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* [svn-r24997] Added compiler versions for mpich to settings file and ↵Larry Knox2014-04-091-1/+1
| | | | | | | | | | | | | configure summary. For make installcheck, compile and run installed examples using the installed scripts. They were being compiled but not run. Add Fortran2003 examples to the run-ex-fortran script when fortran2003 is enabled. Set flag to -O3 in production mode for Intel compilers other than those with specified other settings. Gentoo patches: Remove unnecessary setting of LD_LIBRARY_PATH from configure. Prevent potential array subscript out of bounds error in perform/pio_engine.c and sio_engine.c. Tested with h5committest on jam, koala, ostrich and platypus, on emu and kite, and parallel tests on jam, koala and platypus with mpich built with gnu 4.8.2 and with intel compilers.
* [svn-r24864] Description:Quincey Koziol2014-03-211-642/+158
| | | | | | | | | | | | | | | | | | Remove all traces of MPI-POSIX VFD and GPFS detection/code. Remove remaining traces of stream VFD. Remove testpar/t_posix_compliant test (it's not actually verifying anything). Clean up H5D__mpio_opt_possible() further. Moved environment variable that disables MPI collective operations into MPI-IO VFD (instead of it being in src/H5S.c). A few other small code cleanups. Tested on: Mac OSX/64 10.9.2 (amazon) w/parallel & serial
* [svn-r24726] Description:Quincey Koziol2014-02-201-1/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Revert some earlier usage of strncpy, which was incorrect. Bring Coverity changes from branch back to trunk: r20821: Use HDstrncpy. --gh (Fixed already, with strdup) r20822: (Not merged, incorrect use of HDstrncpy()) r20823: (Not merged, incorrect use of HDstrncpy()) r20824: Maintenance: Bug fix: addressed CID 666. Value stored at *expression_len should be used in the call to HD5packFstring to avoid overflow (and unnecessary arithmetic calculation and casting) r20825: Issue 642: Added check for error and handler with print to stderr and exit. r20826: Undo revision 20818, as that issue has already been fixed in the 1.8 branch and trunk (but not coverity branch) r20827: (Not merged, incorrect use of HDstrncpy()) r20828: Use HDstrncpy. --gh (Corrected use of strncpy()) r20829: Check return of H5Lget_val(print_udata->fid, path, targbuf, linfo->u.val_size + 1, H5P_DEFAULT) and if error set trgbuf[0] to 0. Check if H5Lunpack_elink_val(targbuf, linfo->u.val_size, NULL, &filename, &objname) was successful and allow print. Otherwise filename and objname are not created. (init those to NULL) r20830: resolved coverity issues 939, 940, 941, 944, and 947. all were complaints about use of sprintf, and in all cases, the buffers used were large enough for all eventualities. Resolved issue by replacing calls to sprintf with calls to snprintf. r20831: Maintenance: Addressed CID 852 Replaced sprintf with snprintf r20832: Purpose: Fix valgrind issues with hl/examples/ex_image2 Description: Modified hl/examples/ex_image2 to free global "gbuf" before exit. Tested on: Mac OSX/64 10.9.1 (amaon) w/C++, FORTRAN & Threadsafety (too minor to require h5committest)
* [svn-r23862] Change printfs in perform output and h5dump to prevent overflow.Mohamad Chaarawi2013-07-031-28/+28
| | | | | | This fixes: https://jira.hdfgroup.uiuc.edu/browse/HDFFV-8450 Tested on Jam.
* [svn-r23810] revert printf format changes to do a better solution.Mohamad Chaarawi2013-06-241-16/+16
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* [svn-r23801] Change printfs in perform output for long long to use %lld ↵Mohamad Chaarawi2013-06-201-16/+16
| | | | | | | | instead of %Hd. The later is for shorts. This fixes: https://jira.hdfgroup.uiuc.edu/browse/HDFFV-8450 Tested on Jam.
* [svn-r22004] Reduced warnings and fixed conflicts resulting from including ↵Allen Byrne2012-02-281-21/+21
| | | | | | h5tools.h Tested: local linux
* [svn-r21334] HDFFV-7687: add HD macro prefrix to functions and use h5_stat_t ↵Allen Byrne2011-08-301-47/+51
| | | | | | where necessary reviewed
* [svn-r21228] Added #ifdefs around #include unistd.h and created windows ↵Allen Byrne2011-08-151-0/+2
| | | | | | getlogin() function for building HDF5 parallel on windows. Reviewed and tested locally and tested by user.
