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* Add github actions and cleanup java whitespaceAllen Byrne2020-05-067-25/+27
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* TRILAB-192 - merge changes from developAllen Byrne2020-04-071-3/+1
| | | | Single source, config files, for warnings for both autotools and CMake. Update CMake libraries, tools, tests to use correct flags.
* TRILAB-192 merging warnings changes from developAllen Byrne2020-03-305-12/+15
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* Update examples and fix version referencesAllen Byrne2020-02-262-36/+22
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* Fix Fortran macro use and jni commentAllen Byrne2020-02-252-2/+4
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* Merge changes from develop mostly cmake 3.12 minimum versionAllen Byrne2020-02-2311-11/+11
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* Merge changes from develop for CMake and JavaAllen Byrne2020-02-212-9/+9
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* HDFFV-10996 merge java vol tests from developAllen Byrne2020-02-042-0/+84
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* Squashed commit of the following:David Young2020-01-315-40/+45
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | commit ff7a9a34de2fcd78f5d32a1532f3d0e224b20d94 Author: Kimmy Mu <kmu@hdfgroup.org> Date: Wed Jan 29 14:12:18 2020 -0600 Merge pull request #2324 in HDFFV/hdf5 from ~KMU/hdf5:hdf5_1_12 to hdf5_1_12 * commit '781fa57f6ee816e037dd12fff02d37ff7ec9c2b1': pick up missing piece from merge Merge pull request #2311 in HDFFV/hdf5 from ~KMU/hdf5:misc to develop remove redundent definition Merge pull request #2311 in HDFFV/hdf5 from ~KMU/hdf5:misc to develop Merge pull request #2311 in HDFFV/hdf5 from ~KMU/hdf5:misc to develop Merge pull request #2315 in HDFFV/hdf5 from ~KMU/hdf5:develop to develop missing prototype warning prototype issue Merge pull request #2306 in HDFFV/hdf5 from ~KMU/hdf5:develop to develop Merge pull request #2300 in HDFFV/hdf5 from ~KMU/hdf5:squashed_cast to develop Merge pull request #2291 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/uninitialized to develop Merge pull request #2295 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/float to develop Merge pull request #2292 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/prototype to develop Merge pull request #2094 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/unused to develop commit 9f3d808c05d2a3b308f32c958c6671fcac0a432c Author: David Young <dyoung@hdfgroup.org> Date: Wed Jan 29 11:43:55 2020 -0600 testpar/t_2Gio.c: Fix a typo that I think was introduced by a previous warnings PR. An array element was assigned to itself---shape[2]Â =Â shape[2];---instead of being assigned to chunk[2]. fortran/src/H5Pf.c: move conditional compilation controlled by H5_NO_DEPRECATED_SYMBOLS outside of a function for readability. fortran/src/H5match_types.c: put a variable's declaration under the same conditional compilation (H5_FORTRAN_HAVE_C_LONG_DOUBLE) as its use. For now, skip compilation of some unused debug dump routines in the JNI. While I'm in the JNI, delete a set-but-unused variable. src/H5Z.c: condition a variable declaration on H5_NO_DEPRECATED_SYMBOLS so that it's not declared but unused or vice versa. test/cache_common.h: add an #include in to get some symbols we need to avoid implicit declaration warnings. test/dsets.c: use a more conventional conditional-compilation syntax. test/dt_arith.c, test/fillval.c: initialize a bunch of uninitialized variables before use. test/vfd.c: pass the expected type of `void **` to posix_memalign(3) instead of `int **`. testpar/t_bigio.c: explicitly compare with 0 instead of using ! when "equal to 0?" is the question not "is false?" Repair some indentation while I'm here. testpar/testpar.h: repair misaligned line-continuation backslashes in a macro that probably should be a function so that we don't have to fiddle with the line continuation to begin with. tools/src/h5repack/h5repack_main.c: fix some compiler fussing about enums. tools/test/perform/pio_engine.c: the