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* Basic alignment with async branch (#115)Quincey Koziol2020-11-231-2/+2
| | | | | | | * Basic alignment with async branch - trivial changes to reduce clutter in overall diff. * Update minor error code to reflect change within library * Update the error output to match library
* CMake: MINGW implies WIN32Michel Zou2020-10-305-5/+5
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* HDFFV-10868 Corrections from reviewAllen Byrne2020-10-292-22/+22
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* HDFFV-10868 - add H5Sselect API java wrappers.Allen Byrne2020-10-277-242/+1832
| | | Also added javadoc comments to H5E and H5s constants.
* Update javadoc comments to reduce warnings (#41)Allen Byrne2020-10-1643-97/+2963
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* Clang-format of source filesAllen Byrne2020-09-3060-6508/+7220
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* Fix jni with %Lg instead of %LfAllen Byrne2020-09-291-3/+1
| | | Fix warnings due to improper formed define tag in h5diff
* Pre-format fixes for warnings as errorsAllen Byrne2020-09-291-0/+2
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* OESS-98 merge with clang-format changesAllen Byrne2020-09-251-1/+1
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* File changes to affect formattingAllen Byrne2020-09-041-6/+6
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* CMake and script changes for clang-formatAllen Byrne2020-09-041-0/+8
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* Fix javadoc warningAllen Byrne2020-08-161-0/+4
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* Squash merge of file locking fixesDana Robinson2020-08-035-1/+178
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* Updated the Java tests to deal with H5Sset_extent_none changesDana Robinson2020-07-281-1/+1
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* Change load path in libhdf5_java.dylib to unversioned libhdf5.dylib forLarry Knox2020-07-071-1/+1
| | | | junit tests on Macs.
* Lib files needed are now copied to a subdirectory in the java/testLarry Knox2020-07-021-0/+8
| | | | | | directory, and on Macs the loader path for libhdf5.xxxs.so is changed in the temporary copy of libhdf5_java.dylib. Fix for HDFFV-11063
* Copy lib files for junit.sh to temporary subdirectory of <buildLarry Knox2020-06-271-6/+2
| | | | | directory>/java/test instead of to the prefix/lib directory. Fix for HDFFV-11063.
* Correct testAllen Byrne2020-05-061-18/+20
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* Trim trailing whitespaceQuincey Koziol2020-04-2014-15/+15
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* TRILAB-192 add c++ and fortran warnings build systems one fileAllen Byrne2020-04-051-3/+1
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* Fix Werror issues in JNI and toolsAllen Byrne2020-03-244-8/+12
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* TRILAB-192 fix JNI shadow warningAllen Byrne2020-03-244-4/+0
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* TRILAB-192 restrict extensive warnings to librariesAllen Byrne2020-03-241-0/+3
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* Update examples and fix old version references.Allen Byrne2020-02-262-36/+22
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* Fix Fortran macro use and jni commentAllen Byrne2020-02-252-2/+4
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* TRILAB-142 Change minimum CMake version to 3.12Allen Byrne2020-02-2111-11/+11
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* Fix always true issue because member is not dynamically allocatedAllen Byrne2020-02-211-7/+7
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* HDFFV-11032 fix JNI callAllen Byrne2020-02-211-2/+2
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* HDFFV-10996 - add java vol testsAllen Byrne2020-02-032-0/+84
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* Small fixes for tools and skip autotools tests for no filterAllen Byrne2020-01-291-20/+24
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* Merge pull request #2318 in HDFFV/hdf5 from ↵David Young2020-01-293-30/+29
|\ | | | | | | | | | | | | ~DYOUNG/werror:reduce-werror-diffs-1 to develop * commit 'fa1b2f6ef35c459c9f74ead885c119ae7f61c056': Reduce differences between my -Werror branch and `develop`:
| * Reduce differences between my -Werror branch and `develop`:David Young2020-01-293-30/+29
| | | | | | | | | | | | | | | | Rename index -> idx, fileno -> fnumber, fileno -> fno to avoid GCC shadowed declaration warnings about index(3). Convert #pragma GCC diagnostic push/pop/ignored to the HDF5 library's H5_GCC_DIAG_OFF()/H5_GCC_DIAG_ON() macros.
