
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* Fix assert in Debug Windows Java JNI (#3012)Dana Robinson2023-05-251-4/+4
| | | | | | | | | Use of an uninitialized H5L_info2_t struct caused some JNI tests to raise asserts, causing a dialog box to be emitted, which would hang automated tests. Initializing the struct fixes the problem. This change also re-enables tests in the Windows Debug GitHub actions.
* Fix 'datatype' misspellings ('dataype') (#2984)Dana Robinson2023-05-191-2/+2
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* Fix java depends and pdb lib install (#2720)Allen Byrne2023-04-134-1/+23
| | | | | | | * Fix java depends and pdb lib install * Correct end of for loop depends * fix location of set last_test
* Change name of test file to avoid conflict (#2701)Allen Byrne2023-04-121-2/+2
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* Update java logger version (#2643)Allen Byrne2023-04-0318-22/+25
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* Fix minor things noted when doing 1.10 merges (#2610)Dana Robinson2023-03-241-1/+1
| | | | * Duplicated HDF_RESOURCES_DIR from cmake_ext_mod merge * Typos in comments
* Fix 2nd argument of Java H5Fis_accessible (#2535)Mark Kittisopikul2023-03-172-5/+5
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* Remove duplicated "help@hdfgroup.org" lines in file headers. (#2441)Larry Knox2023-02-111-1/+0
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* H5F_LIBVER_LATEST changes for move to 1.15 (#2288)Allen Byrne2022-12-214-4/+13
| | | | | | | | | | | | | | | * H5F_LIBVER_LATEST changes for move to 1.15 * Add new default api check * Format fixes * Fix default configure * fix lib version tests * Fix another version variable * Add 1.14 doc link
* Fix doxygen warnings and remove javadocs (#2324)Allen Byrne2022-12-202-18/+2
| | | | | * Fix doxygen warnings and remove javadocs * fix typo
* Develop jni trans (#2266)Allen Byrne2022-12-0611-421/+1407
| | | | | | | | | * Add compound and refactor out atomic types * Add Array String tests back * Convert Attribute version of compound example * Update transfer atom8ic read to return object
* Refactor JNI translate functions to a recursive switch on datatype (#2232)Allen Byrne2022-11-167-488/+914
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* Update copyright headers (#2184)Larry Knox2022-11-0150-51/+2
| | | | | * Updated source file copyright headers to remove "Copyright by the Board of Trustees of the University of Illinois", which is kept in the top-level COPYING file.
* Update develop branch version to 1.13.4-1 (#2189)Larry Knox2022-10-262-2/+2
| | | | | | * Updated version to 1.13.4-1 after creating hdf5_1_13_3 branch for 1.13.3 release. Added new version to exceptions in lines 74-5 of src/H5.c
* JNI: Improve varlen datatype handling in H5A/H5D read/write functions (#2156)Allen Byrne2022-10-2611-969/+1080
| | | | | | | | | | | | * Improve JNI VL datatype read/write to handle complex combinations * Implement VL of VL JNI writes and reads * Add Java VLofVL test for attributtes * Changes to address review issues * Fix H5Aread vl blocks
* Implement option for using CMake GNUInstallDirs (#2175)Allen Byrne2022-10-251-1/+1
| | | | | * Implement option for using CMake GNUInstallDirs * Add release notes
* Fix mostly java warnings, and cpp cast (#2134)Allen Byrne2022-10-037-181/+198
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* develop Merge doxygen from 1.12 branch (#2095)Allen Byrne2022-09-1458-1373/+2760
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* Update CMake code to 3.18 minimum version (#2080)Allen Byrne2022-09-0311-18/+14
| | | | | * Update CMake code to 3.18 minimum version * Updated release note
* Fix Java tests for Developer build modes (#2079)jhendersonHDF2022-08-295-5/+5
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* Cleanup some warnings in Java JNI code (#2034)jhendersonHDF2022-08-194-162/+278
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* Removes cmake_ext_mod (files moved to cmake) (#2041)Dana Robinson2022-08-191-1/+1
| | | | At one time this content was a git submodule shared between several projects but that time has long passed.
* Update version to 1.13.3-1 after creating hdf5_1_13_2 branch for 1.13.2 (#2004)Larry Knox2022-08-122-2/+2
| | | | release. Added new version to exceptions in line 75 of src/H5.c.
* Revert "Increment version to 1.13.3-1 after creating hdf5_1_13_2 branch for ↵Larry Knox2022-08-122-2/+2
| | | | | | | | release" This reverts commit c58558e872d529da6eda327183ca2d14cfa91b95. H5TEST-tcheck_version-release failed.
* Increment version to 1.13.3-1 after creating hdf5_1_13_2 branch for releaseLarry Knox2022-08-122-2/+2
| | | | of HDF5 1.13.2.
* Fix Cmake depends prop (#1995)Allen Byrne2022-08-111-1/+1
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* Remove misnamed java vol clear test (#1990)Allen Byrne2022-08-101-10/+0
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* Fix typos found in the rest of the hdf5 code-base (#1985)luzpaz2022-08-102-6/+6
| | | | | | | | | | | * Fix typos found in the rest of the hdf5 code-base * Typo in tool.cmake * Revert "Typo in tool.cmake" This reverts commit 06b8403d99757c7d20f1eed530cf317c3d84de4b. * Fix clang-format styling
* Develop cmake clean (#1971)Allen Byrne2022-08-075-15/+108
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* Develop clang 13 format (#1933)Allen Byrne2022-07-2640-398/+398
| | | | | * Update format source to clang 13 * More format changes
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