compiler fusses if you cast a function call returning double directly to off_t. It's ok if you cast a variable that's a double to off_t, however. Write and use a new function, sqrto(), to avoid the cast warnings. commit 43a4b80b21c0329fbc1f9a0e2854795189f0bb50 Author: David Young <dyoung@hdfgroup.org> Date: Wed Jan 29 10:47:30 2020 -0600 Reduce casts of HDcalloc()/HDmalloc() that -Wc++-compat required. Reduce gratuitous casts---e.g., (size_t)1. Use the right format string for a pointer. In the H5C sanity checks, change a "size increase" variable from ssize_t (too narrow) to int64_t (wide enough). Parenthesize every appearance of `storage` in the macro `H5D_CHUNK_STORAGE_INDEX_CHK(storage)` so that you can pass in an expression like &sc and it works properly. Disallow re-assignment of the `dset` parameter to H5D__chunk_init() because it helped assure me that it's safe to replace the repeating expression `&dset->shared->layout.storage.u.chunk` with `sc` throughout. Replace lengthy expressions such as `&dset->shared->layout.storage.u.chunk` with `sc` throughout several functions in H5Dchunk.c ISTR that the compiler warned that `sc` was declared but unused in a couple of functions, and then I found that `sc` could be used in many places. Maybe the disused `sc` appeared because a bunch of code was copied and pasted, I don't know. Anyway, it's a lot tighter code now that I use `sc`. In H5D__chunk_update_old_edge_chunks() and H5D__chunk_delete() I actually expand `sc` and another temporary variable, `pline`, because they're used only in !defined(NDEBUG) code. This squashes unused-variable warnings in the defined(NDEBUG) configuration. Don't drop the `volatile` qualification with a cast in tools/src/h5import/h5import.c. commit 035bfa0769a4012881fc659b673bacf44d146537 Author: David Young <dyoung@hdfgroup.org> Date: Tue Jan 28 20:35:28 2020 -0600 Reduce differences between my -Werror branch and `develop`: Rename index -> idx, fileno -> fnumber, fileno -> fno to avoid GCC shadowed declaration warnings about index(3). Convert #pragma GCC diagnostic push/pop/ignored to the HDF5 library's H5_GCC_DIAG_OFF()/H5_GCC_DIAG_ON() macros.
* Merge pull request #2331 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_12 to ↵Allen Byrne2020-01-311-20/+24
|\ | | | | | | | | | | | | | | | | | | | | hdf5_1_12 * commit 'a29f9e8451ffa391c8395db1142bd003f40f3aaa': Merge changes from develop to fix various issues Remove commented flags Revert accidental change Chnage tools debug macros to not use the error stack Create common warnings for build systems
| * Merge changes from develop to fix various issuesAllen Byrne2020-01-301-20/+24
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* | Introduce new H5VL _by_value routinesJordan Henderson2020-01-295-15/+100
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* Update version to 1.12.1-snap0 for hdf5_1_12 branch.Larry Knox2020-01-282-4/+4
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* Improved CMake options for testsAllen Byrne2020-01-195-39/+41
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* Squashed commit of the token_refactoring branch:Dana Robinson2020-01-1958-1074/+1994
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* Merge tools changes from developAllen Byrne2020-01-133-41/+45
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* HDFFV-10976,-10980 h5dump, h5ls, h5diff use new ref APIsAllen Byrne2019-12-202-2/+2
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* Add missing include folderAllen Byrne2019-12-101-1/+1
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* Fix compile error and add ref destroy to Java testAllen Byrne2019-12-091-202/+105
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* HDFFV-10876 Merge from developAllen Byrne2019-12-0920-221/+1911
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* Revert "Merge branch 'hdf5_1_12' of ↵Jerome Soumagne2019-12-092-5/+0
| | | | | | | https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into hdf5_1_12" This reverts commit 9f9336a5bd541752f472bab4c93da8de89f862cd, reversing changes made to 437a1919e7ba60fe75a33a466d264183a0255319.
