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* [svn-r24072] Merge trunk cmake changes to 1.8 branch. Allen Byrne2013-08-262-61/+62
| | | | | | | Also add default switch blocks to h5import. Merge h5dump any_path option from trunk. Tested: local linux
* [svn-r24039] Purpose:Jonathan Kim2013-08-203-7/+80
| | | | | | | | Warning fixes (Jonathan and Peter) from coverity fix. merge from r23986 trunk. Tested: jam-pp (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE)
* [svn-r24021] Description:Quincey Koziol2013-08-181-10/+10
| | | | | | | | | | Bring r24020 from trunk to 1.8 branch: Clean up compiler warnings Tested on: Mac OSX/64 10.8.4 (amazon) w/C++ & FORTRAN (too minor to require h5committest)
* [svn-r23869] HDFFV-8302: replace (v)snprintf with _(v)snprintf for windows. ↵Allen Byrne2013-07-082-77/+96
| | | | | | | | Merge from trunk along with other windows functions and HD prefix corrections. HDFFV-8394: Add cmake code to package examples Tested: local linux
* [svn-r23868] bring r 23862 from trunk:Mohamad Chaarawi2013-07-084-49/+49
| | | | | Change printfs in perform output and h5dump to prevent overflow. This fixes: https://jira.hdfgroup.uiuc.edu/browse/HDFFV-8450
* [svn-r23809] revert printf format changes to do a better solution.Mohamad Chaarawi2013-06-244-32/+32
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* [svn-r23808] merge 23801 from trunk.Mohamad Chaarawi2013-06-244-32/+32
| | | | | | | Change printfs in perform output for long long to use %lld instead of %Hd. The later is for shorts. This fixes: https://jira.hdfgroup.uiuc.edu/browse/HDFFV-8450 Tested on Jam.
* [svn-r23771] HDFFV-8434,-8437,-8445,-8447,-8461: Merge changes from Trunk.Allen Byrne2013-06-141-0/+10
| | | | Tested: local linux
* [svn-r23324] Snapshot version 1.8 release 11 (snap11)HDF Tester2013-03-041-1/+1
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* [svn-r23211] Merge trunk CMake changes for minimum cmake version of 2.8.10. ↵Allen Byrne2013-01-311-1/+1
| | | | | | This was prompted by HDFFV-8227, OS X requires latest version of cmake for proper support. Tested: local linux
* [svn-r22850] Bug fix: HDFFV-8156Albert Cheng2012-10-022-21/+13
| | | | | | | | | benchpar.c is compiled when configure --enable-build-all --enable-paralllel. But it failed to compile. It is decided to retire or move it to example. I removed it from the PARA_BUILD_ALL list so that --enable-build-all will not fail. The program file still need to be moved. Tested: Koala using --enable-build-all --enable-parallel.
* [svn-r22801] Updated for the removal of mpi-perf.c.Albert Cheng2012-09-221-15/+0
| | | | | | | Copied from the trunk version. Tested: Don't know how to test. assume if it works for trunk, it will work for v18.
* [svn-r22796] HDFFV-8110: Removed mpi-perf.c which was given with permission ↵Albert Cheng2012-09-213-387/+5
| | | | | | | | | | | | | | | | | | | | | to freely distribute by the author. It was an example program showing how to measure parallel IO speed. Since then, we have created h5perf to do I/O performanace measurement. This example is not needed any more. mpi-perf.c: Removed. Makefile.am: Makefile.in: Removed the entry of mpi-perf.c so that "configure --enable-build-all ..." will not build it. MANIFEST: Updated. The change is trivial that I got permission to skip the code review step. Tested: h5committest plus "--enable-parallel --enable-build-all" in koala.
* [svn-r22788] HDFFV-8153: Pull POSIX_C_SOURCE define out to separate ↵Allen Byrne2012-09-191-0/+5
| | | | | | variable. Use ADD_DEFINITIONS (${HDF5_EXTRA_C_FLAGS}) in non-fortran CMakeLists.txt folders Tested: local
* [svn-r22724] Convert tests to *.sh.in.Allen Byrne2012-08-281-15/+19
| | | | | | | | Convert configure.in to configure.ac. Align TESTS usage with autotools convention. Update all references from configure.in to configure.ac Tested: h5committest
* [svn-r22711] Updated autotools: autoconf 2.69, automake 1.12.3, m4 1.4.16, ↵Larry Knox2012-08-231-45/+98
| | | | | | libtool 2.4.2 Tested THG machines.
* [svn-r22451] Brought cmake configuration / configure changes from Trunk.Allen Byrne2012-06-112-24/+28
| | | | Tested jam, local linux
* [svn-r22148] Removed incorrect executable svn properties from text, source, ↵Dana Robinson2012-03-261-0/+0
| | | | in, and HDF5 files.
