| Commit message (Collapse) | Author | Age | Files | Lines |
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Also a lot of reformating that do not change code.
Tested: jam-pp.
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Changed 'THG' to 'The HDF Group' in various HDF5 source files,
most of which are <subdirectory>/COPYING.
-- Closes Bugzilla entry 1403.
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Function get_unique_name() had potential string overflow problem.
Fixed. Also removed some unused macros.
Tested by h5committest.
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Description:
One open() call with O_CREAT flag did not have the third required argument.
Solution:
Added the right third argument. Also changed all open() calls to HDopen
macros for more portable coding.
Tested:
h5committested.
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Description: The h5perf tool was getting installed in 1.8 and 1.9, but
not in 1.6.
Added a line to perform/Makefile.in to ensure that h5perf
is installed in 1.6.
Also added a line to test/Makefile.in, adding an install target
which will build all tests (equivalent to 'make all'). H5perf
needs the test library built, but doing a 'make install'
from the top level would fail in the perfom directory because
nothing would happen upon recursing into the test directory.
Tested: kagiso, jam, smirom, liberty
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Tested on kagiso.
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close files.
Tested on kagiso.
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Tested on kagiso and cobalt.
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HDF5 library. The Dependencies files are generated by
"make depend".
Tested:
h5committest, also serial in Kagiso is tested.
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Tested on kagiso, cobalt, and abe.
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removing the stream-vfd.
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Tested platform: Kagiso (serial, pp)
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Tested platform: Kagiso (serial, pp)
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h5perf depends on the test library which isn't installed; this is bad
form and breaks at least one automatic installation package (Bugzilla
bug 707).
h5perf is still built and can be run manually.
This change has already been made in 1.8.
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Description:
Add per-directory abbreviated copyright notices
(abbreviated COPYING files pointing to full notices).
Tested:
MANIFEST verified; not otherwise tested.
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Code cleanup
Description:
Check in some of the code cleanups from working on the external link
support. (This doesn't include any of the external link features)
Platforms tested:
FreeBSD 4.11 (sleipnir)
Mac OSX.4 (amazon)
Linux 2.4
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Appearance change.
Description:
depend1.in:
Change the style of the copyright generation commands to a simplier
style.
Dependencies:
Regenerated the Dependencies file.
Platforms tested:
Tested in heping in serial and parallel modes.
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Copyright fix
Description:
Added copyright to generated Dependency files.
This had the side effect of updating some Dependency files.
Platforms tested:
heping
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Added copyright notice.
Platforms tested:
These are not built automatically. Tested out okay by hand.
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Code cleanup
Description:
Trim trailing whitespace, which is making 'diff'ing the two branches
difficult.
Solution:
Ran this script in each directory:
foreach f (*.[ch] *.cpp)
sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f
end
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
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Simple cosmetic change.
Platforms tested:
heping pp mode.
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Feature: make install now installs h5perf.
Description:
h5perf was not installed before. Now it is installed during 'make install'
and uninstalled during 'make uninstall'.
Platforms tested:
mir
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Bug fixes (provided by Leon Arber).
Description:
gen_report spewed many messages and could not report speeds that are
less than 100MB/s.
Solution:
Removed -w which prints warning messages.
Fixed code to recognize speeds under 100MB/s.
Platforms tested:
Eirene.
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Bug fix.
Description:
Function _flushall() is not available on Cygwin. So a Cgywin macro is added so the compiler will not call this function when building HDF5 on Cygwin.
Solution:
Change the following codes:
#ifdef H5_HAVE_SYSTEM
#ifdefined WIN32
_flushall();
#else
HDsystem ("sync");
HDsystem ("df >/dev/null");
#endif
to:
#ifdef H5_HAVE_SYSTEM
#if defined(WIN32) && ! defined(__CYGWIN__)
_flushall();
#else
HDsystem ("sync");
HDsystem ("df >/dev/null");
#endif
Platforms tested:
Cygwin 1.5.11, VC 6.0 on XP.
Linux 2.4 (heping)
Solaris 2.7 (arabica)
Misc. update:
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Code cleanup
Description:
Remove obsolete support for Watcom C compiler.
Platforms tested:
None - too minor to require any.
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Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-)
Description:
Generally speaking, this is the "signed->unsigned" change to selections.
However, in the process of merging code back, things got stickier and stickier
until I ended up doing a big "sync the two branches up" operation. So... I
brought back all the "infrastructure" fixes from the development branch to the
release branch (which I think were actually making some improvement in
performance) as well as fixed several bugs which had been fixed in one branch,
but not the other.
I've also tagged the repository before making this checkin with the label
"before_signed_unsigned_changes".
Platforms tested:
FreeBSD 4.10 (sleipnir) w/parallel & fphdf5
FreeBSD 4.10 (sleipnir) w/threadsafe
FreeBSD 4.10 (sleipnir) w/backward compatibility
Solaris 2.7 (arabica) w/"purify options"
Solaris 2.8 (sol) w/FORTRAN & C++
AIX 5.x (copper) w/parallel & FORTRAN
IRIX64 6.5 (modi4) w/FORTRAN
Linux 2.4 (heping) w/FORTRAN & C++
Misc. update:
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Bug fixes & code cleanups
Description:
Backport MPI-I/O changes from the development branch to the release
branch in preparation for bringing Kent's collective chunk I/O changes back.
Removed last vestiges of FPHDF5 from this branch, as it was never working
here.
