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* [svn-r19408] In this revision the '/' after ${DESTDIR} wherever it occursLarry Knox2010-09-161-5/+15
| | | | | | | | | | | | | | | | | | | | has been removed. According to the official description of DESTDIR by Gnu at http://www.gnu.org/prep/standards/html_node/DESTDIR.html, DESTDIR is prepended to the normal and complete install path that it precedes for the purpose of installing in a temporary directory which is useful for building rpms and other packages. The '/' after ${DESTDIR} will be followed by another '/' at the beginning of the normal install path. When DESTDIR is empty the path then begins with '//', which is incorrect and causes problems at least for Cygwin. The change made in config/commence.am affects many Makefile.*s when bin/reconfigure is run. EXAMPLEDIRs had to be corrected individually. Also the scripts to run examples after they are installed have checks added to see that the fortran and c++ directories are present before trying to run the scripts in them. Tested with h5committest on amani, heiwa and jam.
* [svn-r19371] Updated autoconf to version 2.6.7, libtool to version 2.2.10, ↵Larry Knox2010-09-101-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | and m4 to version 1.4.14. Also added m4 directory for m4 macros according to autoconf suggestion. Tested with h5committest on amani, jam, and heiwa, and on linew. -This line, and those below, will be ignored-- M hdf5_1_8/test/Makefile.in A hdf5_1_8/m4 AM hdf5_1_8/m4/ltsugar.m4 AM hdf5_1_8/m4/libtool.m4 AM hdf5_1_8/m4/ltversion.m4 AM hdf5_1_8/m4/lt~obsolete.m4 AM hdf5_1_8/m4/ltoptions.m4 M hdf5_1_8/configure M hdf5_1_8/Makefile.in M hdf5_1_8/testpar/Makefile.in M hdf5_1_8/configure.in M hdf5_1_8/src/Makefile.in M hdf5_1_8/tools/Makefile.in M hdf5_1_8/tools/misc/Makefile.in M hdf5_1_8/tools/h5dump/Makefile.in M hdf5_1_8/tools/h5repack/Makefile.in M hdf5_1_8/tools/h5jam/Makefile.in M hdf5_1_8/tools/h5diff/Makefile.in M hdf5_1_8/tools/lib/Makefile.in M hdf5_1_8/tools/h5copy/Makefile.in M hdf5_1_8/tools/h5import/Makefile.in M hdf5_1_8/tools/h5stat/Makefile.in M hdf5_1_8/tools/h5ls/Makefile.in M hdf5_1_8/hl/test/Makefile.in M hdf5_1_8/hl/tools/Makefile.in M hdf5_1_8/hl/tools/gif2h5/Makefile.in M hdf5_1_8/hl/Makefile.in M hdf5_1_8/hl/src/Makefile.in M hdf5_1_8/hl/c++/test/Makefile.in M hdf5_1_8/hl/c++/Makefile.in M hdf5_1_8/hl/c++/src/Makefile.in M hdf5_1_8/hl/c++/examples/Makefile.in M hdf5_1_8/hl/fortran/test/Makefile.in M hdf5_1_8/hl/fortran/Makefile.in M hdf5_1_8/hl/fortran/src/Makefile.in M hdf5_1_8/hl/fortran/examples/Makefile.in M hdf5_1_8/hl/examples/Makefile.in M hdf5_1_8/config/commence.am M hdf5_1_8/MANIFEST M hdf5_1_8/c++/test/Makefile.in M hdf5_1_8/c++/Makefile.in M hdf5_1_8/c++/src/Makefile.in M hdf5_1_8/c++/examples/Makefile.in M hdf5_1_8/bin/ltmain.sh M hdf5_1_8/bin/reconfigure M hdf5_1_8/perform/Makefile.in M hdf5_1_8/fortran/test/Makefile.in M hdf5_1_8/fortran/testpar/Makefile.in M hdf5_1_8/fortran/Makefile.in M hdf5_1_8/fortran/src/Makefile.in M hdf5_1_8/fortran/examples/Makefile.in M hdf5_1_8/aclocal.m4 M hdf5_1_8/examples/Makefile.in
* [svn-r19362] Move Windows specific compile and link flags to macrosAllen Byrne2010-09-091-90/+9
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* [svn-r19326] Added parallel build commands.Allen Byrne2010-08-311-2/+66
| | | | | | | | Corrected use/name of source folder aliases. Duplicated FindMPI.cmake so that non-c++ compiler is found first (recommemded commands did not work). Bring r19325 from trunk Tested: local linux with mpich
* [svn-r19216] Bug 1986, error1.Albert Cheng2010-08-101-1/+2
| | | | | | | | | It is an error to use the condition H5_HAVE_FSEEK64 to control the definition of HDlseek. It caused errors in AIX where lseek64 is available. Replaced it with H5_HAVE_LSEEK64. Also added the missing HDstrcasecmp macro. Tested: AIX using default and --disable-largefile.