* [svn-r22013] HDFFV-7560:Allen Byrne2012-03-0211-104/+120
| | | | | | | | | | Merge 1.8 and h5dump/tools and tests based on tools library from trunk. Reduced warnings. HDFFV-7949: Remove duplicated functions in h5ls Tested: local linux,h5committest
* [svn-r21805] Update CMake Required version in all folders to match current ↵Allen Byrne2011-12-051-1/+1
| | | | standard 2.8.6
* [svn-r21717] Update cmake configurationAllen Byrne2011-11-041-0/+11
| | | | | | | Update cmake to generate source folders in VS Brought parallel changes from trunk Tested: local linux
* [svn-r21513] Add HDprefix and change when pio_timer.h is includedAllen Byrne2011-10-112-6/+6
| | | | Tested
* [svn-r21421] Merged the Fortran 2003 changes from the trunk into the 1.8 ↵Scot Breitenfeld2011-09-271-0/+3
| | | | | | | | | | | branch, used: svn merge -r 20506:21414 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran Tested: jam (gnu, intel, pgi compilers) Also merged effected non-Fortran files: svn merge -r21247:r21248 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/src/libhdf5.settings.in
* [svn-r21376] JIRA-HDFFV-2748: Relplace WIN32 macros in source. New ↵Allen Byrne2011-09-125-204/+213
| | | | | | | | H5_HAVE_WIN32_API and H5_HAVE_VISUAL_STUDIO defines only need to be set on windows. Autotools configure is not affected. Trunk passed for a week and cmake branch has been in place > 3 weeks. Tested: local linux
* [svn-r21365] Related files to files from HDF5-33 review - all changes ran ↵Allen Byrne2011-09-063-57/+77
| | | | | | | | correctly in trunk. Changes have been tested in cmake branch. #ifdef around include <unistd.h> and <time.h> Tested: local linux
* [svn-r21363] files from HDF5-33 review - all changes ran correctly in trunk. ↵Allen Byrne2011-09-062-49/+55
| | | | | | Changes have been tested in cmake branch. Tested: local linux
* [svn-r21336] Synchronize cmake files with tested commits from trunkAllen Byrne2011-08-301-19/+23
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* [svn-r21044] Purpose:Mike McGreevy2011-06-281-1/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Fix HDFFV-7592 "Remove PACKEDBITS option from autotools files" Description: The code for h5dump's packed bits feature was conditionally compiled in via this option during its 'beta' release in 1.8.5. Now that the feature is fully supported, h5dump has since been changed to always compile the packed bits code (having removed the #ifdef H5_HAVE_H5DUMP_PACKED_BITS checks), so this option in configure is no longer needed. This commit removes the --enable-h5dump-packed-bits configure option, including the help summary from './configure --help' and the libhdf5.settings output summary, the PACKED_BITS Makefile variable, and the definition of H5_HAVE_H5DUMP_PACKED_BITS define in appropriate pubconf header files (which has already been removed from use in source code as of r20722). Note that this option was never added to the trunk, thus this commit only need occur on the 1.8 branch. Tested: - Configure output, help, & summary verified on jam - h5committested
* [svn-r20893] Description:Quincey Koziol2011-05-231-2/+5
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r20885 from trunk to 1.8 branch: r20340: Address coverity issue 248. Set freed pointer to NULL if realloc fails, then check for NULL before attempting to close array of handles stored in memory addressed by pointer. r20341: Added initialization udata.path = NULL; udata.visited = NULL; to prevent unintialized use after done: label. Do C-style initialization AFTER all variable definitions. r20342: Fix valgrind error in H5DUMP-XML-tall.h5 r20343: Addressed Coverity issue 591 - check the return value of H5S_SELECT_ITER_RELEASE. r20344: Added initialization udata.path = NULL; to prevent uninitialized used after done: label r20347: Purpose: Fix memory leak in overhead.c Description: Fixed leak in test() in overhead.c where array "had" was never freed. r20348: Addressed Coverity issue 705 - added prototype for resize_configs_are_equal to cache_common.h. r20392: Purpose: Fix coverity issues 1677 and 1678 Description: Added return value checking for 4 funciton calls in H5tools_get_symlink_info(). r20394: Purpose: Fix coverity issues 1674 and 1675 Description: Modified H5Epush2() and H5E_printf_stack() to keep track of whether va_start() has been called, and to call va_end() at the end if so. r20395: Should be H5MM_calloc(count * sizeof(void*)). Fixed --gh r20396: Should be H5MM_calloc(count * sizeof(void*)). Fixed. --gh Tested on: Mac OSX/32 10.6.7 (amazon) w/debug & production (h5committested on branch)
* [svn-r20674] Eliminate memory buffer errors, Allen Byrne2011-04-282-160/+164
| | | | | | | overhead - add free to successful path. zip_perf - filename handling needed inits to NULL and free Tested: local linux
* [svn-r20671] Fixed file name handling with char pointer incorrectly causing ↵Jonathan Kim2011-04-281-4/+5
| | | | | | crash. (Reviewed by ADB)
* [svn-r20525] Description:Mike McGreevy2011-04-151-27/+52
| | | | | | | | Merge revisions 20475, 20502, and 20504 from trunk to 1.8 branch. Tested: Tested on jam, fred, bangan (CYGWIN), and h5committested.
