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* [svn-r10158] Purpose:James Laird2005-03-071-177/+264
| | | | | | | | | | | | | | | | | | | | | | Automake version upgrade Description: Upgraded automake version from 1.6.2 to 1.9.5. Changed bin/reconfigure script to use automake 1.9.5. Changed configure.in and Makefiles to use new FCFLAGS and FC variables instead of FFLAGS and F9X. Automake and configure should now do the lion's share of the work supporting Fortran 9X; macros in acsite.m4 are now mostly unused (will be cleaned later). Altered how configure handles pmake; now root-level Makefile.in is processed by bin/reconfigure to have a .MAKEFLAGS target, since automake no longer allows us to define unused variables. Configure now always checks for C++ compiler even if it is not used, since automake thinks this is the Right Thing To Do and will break otherwise. Platforms tested: Sol, copper, heping, mir, sleipnir, eirene, pommier, kelgia, modi4.
* [svn-r10123] Purpose:Albert Cheng2005-03-021-3/+0
| | | | | | | | | | | | | | | | | | | | | | | Removed GASS configuration and software packages associated with it. The following software are no longer configurable. checking for main in -lcrypto... yes checking for SSL_get_version in -lssl... yes checking globus_common.h usability... yes checking globus_common.h presence... yes checking for globus_common.h... yes checking for globus_module_activate in -lglobus_common... yes checking for main in -lglobus_gass_cache... yes checking for main in -lglobus_gaa... yes checking for main in -lglobus_gss... yes checking for main in -lglobus_gss_assist... yes checking for main in -lglobus_io... yes checking for main in -lglobus_gass_transfer_assist... yes checking for main in -lglobus_gass_transfer... yes checking for globus_gass_open in -lglobus_gass_file... yes Platforms tested: h5committested (but copper was down.) tested in modi4 too.
* [svn-r10066] Purpose:James Laird2005-02-231-0/+4
| | | | | | | | | | Libtool upgrade Description: HDF5 was using libtool 1.4.2. Upgraded to libtool 1.5.14. Platforms tested: verbena, heping, pommier, copper, modi4, arabica
* [svn-r10023] Purpose:Xiaowen Wu2005-02-171-0/+1
| | | | | | | | | | | | | | New feature. Description: Add the scaleoffset internal library filter. Solution: Platforms tested: heping, copper, arabica Misc. update:
* [svn-r10016] James Laird2005-02-161-1/+0
| | | | | | | | | | | | | | | | | | | Purpose: Bug fix Description: modi4 dies during build with strange errors. The root cause of these is a two-year-old hack in HDF5's libtool script that only takes effect on IRIX. Solution: Edited the libtool hack (by editing ltmain.sh) to correct a bug in the hack. Also made sure that compiler-specific DEFAULT_LIBS are used when linking. Platforms tested: sleipnir, copper, modi4, sol
* [svn-r9993] Purpose:James Laird2005-02-112-2/+2
| | | | | | | | | | | | | | | | | | | | Bug fix Description: Arabica exhibited strange errors when linker found wrong versions of header files. This happened because include directories were given to linker in the wrong order. Solution: Move include directories from AM_CFLAGS variable to INCLUDES variable to put them before CPPFLAGS variable. Trust me, it works. This bug may also have contributed to strange errors on other platforms (kelgia?). Platforms tested: copper, sleipnir, arabica. (h5dump broke while building on arabica, but this happened in a clean checkout, too).