* [svn-r19036] Added executable Linker Flag for MSVC static builds: ↵Allen Byrne2010-06-291-0/+60
| | | | | | | | /NODEFAULTLIB:MSVCRT Added VERSION vars for inclusion into auto snapshot version update script Tested windows
* [svn-r18964] Windows use of VC_EXTRALEAN no longer did anything. It has been ↵Allen Byrne2010-06-032-8/+1
| | | | | | | | replaced by WIN32_LEAN_AND_MEAN macro. This was the cause of a define conflict causing the use of grp1 and grp2 to be replaced with constants in the h5dumpgentest.c file. This also affected the use of the #include <winsock.h> needed by gethostname. The new include: winsock2.h has been added to h5private.h and either removed or updated in the other files. Tested: Windows
* [svn-r18920] Description:Quincey Koziol2010-05-271-15/+3
| | | | | | | | | | | | | | | | | | Bring r18917 from trunk to 1.8 branch: Bring r18911 (plus some adaptions to match the code on the trunk) from the metadata journaling "merging" branch to the trunk: More general changes to align trunk with eventual changes from metadata journaling branch. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode
* [svn-r18836] Added code to config files, libhdf5.settings.in and ↵Larry Knox2010-05-171-0/+2
| | | | | | configure.in to add compiler version information for fortran and C++ in the settings file and the configure output for our common compilers on linux, solaris, and mac(gnu only). Tested: amani, jam, linew (h5committest) and with configure on these machines and tejeda.
* [svn-r18779] Add ${DESTDIR} to scripts and Makefiles so that make ↵Larry Knox2010-05-121-5/+5
| | | | | | DESTDIR=<install directory> install, installcheck and uninstall is supported for installing examples, since they are now installed as part of make install. This was necessary for rpmbuilds, but should also be supported otherwise. Tested: amani, jam, linew with committest, rpmbuild on jam and amani.
* [svn-r18773] Add files to support building library with CMakeAllen Byrne2010-05-121-0/+74
| | | | Tested: Local linux
* [svn-r18757] Enable tools lib to be built as a dll on windows. Added two ↵Allen Byrne2010-05-112-12/+15
| | | | | | | | | | get/set functions for progname and d_status. Also add windows import/export declarations to functions. Updated windows - H5pubconf.h for packed bits function Tested: Windows, linux
* [svn-r18710] Purpose:Mike McGreevy2010-05-051-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | Improve configure's large-file support control. Description: Modified configure to now attempt to add defines necessary for supporting largefiles on all systems, instead of solely on linux. This is in response to user requests to enable largefile support on Solaris by default, as well as to give extra control on AIX (instead of just jamming the necessary flag into the config files). The old --enable-linux-lfs flag is being deprecated in favor of the --enable-largefile flag (enabled by default), which can be used on all platforms. --disable-linux-lfs can still be used to disable largefile support (on linux) when the --enable-largefile flag is not specified. On systems where large files cannot be supported in this manner, configure will report as such. Tested: h5committest AIX (NCSA's blue_print machine) duty, liberty, and linew.
* [svn-r18701] ID 1853:Albert Cheng2010-05-041-0/+1
| | | | | | | | Added the configure option --enable-h5dump-packed-bits for the h5dump optional feature. Tested: Jam (default and --disable-h5dump-packed-bits).