Various code cleanups & syncrontizations to better align with development
branch code and reduce diffs.
Regenerate dependencies.
Platforms tested:
FreeBSD 4.10 (sleipnir) w/parallel
IRIX64 6.5 (modi4)
h5committested
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Code cleanup
Description:
Reduce compiler warnings on SGI IRIX
Platforms tested:
FreeBSD 4.10 (sleipnir)
SGI IRIX6 (Cheryl's machine)
Too minor to require full h5committest
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Fix makefiles, dependencies & manifest after source file rename.
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Update depenvy files after h5repack import & add dependency file to h5repack
directory.
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h5committested.
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Bug fix
Description:
Fix a couple of 1.4 compat bogons that crept in.
Platforms tested:
FreeBSD 4.9 (sleipnir)
config not tested with h5committest
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Small bug fix
Description:
MPI_DOUBLE_PRECISION -> MPI_DOUBLE in C code.
Platforms tested:
Cray T3E (hubble)
Too minor to require h5committest
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Add metadata benchmark to the 1.6 branch
Description:
Port the metadata benchmark to the 1.6 branch, for LANL's use (mostly).
Platforms tested:
FreeBSD 4.9 (sleipnir) w/parallel
not tested with h5comittest, so it wasn't run
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Updated dependencies and tracing information
Platforms tested:
Not necessary.
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feature change, new feature.
Description:
Had the HDF5_PARAPREFIX default set to /tmp.
Changed it to null so that data files are created in current directory
by default.
Also added a code to print data filename used when debug level > 0.
Platforms tested:
Tested in modi4 parallel.
Misc. update:
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Code cleanup
Description:
Remove the fill-value option entirely, since the 1.5.x library's default
behavior is now the same as the 1.4.x behavior and also there is no
corresponding code for implementing fill-values with the POSIX or MPI-I/O tests.
Platforms tested:
FreeBSD 4.8 (sleipnir) w/parallel
too small to need h5committest
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Code cleanup
Description:
Change some variables that are keywords in C++ to non-keywords.
Platforms tested:
FreeBSD 4.8 (sleipnir)
too minor to require full h5committest
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minor improvment
Description:
corrected an omission in the usage help output.
Added more parameters checks.
Solution:
Platforms tested:
Only in modi4.
Misc. update:
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Bug Fix
Description:
On HP-UX platforms, the "open()" function needs to specify that the
file being created has permissions S_IRWXU, which means that it gives
read/write/execute permissions to the user who created the file (how
nice of it!).
Solution:
Added the S_IRWXU flag to the open() function call.
Platforms tested:
HP-UX 11
Arabica,
Modi4,
Verbena
Misc. update:
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Compatibility fix
Description:
The H5P[set|get]_fapl_mpiposix calls changed between v1.4.x and v1.5.x.
Solution:
Wrap them in the v1.4 backward compatibility #ifdefs and update tests, etc.
Platforms tested:
FreeBSD 4.8 (sleipnir) w/paralle & v1.4 compatibility
h5committest pointless
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"Bug fix"
Description:
This version is showing very slow HDF5 I/O write speeds (about 40%
of MPIO). It was because the library is writing fill values by
default. There is a no-fill option which set to FALSE. Changed
it to TRUE since MPIO and POSIX are not doing fill values.
This is just a stop gap fix since the better fix would be to
change the library to not write fill-values in this case.
Platforms tested:
modi4 parallel and LANL Q paralllel.
No h5committest test because it is very trivia.
Misc. update:
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Purpose:
Added sanity check that min number of processes be not greater
than max number of processes.
Platforms tested:
copper only since this is a very simple change.
Misc. update:
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Bug fix.
Description:
The default setting of max transfer size is larger than
the default setting of number of bytes per process, result
in complaints that Transfer size is too big.
Solution:
Cap the min and max transfer size with number of bytes per process.
Always cap min transfer size with the max xfer size.
Platforms tested:
Copper.
Misc. update:
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Code Improvements/Bug Fixes
Description:
Comparison of equality of a double/float variable to 0.0 is not
guaranteed to work and is bad practice.
Solution:
Test that the absolute value of the variable is < a very small
positive number.
Platforms tested:
Modi4 (Parallel & Fortran)
Verbena (C++ & Fortran)
Arabica (Fortran)
Misc. update:
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Bug Fix
Description:
The "mkstemp()" function isn't as portable as I hoped it would be (it
fails on Crays and other beasts).
Solution:
Removed and just use a fixed filename instead.
Platforms tested:
Linux
Solaris w/ zlib
Irix w/ zlib
Misc. update:
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Bug Fix
Description:
When I changed the H5P{set,get}_fapl_mpiposix functions to accept
another parameter, I didn't change it in these files.
Solution:
Added the new "use_gpfs" parameter.
Platforms tested:
Modi4 (only affects the parallel stuff, so no need for full testing).
Misc. update:
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Description: 1.4 compatibility for H5G_obj_t type and H5Zregister test.
Solution: use macro H5_WANT_H5_V1_4_COMPAT
Platforms tested: h5committest
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Update code
Description:
Chase changes for registering filters.
Solution:
Platforms tested:
FreeBSD 4.8 (sleipnir) w/szip
Linux 2.4 (sleipnir) w/szip
Solaris 2.7 (arabica) w/FORTRAN
IRIX64 6.5 (modi4) w/szip, FORTRAN & parallel
Misc. update:
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