* [svn-r9988] Purpose:James Laird2005-02-111-15/+4
| | | | | | | | | | | | | | | | | | | | Bug fix Description: pmake (on modi4, for instance) complains about undefined variables if it is run without the -V flag, which turns those errors to warnings. Solution: Added test to configure.in to see if $MAKE will allow Makefiles with undefined variables. If not, sets -V flag in AM_MAKEFLAGS. Ensured that all custom make targets use AM_MAKEFLAGS. Also defined all variables that caused errors in top-level Makefile.am. This means that pmake can be used to build hdf5 *from the top level only*. To run make from a subdirectory, still need to use -V flag (or use make or gmake). Platforms tested: modi4, heping, copper, sleipnir
* [svn-r9930] James Laird2005-02-031-1/+1
| | | | | | | | | | | | | | | | | | Purpose: Bug fix Description: Parallel builds were breaking in tools/lib Solution: talign didn't realize it depended on libh5tools.la because its dependencies listed the full path (../../tools/lib/libh5tools.la). Changed this, and made similar changes in a couple of other directories. This checkin should also add the --foreign flag to every Makefile.in Platforms tested: sleipnir (minor change)
* [svn-r9928] Purpose:Quincey Koziol2005-02-031-1/+1
| | | | | | | | | | | | | New feature Description: Add basic code for new B-tree implementation. They don't do much yet, aren't hooked up to anything yet and the format may change, but I'd like to start getting them into the daily tests. Platforms tested: FreeBSD 4.11 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r9920] Purpose:James Laird2005-02-021-2/+3
| | | | | | | | | | | | | | | | | | | Bug fix Description: Found the permanant fix to automake/CVS dependency problem Solution: Added AM_MAINTAINER_MODE macro to configure.in. Now automake will never try to regenerate Makefiles, Makefiles.in, configure, H5config.h, etc. when they are out of date, nor will it print any warnings. Developers should be very very careful to use reconfigure script, and can add --enable-maintainer-mode flag to configure on heping to regenerate these files correctly. Platforms tested: heping sleipnir copper
* [svn-r9915] Purpose:James Laird2005-02-021-6/+6
| | | | | | | | | | | | | | | Bug fix Description: Configuration files' timestamps were incorrect. Solution: Update Makefiles.in. Also added correct paths to autotools on heping, so heping build should be able to re-generate configuration files even if they are still broken. Platforms tested: sleipnir
* [svn-r9912] Purpose:James Laird2005-02-011-87/+8
| | | | | | | | | | | | | | | | | Bug fix Description: Dependencies between configure files (aclocal, configure.in, configure, Makefiles.am and .in) are still causing Makefiles to try to run autotools during build. Solution: Committed all Makefiles.in to update their timestamps. As a temporary measure, forcibly prevented automake from running autotools during build by redefining the variables it uses. Platforms tested: sleipnir (No changes to Makefile content)
* [svn-r9907] Purpose:James Laird2005-02-011-0/+1
| | | | | | | | | | | | | Bug fix Description: Different compilers use different flags to include Fortran module files Solution: Changed boilerplate to use configure variable rather than hardcoded -M flag. Platforms tested: sleipnir, sol, copper
* [svn-r9902] Purpose:James Laird2005-02-013-428/+792
| | | | | | | | | | | | | | | Configuration feature Description: HDF5 now uses automake to generate Makefiles Solution: Makefile.in files are now generated from Makefile.am files. To reconfigure (after chaning a Makefile.am or configure.in): /bin/sh bin/reconfigure.sh Platforms tested: Many
* [svn-r9876] Purpose:Leon Arber2005-01-271-31/+98
| | | | | | | | | | | | Added ability to select which io performance types to graph Description: Originally, POSIX, MPIO, and PHDF5 were all graphed. Now, any subset of these can be graphed individually via the io_type command-line param. Platforms tested: heping Misc. update:
* [svn-r9871] Purpose:Leon Arber2005-01-261-8/+173
| | | | | | | | | | | | | | | Feature additions: script has support for all sorts of interesting plots. fix axis scaling Description: Added support for 2-d and 3-d plots of the data. Command-line options are also added to customize these plots. Axis tick labels are now much improved and match the data and are logically spaced. Platforms tested: heping (gnuplot must be installed to do the plots) Misc. update:
* [svn-r9867] Purpose:Albert Cheng2005-01-241-2/+2
| | | | | | | | | | | | | | | Bug fixes (provided by Leon Arber). Description: gen_report spewed many messages and could not report speeds that are less than 100MB/s. Solution: Removed -w which prints warning messages. Fixed code to recognize speeds under 100MB/s. Platforms tested: Eirene.
* [svn-r9844] Purpose:Xuan Bai2005-01-201-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug fix. Description: Function _flushall() is not available on Cygwin. So a Cgywin macro is added so the compiler will not call this function when building HDF5 on Cygwin. Solution: Change the following codes: #ifdef H5_HAVE_SYSTEM #ifdefined WIN32 _flushall(); #else HDsystem ("sync"); HDsystem ("df >/dev/null"); #endif to: #ifdef H5_HAVE_SYSTEM #if defined(WIN32) && ! defined(__CYGWIN__) _flushall(); #else HDsystem ("sync"); HDsystem ("df >/dev/null"); #endif Platforms tested: Cygwin 1.5.11, VC 6.0 on XP. Linux 2.4 (heping) Solaris 2.7 (arabica) Misc. update:
* [svn-r9805] Purpose:Quincey Koziol2005-01-111-6/+2
| | | | | | | | | | Code cleanup Description: Remove obsolete support for Watcom C compiler. Platforms tested: None - too minor to require any.