* Merged HDFFV-10929_2GB_testing to hdf5_1_12Richard Warren2019-12-062-0/+5
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* Fix various Java issues when deprecated symbols are disabledJordan Henderson2019-10-1011-27/+131
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* Set versions in initial hdf5_1_12 revision.hdf5_1_12-initialLarry Knox2019-09-252-4/+4
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* Remove obsolete symbolAllen Byrne2019-09-201-14/+13
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* small syntax changesAllen Byrne2019-09-195-20/+21
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* Change unused variable to generic formAllen Byrne2019-09-191-1/+1
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* HDFFV-10903 - fix VFD constants in JNIAllen Byrne2019-09-171-2/+14
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* HDFFV-10901 add missing config optionsAllen Byrne2019-09-131-1/+0
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* revert as CHECK will first check for exceptionAllen Byrne2019-09-101-6/+6
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* Clear exception for getting JNI string to clear the exceptionAllen Byrne2019-09-101-6/+6
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* Add statement for label if code unimplementedAllen Byrne2019-09-051-0/+2
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* Fix unused varAllen Byrne2019-09-051-2/+6
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* Correct label and var namesAllen Byrne2019-09-051-14/+14
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* Add back missing java implementationAllen Byrne2019-09-056-119/+407
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* OESS-29 Fix HD prefix in perform and enable test compileAllen Byrne2019-08-271-3/+3
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* Untangle #ifdef mess in ROS3 code.Dana Robinson2019-08-201-1/+1
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* HDFFV-10887 Implement requested functionsAllen Byrne2019-08-197-6/+164
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* Fix compiler warnings with diabled ROS3 and HDFS VFDs.Jacob Smith2019-08-141-11/+3
| | | | | | Fix misuse of [HD]strncpy and [HD]snprintf. Minor formatting changes. Fix test cleanup issue with java groups example.
* Update junit.sh.in to copy lib files to $prefix/lib.Larry Knox2019-08-021-3/+4
| | | | Correct checking for s3 and hdfs options.
* Merge cleanup mostly whitespaceAllen Byrne2019-07-303-5/+1
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* Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-07-2916-0/+710
|\ | | | | | | | | | | | | | | * commit 'f97e11e7635a0cd8728d4604ca5dceb3925ba44c': Update comment and check for strtoumax. Modify CMakeLists.txt file for renamed h5tools_test_utils files. Add HD to string functions. Switched strtoul to strtoumax in H5FDs3comms.c. Removed unused functions and variables in s3 and hdfs TestH5Pfapl*.java. Update Copyright headers. Squashed commit of the following:
| * Add HD to string functions.Larry Knox2019-07-263-426/+0
| | | | | | | | | | | | Switched strtoul to strtoumax in H5FDs3comms.c. Removed unused functions and variables in s3 and hdfs TestH5Pfapl*.java. Update Copyright headers.
| * Squashed commit of the following:Larry Knox2019-07-2517-0/+1136
| | | | | | | | | | | | | | | | | | | | | | Merge changes from update_merged_S3_HDFS branch into develop. commit d5034315aea88629929ac0c9c59ebfafd5f21a31 Merge: 9c48823 d3fdcd8 Author: Larry Knox <lrknox@hdfgroup.org> Date: Thu Jul 25 08:24:53 2019 -0500 Merge branch 'develop' into update_merged_S3_HDFS
* | Update libvers usageAllen Byrne2019-07-282-3/+3
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* Use generator expr to get correct nameAllen Byrne2019-07-225-145/+86
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* Correct java load library name accessAllen Byrne2019-07-185-10/+12
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* CMake generator expr cannot be used in get_property cmdAllen Byrne2019-07-181-2/+3
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* HDFFV-10845 fix configure check and PATHsAllen Byrne2019-07-175-5/+5
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* Correct test use of library nameAllen Byrne2019-07-081-1/+2
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