* [svn-r20336] Remove unused windows defines. Add _CONSOLE to windows definitions.Allen Byrne2011-03-251-8/+0
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* [svn-r20314] Changed winsock.h guard to sync with trunkAllen Byrne2011-03-241-2/+2
| | | | Tested: windows
* [svn-r20313] Change incorrect use of "struct stat" to use "h5_stat_t". Allen Byrne2011-03-242-54/+64
| | | | | | | Also removed includes from top of file - they are included with proper config checks in h5private.h. Changed name of Windows only gettimeofday function to avoid a define loop according to VS2008 Tested: local linux, windows
* [svn-r20157] Bring CMake changes to branch up to r20156 from trunkAllen Byrne2011-02-251-11/+11
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* [svn-r20049] Description:Quincey Koziol2011-02-052-82/+84
| | | | | | | | | | | | | | | | | | Bring r20048 from trunk to 1.8 branch: Bring Coverity changes back to trunk: r19733: Fix memory leak in h5perf_serial. Global buffer "buffer2" was allocated at the beginning of do_sio() but never freed. Added call to free() at end of do_sio(). r19734: Fix memory leak in iopipe. Buffer "the_data" was allocated at the beginning of main() but never freed. Added call to free() at end of main(). Tested on: Coverity branch in daily tests & Mac
* [svn-r20020] Bug 2019: h5perf or h5perf_serial is removed twice. Some ↵Albert Cheng2011-01-282-20/+30
| | | | | | | | | | | | | | | | | | | | | | | | systems like AIX do not like it as it may get into a racing condition when "gmake -j N" is used-- two "rm" commands were trying to remove the same file. Solution: Rearranged the Makefile.am so that h5perf or h5perf_serial are built only once, that is through bin_PROGRAMS only. Bug 2135: h5perf_serial is not installed in --enable-parallel build. It was because in parallel build, h5perf_serial is not was not in the bin_PROGRAMS list but it was still being built and tested. Solution: Rearranged the Makefile.am code so that h5perf_serial is installed too. (It is easier to make cleaner code to install it than to build and test h5perf_serial but not test it.) Tested: Jam, both serial and parallel. Did not run h5committest because the changes are in perform/ directory only and I think Jam has given the changes in Makefile a complete test already.
* [svn-r19906] Windows: Correct how fortran links in CRT library. Also correct ↵Allen Byrne2011-01-041-11/+11
| | | | | | macro use for checking libtype. Tested: Windows
* [svn-r19898] Remove use of /MT compile flag for building static libs and ↵Allen Byrne2010-12-301-11/+0
| | | | programs. Added BUILT_AS_STATIC_LIBRARY define to set the windows import/export defines correctly for static libraries.
* [svn-r19883] Corrected time_of_day define configuration, found during ↵Allen Byrne2010-12-131-0/+36
| | | | | | parallel CMake build. Tested: local linux, fix confirmed by user
* [svn-r19862] Updated libtool to version 2.4, autoconf to version 2.68, and ↵Larry Knox2010-12-011-0/+3
| | | | | | m4 to version 1.4.15. Tested with h5committest on amani, jam and heiwa.
* [svn-r19797] Bug 2091: remove all Metraowerks compiler code bracheted by ↵Albert Cheng2010-11-175-94/+19
| | | | | | | | __MWERKS__. Metraowerks compiler is no more. Make the code cleaner. Tested: H5committest plus jam serial.