* [svn-r18580] Purpose:Mike McGreevy2010-04-151-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Autotool Upgrade / Libtool Bug Fix Description: Updated autotools referenced in bin/reconfigure as follows: Autoconf 2.64 --> Autoconf 2.65 Automake 1.11 --> Automake 1.11.1 Libtool 2.2.6a --> Libtool 2.2.6b-mcg The referenced libtool version is a custom version of 2.2.6b. It has been tweaked to fix a bug in libtool that occurs when using PGI 10.0 compilers. A check incorrectly categorizes the C++ compiler as version 1.0 instead of 10.0, and the link line is subsequently set up incorrectly and fails to compile. A patch has been made available and will be included in the next release of libtool, but in the meantime I've applied the patch to a custom installation as indicated above. This bin/reconfigure now references the custom installation, and the resulting configure script will correctly categorize the PGI 10.0 C++ compiler. Ran bin/reconfigure to regenerate configure and makefiles. Tested: jam and amani with PGI 10.0 compilers. h5committest
* [svn-r18106] bug 1673:Albert Cheng2010-01-121-4/+4
| | | | | | | | | | | | | | The mixed use of RUNTEST (original) and RUNTESTS (new) caused confusion. E.g., the timings in test/ was still using the old $RUNTEST. It made more sense to use $RUNTEST which is used by the dejagnu feature of automake. So, I changed all $RUNTEST or $RUNTESTS to $RUNEXEC. config/commence.am & config/conclude.am are the two files that got changes. Also fixed an error in test/Makefile.am. The rest are changed by bin/reconfigure. Tested: h5committested.
* [svn-r17925] Description:Quincey Koziol2009-11-231-1/+4
| | | | | | | | | | | | | | | | | Bring r17924 from trunk to 1.8 branch: Add detection for POSIX lstat() routine to configure script (mostly for non-UNIX/Linux machines) and add macro wrapper for it. Alphabetatize the system/library calls we test for, to make them easier to read. Removed the sigaction() detection & macro wrappers, since it's not used by the distribution currently. Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5committested on trunk)
* [svn-r17717] Cosmetic change to use exit(EXIT_FAILURE) instead of exit(1).Albert Cheng2009-10-212-4/+4
| | | | Tested: jam-pp.
* [svn-r17645] Purpose:Mike McGreevy2009-10-152-11/+18
| | | | | | | | | | | | | | | Merge from Trunk Description: Merging all of my CFLAGS-related changes from trunk to 1.8 This includes revision #s: 17616, 17625, 17627, 17639, and 17643. Tested: h5committest and some additional checks on our FreeBSD as well as NCSA's machines.
* [svn-r17607] ode Cleanup:Albert Cheng2009-10-071-5/+0
| | | | | | | | TFLOPS machine has retired long ago. Removed all code specific for its support. Test: h5committested.
* [svn-r17441] Purpose:Mike McGreevy2009-08-312-2/+16
| | | | | | | | | | | | | | | | | | | | | Merge from trunk Description: Merged revisions 17228 and 17440 from trunk to 1.8 Specifically, this brings support of --enable-static-exec flag into 1.8 Tested: Manually on jam, linew, smirom, liberty, plus h5committest. Currently, there is no automatic regression test that exists due to portability issues. Behavior is both different and undefined on certain systems (and while 'nm' command seems to exist on all machines, behavior is confirmed to be different on Mac, possibly others). Solution will be to set up some sort of framework in daily tests to build statically, remove shared paths, and verify executables can function.
* [svn-r17439] Purpose:Mike McGreevy2009-08-311-49/+97
| | | | | | | | | | | | | | | | | | | | | | Updating autotools Description: Bring revisions 17345 and 17357 from trunk to 1.8, specifically: - Automake upgraded to 1.11 - Autoconf upgraded to 2.64 - bin/reconfigure script edited to use new versions (on jam), and run to generate new configure script and Makefile.in's. - configure.in script edited to add "_cv_" to all AC_CACHE_VAL strings (in order to comply with new autoconf standard). - bin/install-sh script replaced with new version as provided by automake. Tested: - All issues on trunk were resolved, so only tested on jam and linew. Any other outliers should be caught by daily tests.
* [svn-r17266] Description:Quincey Koziol2009-07-301-1/+1
| | | | | | | | | Clean up various compiler warnings from IRIX64 build Tested on: Mac OS X/32 (amazon) debug & production (yes, I know it's not an IRIX64 system :-) Too minor to require h5committest
* [svn-r17043] Undo the addition of generated files, mistakenly added by lack ↵Allen Byrne2009-06-1227-2148/+0
| | | | of attention.