* [svn-r9727] Purpose:Quincey Koziol2004-12-296-11/+8
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-) Description: Generally speaking, this is the "signed->unsigned" change to selections. However, in the process of merging code back, things got stickier and stickier until I ended up doing a big "sync the two branches up" operation. So... I brought back all the "infrastructure" fixes from the development branch to the release branch (which I think were actually making some improvement in performance) as well as fixed several bugs which had been fixed in one branch, but not the other. I've also tagged the repository before making this checkin with the label "before_signed_unsigned_changes". Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel & fphdf5 FreeBSD 4.10 (sleipnir) w/threadsafe FreeBSD 4.10 (sleipnir) w/backward compatibility Solaris 2.7 (arabica) w/"purify options" Solaris 2.8 (sol) w/FORTRAN & C++ AIX 5.x (copper) w/parallel & FORTRAN IRIX64 6.5 (modi4) w/FORTRAN Linux 2.4 (heping) w/FORTRAN & C++ Misc. update:
* [svn-r9183] Purpose: New featureRaymond Lu2004-09-011-10/+3
| | | | | | | | | | | | Description: Restore 6 old error API functions back to the library to be backward compatible with v1.6. They are H5Epush, H5Eprint, H5Ewalk, H5Eclear, H5Eset_auto, H5Eget_auto. These functions do not have error stack as parameter. Solution: Internally, these functions use default error stack. Platforms tested: h5committest and fuss. Misc. update: RELEASE.txt
* [svn-r8983] Purpose:Quincey Koziol2004-08-021-342/+342
| | | | | | | | | | | | Update dependencies Description: Update dependencies after config/depend1.in bugfix Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel IRIX64 6.5 (modi4) h5committested
* [svn-r8781] James Laird2004-07-011-0/+2
| | | | | | | | | | | | | | | | Purpose: HDF5 now supports SZIP with no encoder. Description: SZIP can be configured to have both encoder and decoder or just to have the decoder. HDF5 can now query the configuration of any filter, and will throw errors if users try to write using a filter with encoding disabled. Solution: Added H5Zget_filter_info function, changed API for H5Pget_filter and H5P_get_filter_by_id. See SZIP RFC. Platforms tested: Copper (fortran, C++, parallel), Sleipnir (C++), Arabica (fortran, C++), Verbena (fortran, C++) Misc. update:
* [svn-r8732] Purpose:Quincey Koziol2004-06-231-2/+4
| | | | | | | | | | | | Code cleanup Description: Reduce compiler warnings on SGI IRIX Platforms tested: FreeBSD 4.10 (sleipnir) SGI IRIX6 (Cheryl's machine) Too minor to require full h5committest
* [svn-r8618] Purpose:Quincey Koziol2004-06-051-3/+21
| | | | Fix makefiles, dependencies & manifest after source file rename.
* [svn-r8495] Purpose:Quincey Koziol2004-05-081-324/+324
| | | | | | | | | | | | | | Bug fixes Description: Updated dependencies Fixed error with C++ compiler builds of main library Added H5Pset_data_transform to MPE info Platforms tested: FreeBSD 4.9 (sleipnir)
* [svn-r8128] Purpose:Quincey Koziol2004-01-311-33/+33
| | | | Update dependencies after restructuring of MPI stuff
* [svn-r7914] Purpose:Albert Cheng2003-12-051-0/+50
| | | | | | | | | | | | Regenerate the Dependencies files if needed. Description: Solution: Platforms tested: Misc. update:
* [svn-r7884] Purpose:Quincey Koziol2003-11-251-3/+3
| | | | | | | | | | | Small bug fix Description: MPI_DOUBLE_PRECISION -> MPI_DOUBLE in C code. Platforms tested: Cray T3E (hubble) Too minor to require h5committest
* [svn-r7644] Purpose: Modify a performance test.Raymond Lu2003-10-151-127/+102
| | | | | | | Description: changed some features Platforms tested: RH 8 and modi4. Some simple feature changes.