* [svn-r19688] Spelling mistake in TARGET_WIN_PROPERTIES broke cmake configurationAllen Byrne2010-10-281-1/+1
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* [svn-r19528] Add clear generated objects commands to test blocks.Allen Byrne2010-10-061-0/+15
| | | | | | | | Add configurefile command to copy CTestCustom to build folder. Bring r19527 back from trunk Tested: local linux
* [svn-r19408] In this revision the '/' after ${DESTDIR} wherever it occursLarry Knox2010-09-161-5/+15
| | | | | | | | | | | | | | | | | | | | has been removed. According to the official description of DESTDIR by Gnu at http://www.gnu.org/prep/standards/html_node/DESTDIR.html, DESTDIR is prepended to the normal and complete install path that it precedes for the purpose of installing in a temporary directory which is useful for building rpms and other packages. The '/' after ${DESTDIR} will be followed by another '/' at the beginning of the normal install path. When DESTDIR is empty the path then begins with '//', which is incorrect and causes problems at least for Cygwin. The change made in config/commence.am affects many Makefile.*s when bin/reconfigure is run. EXAMPLEDIRs had to be corrected individually. Also the scripts to run examples after they are installed have checks added to see that the fortran and c++ directories are present before trying to run the scripts in them. Tested with h5committest on amani, heiwa and jam.
* [svn-r19371] Updated autoconf to version 2.6.7, libtool to version 2.2.10, ↵Larry Knox2010-09-101-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | and m4 to version 1.4.14. Also added m4 directory for m4 macros according to autoconf suggestion. Tested with h5committest on amani, jam, and heiwa, and on linew. -This line, and those below, will be ignored-- M hdf5_1_8/test/Makefile.in A hdf5_1_8/m4 AM hdf5_1_8/m4/ltsugar.m4 AM hdf5_1_8/m4/libtool.m4 AM hdf5_1_8/m4/ltversion.m4 AM hdf5_1_8/m4/lt~obsolete.m4 AM hdf5_1_8/m4/ltoptions.m4 M hdf5_1_8/configure M hdf5_1_8/Makefile.in M hdf5_1_8/testpar/Makefile.in M hdf5_1_8/configure.in M hdf5_1_8/src/Makefile.in M hdf5_1_8/tools/Makefile.in M hdf5_1_8/tools/misc/Makefile.in M hdf5_1_8/tools/h5dump/Makefile.in M hdf5_1_8/tools/h5repack/Makefile.in M hdf5_1_8/tools/h5jam/Makefile.in M hdf5_1_8/tools/h5diff/Makefile.in M hdf5_1_8/tools/lib/Makefile.in M hdf5_1_8/tools/h5copy/Makefile.in M hdf5_1_8/tools/h5import/Makefile.in M hdf5_1_8/tools/h5stat/Makefile.in M hdf5_1_8/tools/h5ls/Makefile.in M hdf5_1_8/hl/test/Makefile.in M hdf5_1_8/hl/tools/Makefile.in M hdf5_1_8/hl/tools/gif2h5/Makefile.in M hdf5_1_8/hl/Makefile.in M hdf5_1_8/hl/src/Makefile.in M hdf5_1_8/hl/c++/test/Makefile.in M hdf5_1_8/hl/c++/Makefile.in M hdf5_1_8/hl/c++/src/Makefile.in M hdf5_1_8/hl/c++/examples/Makefile.in M hdf5_1_8/hl/fortran/test/Makefile.in M hdf5_1_8/hl/fortran/Makefile.in M hdf5_1_8/hl/fortran/src/Makefile.in M hdf5_1_8/hl/fortran/examples/Makefile.in M hdf5_1_8/hl/examples/Makefile.in M hdf5_1_8/config/commence.am M hdf5_1_8/MANIFEST M hdf5_1_8/c++/test/Makefile.in M hdf5_1_8/c++/Makefile.in M hdf5_1_8/c++/src/Makefile.in M hdf5_1_8/c++/examples/Makefile.in M hdf5_1_8/bin/ltmain.sh M hdf5_1_8/bin/reconfigure M hdf5_1_8/perform/Makefile.in M hdf5_1_8/fortran/test/Makefile.in M hdf5_1_8/fortran/testpar/Makefile.in M hdf5_1_8/fortran/Makefile.in M hdf5_1_8/fortran/src/Makefile.in M hdf5_1_8/fortran/examples/Makefile.in M hdf5_1_8/aclocal.m4 M hdf5_1_8/examples/Makefile.in
* [svn-r19362] Move Windows specific compile and link flags to macrosAllen Byrne2010-09-091-90/+9
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* [svn-r19326] Added parallel build commands.Allen Byrne2010-08-311-2/+66
| | | | | | | | Corrected use/name of source folder aliases. Duplicated FindMPI.cmake so that non-c++ compiler is found first (recommemded commands did not work). Bring r19325 from trunk Tested: local linux with mpich
* [svn-r19216] Bug 1986, error1.Albert Cheng2010-08-101-1/+2
| | | | | | | | | It is an error to use the condition H5_HAVE_FSEEK64 to control the definition of HDlseek. It caused errors in AIX where lseek64 is available. Replaced it with H5_HAVE_LSEEK64. Also added the missing HDstrcasecmp macro. Tested: AIX using default and --disable-largefile.
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