* [svn-r17042] Updated perf_serial test to work on windows. Bring back from trunk.Allen Byrne2009-06-1231-229/+2383
| | | | | Tested: Windows
* [svn-r16808] Purpose: Fix bug 1533Neil Fortner2009-04-201-1/+1
| | | | | | | | | | | Description: Previously, there was no versioning for H5Z_class_t. This prevented applications written for 1.6 using custom filters from being able to use the 1.8 library. There is now an H5Z_class1_t and H5Z_class2_t to enable compatibility. H5Zregister is *not* versioned, it determines which version of the struct has been passed in by the value of the first field (id or version, both are ints). Tested: jam, linew, smirom (h5committest), jam (--with-default-api-version=v16)
* [svn-r16793] Description:Mike McGreevy2009-04-201-4/+4
| | | | | | | | | | | | - Updated bin/reconfigure to use latest version of automake (1.10.2). Regenerated Makefile.in's by running bin/reconfigure. - Added libtool version numbers to c++, fortran, hl, hl c++, and hl fortran libraries. Tested: jam, liberty, smirom
* [svn-r16566] Description:Quincey Koziol2009-03-115-449/+404
| | | | | | | | Bring r16560 back from trunk. Tested on: Mac OS X/32 10.5.6 (amazon) debug & production (Following up with tests on more platforms)
* [svn-r16562] Purpose:Mike McGreevy2009-03-101-3/+3
| | | | | | | | | | | | | | | | | | Bug Fix Description: Fixing BZ #1381. The --includedir=DIR configure option, which is used to spceify installation location of C header files, did not work correctly as the path was hard-coded into config/commence.am. I'm presuming this is because an older version of automake didn't know where to put C header files. In any case, removing this line now defaults the includedir to the same directory that it is currently hard-coded to, and also fixes the configure flag which allows for customization of this value. Tested: jam, liberty
* [svn-r16519] merge 16518 from trunkPedro Vicente Nunes2009-02-261-0/+1
| | | | | | have 2 expected outputs for 2 h5ls runs depending if run on a big or little endian machine. Configure.in was modified to export a variable carrying endianess information to testh5ls.sh. This script then compares the current run with 2 expected outputs, one for a big-endian machine (linew was used to generate the output), other for little endian (jam was used to generate the output) the way h5ls prints types, it starts searching for NATIVE types first. One solution would be h5ls not to detect these native types, using for example the same print datatype function that h5dump does, that would make the output look the same on all platforms ("32-bit little-endian integer" would be printed instead). Drawback, this "native" information would not be available. Other solution is to have not one but 2 expected outputs and make the shell script detect the endianess and compare with one output or other tested: jam, linew
* [svn-r16490] Fixed bug #1459 by eliminating the macro long_long and ↵Allen Byrne2009-02-186-93/+56
| | | | | | | | | replacing all instances with long long. Tested: h5comittest fedora 10 x64 XP32, VNET
* [svn-r16341] Description:Frank Baker2009-01-221-1/+1
| | | | | | Changed 'THG' to 'The HDF Group' in various HDF5 source files, most of which are <subdirectory>/COPYING. -- Closes Bugzilla entry 1403.
* [svn-r16172] Code clean up.Albert Cheng2008-12-091-13/+12
| | | | | | | Function get_unique_name() had potential string overflow problem. Fixed. Also removed some unused macros. Tested by h5committest.
* [svn-r16168] Bug fix: 1089Albert Cheng2008-12-091-3/+3
| | | | | | | | | | | | Description: One open() call with O_CREAT flag did not have the third required argument. Solution: Added the right third argument. Also changed all open() calls to HDopen macros for more portable coding. Tested: h5committested.
* [svn-r15956] Revised the help page of h5perf.Christian Chilan2008-10-261-27/+49
| | | | Tested on kagiso.
* [svn-r15898] Purpose: Bug FixMike McGreevy2008-10-171-6/+1
| | | | | | | | | | | | | | | Description: Libtool wasn't working on linew because the script was not working with the Solaris Bourne shell. Libtool has built- in detection to ensure that it uses an appropriate shell, but our config/commence.am was hard coding this shell to be /bin/sh. Removing this line allows the shell to be picked up by configure, thus allowing libtool to use the correct shell on linew (bash). This was initially added to correct for a problem on an old machine (janus), so shoudn't be needed for machines we currently support. Tested: full make check install on kagiso and linew, compile only on smirom, duty, and liberty.