* | Merge pull request #2320 in HDFFV/hdf5 from ↵David Young2020-01-291-8/+8
|\ \ | | | | | | | | | | | | | | | | | | ~DYOUNG/werror:reduce-werror-diffs-2 to develop * commit 'a5f236e83bdd29e660a55c5577a69a3809605cda': Reduce casts of HDcalloc()/HDmalloc() that -Wc++-compat required.
| * | Reduce casts of HDcalloc()/HDmalloc() that -Wc++-compat required.David Young2020-01-291-8/+8
| |/ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Reduce gratuitous casts---e.g., (size_t)1. Use the right format string for a pointer. In the H5C sanity checks, change a "size increase" variable from ssize_t (too narrow) to int64_t (wide enough). Parenthesize every appearance of `storage` in the macro `H5D_CHUNK_STORAGE_INDEX_CHK(storage)` so that you can pass in an expression like &sc and it works properly. Disallow re-assignment of the `dset` parameter to H5D__chunk_init() because it helped assure me that it's safe to replace the repeating expression `&dset->shared->layout.storage.u.chunk` with `sc` throughout. Replace lengthy expressions such as `&dset->shared->layout.storage.u.chunk` with `sc` throughout several functions in H5Dchunk.c ISTR that the compiler warned that `sc` was declared but unused in a couple of functions, and then I found that `sc` could be used in many places. Maybe the disused `sc` appeared because a bunch of code was copied and pasted, I don't know. Anyway, it's a lot tighter code now that I use `sc`. In H5D__chunk_update_old_edge_chunks() and H5D__chunk_delete() I actually expand `sc` and another temporary variable, `pline`, because they're used only in !defined(NDEBUG) code. This squashes unused-variable warnings in the defined(NDEBUG) configuration. Don't drop the `volatile` qualification with a cast in tools/src/h5import/h5import.c.
* | Merge pull request #2321 in HDFFV/hdf5 from ↵David Young2020-01-291-2/+8
|\ \ | | | | | | | | | | | | | | | | | | ~DYOUNG/werror:reduce-werror-diffs-3 to develop * commit 'f19e06b59ee53f17465a7b5974c25c3245a40d9a': testpar/t_2Gio.c: Fix a typo that I think was introduced by a previous warnings PR. An array element was assigned to itself---shape[2]Â =Â shape[2];---instead of being assigned to chunk[2].
| * | testpar/t_2Gio.c: Fix a typo that I think was introduced by aDavid Young2020-01-291-2/+8
| |/ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | previous warnings PR. An array element was assigned to itself---shape[2]Â =Â shape[2];---instead of being assigned to chunk[2]. fortran/src/H5Pf.c: move conditional compilation controlled by H5_NO_DEPRECATED_SYMBOLS outside of a function for readability. fortran/src/H5match_types.c: put a variable's declaration under the same conditional compilation (H5_FORTRAN_HAVE_C_LONG_DOUBLE) as its use. For now, skip compilation of some unused debug dump routines in the JNI. While I'm in the JNI, delete a set-but-unused variable. src/H5Z.c: condition a variable declaration on H5_NO_DEPRECATED_SYMBOLS so that it's not declared but unused or vice versa. test/cache_common.h: add an #include in to get some symbols we need to avoid implicit declaration warnings. test/dsets.c: use a more conventional conditional-compilation syntax. test/dt_arith.c, test/fillval.c: initialize a bunch of uninitialized variables before use. test/vfd.c: pass the expected type of `void **` to posix_memalign(3) instead of `int **`. testpar/t_bigio.c: explicitly compare with 0 instead of using ! when "equal to 0?" is the question not "is false?" Repair some indentation while I'm here. testpar/testpar.h: repair misaligned line-continuation backslashes in a macro that probably should be a function so that we don't have to fiddle with the line continuation to begin with. tools/src/h5repack/h5repack_main.c: fix some compiler fussing about enums. tools/test/perform/pio_engine.c: the compiler fusses if you cast a function call returning double directly to off_t. It's ok if you cast a variable that's a double to off_t, however. Write and use a new function, sqrto(), to avoid the cast warnings.
* | Introduce new H5VL _by_value routinesJordan Henderson2020-01-295-15/+100
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* Squashed commit of the token_refactoring branch:Dana Robinson2020-01-1658-1074/+1994
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* HDFFV-11001 need to qualify all by parallel or serial typesAllen Byrne2020-01-156-40/+42
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* HDFFV-11001 Add fine control over testingAllen Byrne2020-01-155-5/+5
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* HDFFV-10995 - add missing importAllen Byrne2020-01-082-0/+2
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* HDFFV-10995 - need to add importAllen Byrne2020-01-082-0/+2
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* HDFFV-10995 - Update all time instancesAllen Byrne2020-01-081-38/+38
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* HDFFV-10995 adjust testing to tolerate non-US localeAllen Byrne2020-01-083-3/+3
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* HDFFV-10976,-10980 Init obj_type before calling H5Rget_obj_type3Allen Byrne2019-12-202-2/+2
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* Fix java include, h5watch and remove clang tool.Allen Byrne2019-12-101-1/+1
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* Add H5Rdestroy calls to cleanupAllen Byrne2019-12-081-0/+3
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* Remove problem tests for nowAllen Byrne2019-12-081-202/+102
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* HDFFV-10876 ignore old reference API testsAllen Byrne2019-12-073-40/+26
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* Address compile warningsAllen Byrne2019-12-065-31/+30
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