* [svn-r17716] Cosmetic change to use exit(EXIT_FAILURE) instead of exit(1).Albert Cheng2009-10-211-2/+2
| | | | Tested: jam-pp.
* [svn-r17606] Code Cleanup:Albert Cheng2009-10-071-5/+0
| | | | | | | | TFLOPS machine has retired long ago. Removed all code specific for its support. Test: h5committested.
* [svn-r16489] Fixed bug #1459 by eliminating the macro long_long and ↵Allen Byrne2009-02-181-17/+17
| | | | | | | | | | | replacing all instances with long long. Tested: h5comittest fedora 10 x64 Vista 32, VS2005, IVF101 XP32, Cygwin
* [svn-r15649] Included macros for portability of h5perf code among HDF5 versions.Christian Chilan2008-09-171-13/+35
| | | | Tested on kagiso, abe, and cobalt.
* [svn-r15628] Description:Quincey Koziol2008-09-161-27/+27
| | | | | | | | | | | | | Remove trailing whitespace from C/C++ source files, with the following script: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Tested on: Mac OS X/32 10.5.5 (amazon) No need for h5committest, just whitespace changes...
* [svn-r15397] Update to the h5perf files that includes bug fixes and extensions.Christian Chilan2008-07-231-1970/+2188
| | | | Tested on kagiso and abe.
* [svn-r14199] Description:Quincey Koziol2007-10-111-4/+4
| | | | | | | | | | | | | | | | | | | | | Add H5Dcreate to API versioned routines, replacing internal usage with H5Dcreate2 Fix thread-safe error stack initialization for API versioned error stack printing routines. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14193] Description:Quincey Koziol2007-10-081-5/+4
| | | | | | | | | | | | | | | | | | | Make H5Dopen versioned and change all internal usage to use H5Dopen2 Add simple regression test for H5Dopen1 Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-071-2/+3
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
* [svn-r12440] Purpose:Quincey Koziol2006-06-271-16/+16
| | | | | | | | | | | Code cleanup Description: Trim trailing whitespace in Makefile.am and C/C++ source files to make diffing changes easier. Platforms tested: None necessary, whitespace only change
* [svn-r11265] Purpose:Albert Cheng2005-08-191-1154/+1933
| | | | | | | | | | | | | New feature Description: All datasets were 1D only before. Added -g to use 2D datasets such that it allows more options in testing various access patterns. Platforms tested: heping pp. Misc. update:
* [svn-r11245] Purpose:Quincey Koziol2005-08-131-7/+7
| | | | | | | | | | | | | | | | | | | | Code cleanup Description: Trim trailing whitespace, which is making 'diff'ing the two branches difficult. Solution: Ran this script in each directory: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r9727] Purpose:Quincey Koziol2004-12-291-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-) Description: Generally speaking, this is the "signed->unsigned" change to selections. However, in the process of merging code back, things got stickier and stickier until I ended up doing a big "sync the two branches up" operation. So... I brought back all the "infrastructure" fixes from the development branch to the release branch (which I think were actually making some improvement in performance) as well as fixed several bugs which had been fixed in one branch, but not the other. I've also tagged the repository before making this checkin with the label "before_signed_unsigned_changes". Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel & fphdf5 FreeBSD 4.10 (sleipnir) w/threadsafe FreeBSD 4.10 (sleipnir) w/backward compatibility Solaris 2.7 (arabica) w/"purify options" Solaris 2.8 (sol) w/FORTRAN & C++ AIX 5.x (copper) w/parallel & FORTRAN IRIX64 6.5 (modi4) w/FORTRAN Linux 2.4 (heping) w/FORTRAN & C++ Misc. update:
* [svn-r7181] Purpose:Quincey Koziol2003-07-071-4/+0
| | | | | | | | | | | Version update Description: Removed 1.4 compatibility code in the library. Platforms tested: FreeBSD 4.8 (sleipnir) h5committest
* [svn-r7128] Purpose:Albert Cheng2003-06-301-1/+4
| | | | | | | | | | | | | | | feature change, new feature. Description: Had the HDF5_PARAPREFIX default set to /tmp. Changed it to null so that data files are created in current directory by default. Also added a code to print data filename used when debug level > 0. Platforms tested: Tested in modi4 parallel. Misc. update:
* [svn-r7091] Purpose:Quincey Koziol2003-06-241-11/+0