* [svn-r15881] Purpose: Bug Fixes, Libtool UpgradeMike McGreevy2008-10-151-0/+5
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: 1) configure now sets LD_LIBRARY_PATH before checking for presence of SZIP encoder, so user does not need to set this. The path is then saved and sent to Makefiles, and used when "make check-install" is invoked, so user doesn't need to set this manually. 2) Upgraded libtool to version 2.2.6a 3) Rearranged tools build order as h5dump depends on existence of h5diff and h5import. Since h5dump is a sister directory as opposed to a parent of either, it doesn't know about the build rules of these tools, so setting any sort of explicit dependency confuses automake as it won't know how to build the tools. Instead, setting CONFIG = ordered forces an in-order traversal of each tools subdirectory. (without it will also traverse in order by default, but this should prevent gmake's -j option from jumping ahead as well). 'make check install' should now be able to be invoked after 'configure' without causing a dependency failure. 4) Removed H5_HAVE_LARGE_HSIZET macro from vms/src/h5pubconf.h, as this macro has now been out of the code for some time. (vms pubconf needs to be updated manually, which is why it was still hanging around). Tested: kagiso, smirom, liberty Note: h5diff looks to be causing failures in h5copy and h5dump tools tests, though these were present before any of my changes. My changes only affect build order and configuration setup, and shouldn't prevent fixes for these failures coming in after this checkin. Other than these, tests pass fine.
* [svn-r15831] Modified the display of the accumulated times taken to open and ↵Christian Chilan2008-10-091-1/+1
| | | | | | close files. Tested on kagiso.
* [svn-r15809] Some test produced files were not cleaned by "make clean".Albert Cheng2008-10-082-2/+2
| | | | | | Added them to the clean list. Tested: kagiso, serial and parallel.
* [svn-r15771] Added feature to display file open and close times.Christian Chilan2008-10-031-4/+39
| | | | Tested on kagiso and cobalt.
* [svn-r15666] Bug fix: (ID 1157)Albert Cheng2008-09-191-2/+4
| | | | | | | | | | | | | | | | | | | Description: Program would crash, complaining MPI calls were invoked after MPI_Finalize() has occurred. Previously, H5close() before MPI_Finalize() would remove the crash. Solution: It turned out that two H5 property objects (mpio_pl and acc_tpl) were not closed before MPI_Finalize(). In the at_exit code, HDF5 library attempted to close them by releasing the MPI Communicators in them too. That was the error. Adding code to close them properly before MPI_Finalize() took care things. Tested: Only in kagiso parallel. Did not run h5committest since kagiso would have been the one running parallel test. This part of code would not be compiled at all in non-phdf5 mode.
* [svn-r15654] Changed the absolute path of the data file to a relative path.Christian Chilan2008-09-181-3/+7
| | | | Tested on kagiso, smirom, and linew.
* [svn-r15648] Included macros for portability of h5perf code among HDF5 versions.Christian Chilan2008-09-171-13/+35
| | | | Tested on kagiso, abe, and cobalt.
* [svn-r15629] Description:Quincey Koziol2008-09-163-68/+68
| | | | | | | | | | | | | Remove trailing whitespace from C/C++ source files, with the following script: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Tested on: Mac OS X/32 10.5.5 (amazon) No need for h5committest, just whitespace changes...
* [svn-r15581] Added script to build h5perf_serial in standalone mode.Christian Chilan2008-09-021-0/+28
| | | | Tested on kagiso, smirom, and linew.
* [svn-r15562] Added support for serial prefix HDF5_PREFIX.Christian Chilan2008-08-292-20/+14
| | | | Tested on kagiso, smirom, and linew.
* [svn-r15398] Added declaration of functions needed for standalone building. Christian Chilan2008-07-231-17/+24
| | | | Tested on kagiso and abe.
* [svn-r15384] Major update of h5perf files including bug fixes and extensions.Christian Chilan2008-07-172-2141/+2378
| | | | Tested on kagiso and abe.
* [svn-r15180] Change copyright notice to THG only.Christian Chilan2008-06-097-7/+0
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* [svn-r15160] Purpose: Separate Windows function macro definitions to win32defs.hScott Wegner2008-06-051-4/+4
| | | | | | | | | | | | | | Description: In library code, we try not to use system calls directly, but instead use the HD{function} macro instead. This way, we can map special versions of the call on particular systems. Previously, it was all done in H5private.h. However, in an effort to clean up platform-specific definitions, we move all of the Windows macros into a separate file, win32defs.h. This way, we can use the non-Posix versions that Visual Studio sends warnings about. Some macros are set specifically in the platform-specific header files. Then, any macros left unset will be set by the "default" implementation in H5private.h. This checkin also cleans up various source files to use the HD* macros when possible. Tested: VS2005 on WinXP VS.NET on WinXP h5committest (kagiso, linew, smirom)
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