* [svn-r7629] Purpose: add a new performance programRaymond Lu2003-10-142-2/+883
| | | | | | | | | | Description: This program test performance of create or open datasets and create attributes for datasets. Platforms tested: h5committest Misc. update: MANIFEST
* [svn-r7626] Purpose:Quincey Koziol2003-10-141-7/+14
| | | | | | | | Update dependencies and tracing information Platforms tested: Linux 2.4 (verbena) w/FORTRAN too minor for h5committest
* [svn-r7527] Purpose:Quincey Koziol2003-09-301-1/+1
| | | | | | | | | | | | Code cleanup Description: Clean up a few loose ends and warnings for the 1.6 compatibility changes to the error API. Platforms tested: FreeBSD 4.9 (sleipnir) too minor to require h5committest
* [svn-r7507] *** empty log message ***Raymond Lu2003-09-241-1/+10
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* [svn-r7439] Purpose:Quincey Koziol2003-09-031-2/+2
| | | | | | | | | | | | Code cleanup Description: Clear up a couple of minor issues with compiling the library with a C++ compiler. Platforms tested: FreeBSD 4.9 (sleipnir) Too minor to require h5committest
* [svn-r7361] Description:Albert Cheng2003-08-141-1/+2
| | | | | | | | | | | | Updated the copyright notice--mostly by rearranging some text to make them consistent. Solution: Platforms tested: "h5committested"--sol is down, so, no SUn test. Misc. update:
* [svn-r7352] Purpose:Quincey Koziol2003-08-131-0/+7
| | | | | | | Updated dependencies Platforms tested: h5committested
* [svn-r7274] *** empty log message ***Bill Wendling2003-07-291-8/+8
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* [svn-r7265] *** empty log message ***Raymond Lu2003-07-261-2/+2
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* [svn-r7181] Purpose:Quincey Koziol2003-07-072-16/+0
| | | | | | | | | | | Version update Description: Removed 1.4 compatibility code in the library. Platforms tested: FreeBSD 4.8 (sleipnir) h5committest
* [svn-r7128] Purpose:Albert Cheng2003-06-301-1/+4
| | | | | | | | | | | | | | | feature change, new feature. Description: Had the HDF5_PARAPREFIX default set to /tmp. Changed it to null so that data files are created in current directory by default. Also added a code to print data filename used when debug level > 0. Platforms tested: Tested in modi4 parallel. Misc. update:
* [svn-r7091] Purpose:Quincey Koziol2003-06-243-33/+0
| | | | | | | | | | | | | Code cleanup Description: Remove the fill-value option entirely, since the 1.5.x library's default behavior is now the same as the 1.4.x behavior and also there is no corresponding code for implementing fill-values with the POSIX or MPI-I/O tests. Platforms tested: FreeBSD 4.8 (sleipnir) w/parallel too small to need h5committest
* [svn-r7060] Purpose:Quincey Koziol2003-06-181-3/+3
| | | | | | | | | | | Code cleanup Description: Change some variables that are keywords in C++ to non-keywords. Platforms tested: FreeBSD 4.8 (sleipnir) too minor to require full h5committest
* [svn-r7033] Purpose:Albert Cheng2003-06-131-1/+9
| | | | | | | | | | | | | | | minor improvment Description: corrected an omission in the usage help output. Added more parameters checks. Solution: Platforms tested: Only in modi4. Misc. update:
* [svn-r7026] Purpose:Bill Wendling2003-06-111-1/+1
| | | | | | | | | | | | | | | | | | | | | Bug Fix Description: On HP-UX platforms, the "open()" function needs to specify that the file being created has permissions S_IRWXU, which means that it gives read/write/execute permissions to the user who created the file (how nice of it!). Solution: Added the S_IRWXU flag to the open() function call. Platforms tested: HP-UX 11 Arabica, Modi4, Verbena Misc. update:
* [svn-r7019] Purpose:Quincey Koziol2003-06-101-0/+4
| | | | | | | | | | | | | | Compatibility fix Description: The H5P[set|get]_fapl_mpiposix calls changed between v1.4.x and v1.5.x. Solution: Wrap them in the v1.4 backward compatibility #ifdefs and update tests, etc. Platforms tested: FreeBSD 4.8 (sleipnir) w/paralle & v1.4 compatibility h5committest pointless
* [svn-r6998] Purpose:Albert Cheng2003-06-091-1/+1
| | | | | | | | | | | | | | | | | | "Bug fix" Description: This version is showing very slow HDF5 I/O write speeds (about 40% of MPIO). It was because the library is writing fill values by default. There is a no-fill option which set to FALSE. Changed it to TRUE since MPIO and POSIX are not doing fill values. This is just a stop gap fix since the better fix would be to change the library to not write fill-values in this case. Platforms tested: modi4 parallel and LANL Q paralllel. No h5committest test because it is very trivia. Misc. update:
* [svn-r6989] Albert Cheng2003-06-061-0/+2
| | | | | | | | | | | Purpose: Added sanity check that min number of processes be not greater than max number of processes. Platforms tested: copper only since this is a very simple change. Misc. update:
* [svn-r6978] Purpose:Albert Cheng2003-06-051-0/+9
| | | | | | | | | | | | | | | | | | Bug fix. Description: The default setting of max transfer size is larger than the default setting of number of bytes per process, result in complaints that Transfer size is too big. Solution: Cap the min and max transfer size with number of bytes per process. Always cap min transfer size with the max xfer size. Platforms tested: Copper. Misc. update:
* [svn-r6822] Purpose:Bill Wendling2003-05-072-5/+6
| | | | | | | | | | | | | | | | | | | Code Improvements/Bug Fixes Description: Comparison of equality of a double/float variable to 0.0 is not guaranteed to work and is bad practice. Solution: Test that the absolute value of the variable is < a very small positive number. Platforms tested: Modi4 (Parallel & Fortran) Verbena (C++ & Fortran) Arabica (Fortran) Misc. update:
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