| | | | | | | | | | | | | Code cleanup Description: Remove the fill-value option entirely, since the 1.5.x library's default behavior is now the same as the 1.4.x behavior and also there is no corresponding code for implementing fill-values with the POSIX or MPI-I/O tests. Platforms tested: FreeBSD 4.8 (sleipnir) w/parallel too small to need h5committest
* [svn-r7019] Purpose:Quincey Koziol2003-06-101-0/+4
| | | | | | | | | | | | | | Compatibility fix Description: The H5P[set|get]_fapl_mpiposix calls changed between v1.4.x and v1.5.x. Solution: Wrap them in the v1.4 backward compatibility #ifdefs and update tests, etc. Platforms tested: FreeBSD 4.8 (sleipnir) w/paralle & v1.4 compatibility h5committest pointless
* [svn-r6806] Purpose:Bill Wendling2003-05-061-2/+3
| | | | | | | | | | | | | | | | Bug Fix Description: When I changed the H5P{set,get}_fapl_mpiposix functions to accept another parameter, I didn't change it in these files. Solution: Added the new "use_gpfs" parameter. Platforms tested: Modi4 (only affects the parallel stuff, so no need for full testing). Misc. update:
* [svn-r5890] Purpose:Bill Wendling2002-08-231-2/+2
| | | | | | | | | | Bug Fix Description: Some more naming mistakes. Solution: Stopped calling it ds_start and calling the structure its real name. Platforms tested: NERSC
* [svn-r5889] Purpose:Bill Wendling2002-08-231-9/+9
| | | | | | | | Bug Fix Description: Structure elements in the GPFS code weren't named correctly. Solution: Changed the names to the correct values.
* [svn-r5807] Purpose:Bill Wendling2002-07-171-39/+128
| | | | | | | | | | | | | | | | | | | | | | | | | Update, Bug Fix, and Feature Add Description: - Updated how AC_{ENABLE,WITH} help messages were being generated. Autoconf now gives you an AC_HELP_STRING macro to use to create them. - Fixed the problem with Linux LFS on RedHat 7.3 machines. It wasn't finding getdents64(), so we can't rely on that being present anymore... - Added GPFS detection and setting. - Updated how compression is specified. It's no longer necessary to test for HAVE_ZLIB_H, HAVE_LIBZ, and HAVE_COMPRESS2. The one macro {H5_}HAVE_COMPRESSION takes care of all of these. Solution: Changed the check for Linux LFS from looking for getdents() to looking at the version number of the kernel (using the uname -r command). You can still override with the --enable-linux-lfs switch if you really believe that your <2.4 kernel has LFS support. Platforms tested: Linux (2.2 and 2.4)
* [svn-r5798] Purpose:Quincey Koziol2002-07-151-6/+17
| | | | | | | | | | New feature. Description: Added MPI-posix VFL driver support. Platforms tested: FreeBSD 4.6 (sleipnir) w/parallel & IRIX64 6.5 (modi4) w/parallel
* [svn-r5760] Purpose:Quincey Koziol2002-07-021-470/+710
| | | | | | | | | | New features, etc. Description: Bring over all the recent changes from the release branch. Platforms tested: IRIX64 6.5 (modi4) w/parallel
* [svn-r5720] Purpose:Quincey Koziol2002-06-271-85/+145
| | | | | | | | | | New Feature Description: Added support for collective I/O with MPI and HDF5 access methods. Platforms tested: IRIX64 6.5 (modi4) w/parallel
* [svn-r5718] Purpose:Quincey Koziol2002-06-271-173/+128
| | | | | | | | | | | | New Feature Description: Added interleaved block pattern to MPI and HDF5 access methods. Also, changed the blocks to just use the same size as the regular blocks for I/O, instead of a separate block size. Platforms tested: IRIX64 6.5 (modi4) w/parallel
* [svn-r5674] Purpose:Quincey Koziol2002-06-191-8/+8
| | | | | | | | | | Code cleanup Description: Removed more compiler warnings, etc. Platforms tested: Linux 2.2.x (eirene) w/parallel
* [svn-r5667] Purpose:Quincey Koziol2002-06-191-13/+13
| | | | | | | | | | Code cleanup Description: Turn on more warnings in the IRIX builds and clean them up. Platforms tested: IRIX64 6.5 (modi4) w/parallel
* [svn-r5547] Purpose:Quincey Koziol2002-06-061-1/+1
| | | | | | | | | | | | | Bug fix. Description: H5Fopen call was using H5P_DEFAULT instead of file access flags Solution: Changed H5P_DEFAULT to H5F_ACC_RDONLY Platforms tested: IRIX64 6.5 (modi4) w/parallel
* [svn-r5539] Description:Albert Cheng2002-06-061-21/+35
| | | | | | Added the '-D v' option for "verify data correctness". Platforms tested: modi4, eirene, burrwhite (all pp).
* [svn-r5531] Purpose:Bill Wendling2002-06-041-20/+296
| | | | | | | | | Feature Add Description: Added support for testing only the "write" operations. Use the "-w" or "--write-only" flags for this. Platforms tested: Linux (parallel) & Modi4 (parallel)
* [svn-r5503] Purpose:Albert Cheng2002-06-011-120/+363
| | | | | | | | | Features Description: Added a few macros to print rank and size of MPI_COMM_WORLD in a unifed style. Platforms tested: modi4, eirene, burrwhite
* [svn-r5486] Purpose:Albert Cheng2002-05-301-81/+35
| | | | | | | | | | | Code cleanup and new feature. Description: Cleaned out some old debug print statments. Added option -B for interleaved I/O block size. (Just parsing and sanity check is done. Real I/O implementation is not done yet.) Platforms tested: eirene(pp)
* [svn-r5481] Description:Albert Cheng2002-05-291-6/+6
| | | | | | | Renamed pio_info_g as h5_io_info_g to better reflect its general purpose. Platforms tested: eirene(pp)
* [svn-r5469] Purpose:Bill Wendling2002-05-281-5/+93
| | | | | | | | | | | | | Feature Addition Description: Added feature which prints out the parameters and the MPI_Info object for a run for each process. Added some functions for the GPFS system. They are ifdef'ed out right now (well, they need to ahve the non-existant H5_HAVE_GPFS macro set) and aren't in use just yet. But the stub functions are there. Platforms tested: Linux
* [svn-r5463] Description:Albert Cheng2002-05-281-15/+21
| | | | | | | | | | | Folded the changes made in v1.4 into v1.5. print library version information in help page too. Specify the nofill feature supported in v1.5 only. Print the values of the KB, MB and GB in case a user wants to see them. Setup a macro, H5_HAVE_NOFILL, to indicate if Dataset no fill feature is supported. If not, --no-fill is an invalid option. Platforms tested: modi4
* [svn-r5456] Purpose:Bill Wendling2002-05-221-117/+188
| | | | | | | | | | Update Description: Updating the source for the PIO performance tests with the current code that's in the V1.4 branch. It includes the newest command-line parameters. Platforms tested: Linux-pp
* [svn-r5446] Purpose:Albert Cheng2002-05-211-16/+1
| | | | | | | | | Feature Description: moved the routines of setting up and dumping MPI-info object to test library so that it is avaiable for all tests too. Platforms tested: modi4(pp), eirene (serial)
* [svn-r5426] Purpose:Albert Cheng2002-05-161-29/+25
| | | | | | | Folded the added feature of setting MPI Info object from v1.4 to this branch. Platforms tested: modi4
* [svn-r5407] Purpose:Albert Cheng2002-05-131-11/+16
| | | | | | | | | | | | | | | | | | Bug fix Description: Was not able to handle data size (file size) larger than 32bits. Was using long, which is only 4 bytes big in SP, thus overflowing into negative when trying to address 2GB or larger. Solution: Changed those variables involved in file size/offset calculation to type off_t. (If a certain system/compiler has off_t defined as 4 bytes, it can't write to file size larger than 2GB anyway.) Note that the lseek of SP with -D_LARGE_FILE still fails for offset larger than 2GB (works for 2GB). That has to be fixed soon. Platforms tested: burrwhite (linux 2.4) and modi4 parallel.
* [svn-r5375] Purpose:Albert Cheng2002-05-071-2/+2
| | | | | | Changed all API to use MPI_WTIME timer. Just to be consistent. Platforms tested: modi4
* [svn-r5369] Purpose:Quincey Koziol2002-05-071-4/+0
| | | | | | | | | | Code cleanup Description: Remove incorrect MPI_Barrier() call in data I/O loop. Platforms tested: IRIX64 6.5 (modi4)
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