| Commit message (Collapse) | Author | Age | Files | Lines |
|
|
|
|
|
|
|
|
|
|
| |
Added Fortran H5E APIs:
h5eregister_class_f, h5eunregister_class_f, h5ecreate_msg_f, h5eclose_msg_f
h5eget_msg_f, h5epush_f, h5eget_num_f, h5ewalk_f, h5eget_class_name_f,
h5eappend_stack_f, h5eget_current_stack_f, h5eset_current_stack_f, h5ecreate_stack_f,
h5eclose_stack_f, h5epop_f, h5eprint_f (C h5eprint v2 signature)
Addresses Issue #3987
|
|
|
|
|
|
|
| |
* Rename incorrectly named option
* Restore the correct uses of USING_MEMCHECKER
* Update release note
|
|
|
|
|
| |
H5Tset_fields did not account for any offset in a floating-point datatype,
causing it to fail when a datatype's precision is correctly set such that
it doesn't include the offset bits.
|
| |
|
|
|
|
|
|
|
|
|
| |
is used (#4021)
When the H5LT_FILE_IMAGE_DONT_COPY flag is passed to H5LTopen_file_image, the internally-allocated
udata structure gets leaked as the core file driver doesn't have a way to determine when or if it
needs to call the 'udata_free' callback. This has been fixed by freeing the udata structure when
the 'image_free' callback gets made during file close, where the file is holding the last reference
to the udata structure.
|
|
|
|
|
|
| |
H5F_get_access_plist previously did not copy over the file locking settings
from a file into the new File Access Property List that it creates. This would
make it difficult to match the file locking settings between an external file
and its parent file.
|
| |
|
| |
|
|
|
|
|
| |
* revert to using c-stub for _F08 MPI APIs
* use mpi compiler wrappers for cmake and nvhpc
|
|
|
|
|
|
|
|
|
|
|
| |
* Switch warnings as errors to default OFF
* Enable mac docs
* Add doxygen action uses step
* Use html div around snippet
* Allow preset name to be an argument to cmake-ctest.yml
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
| |
* - Added Fortran APIs:
H5FGET_INTENT_F, H5SSELECT_ITER_CREATE_F, H5SSEL_ITER_GET_SEQ_LIST_F,
H5SSELECT_ITER_CLOSE_F, H5S_mp_H5SSELECT_ITER_RESET_F
- Added Fortran Parameters:
H5S_SEL_ITER_GET_SEQ_LIST_SORTED_F, H5S_SEL_ITER_SHARE_WITH_DATASPACE_F
- Added tests for new APIs
- Removed H5F C wrapper stubs
- Documentation misc. cleanup.
|
|
|
|
|
| |
* added subfiling example
* Added filtered writes with no selection example
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
| |
Vector I/O requests are now processed within a single
set of I/O call batches, rather than each I/O vector
entry (tuple constructed from the types, addrs, sizes
and bufs arrays) being processed individually. This allows I/O to be
more efficiently parallelized among the I/O concentrator processes
during large I/O requests.
* Fixed some calculations and add test cases for issues spotted from review
* Removed a variable that was compensating for previous miscalculations
|
| |
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
HDF5 performs a couple of checks at build time to see if long double
values can be converted correctly (IBM's Power architecture uses a
special format for long doubles). These checks were performed using
TRY_RUN, which is a problem when cross-compiling.
These checks now use default values appropriate for most non-Power
systems when cross-compiling. The cache values can be pre-set if
necessary, which will preempt both the TRY_RUN and the default.
Affected values:
H5_LDOUBLE_TO_LONG_SPECIAL (default no)
H5_LONG_TO_LDOUBLE_SPECIAL (default no)
H5_LDOUBLE_TO_LLONG_ACCURATE (default yes)
H5_LLONG_TO_LDOUBLE_CORRECT (default yes)
H5_DISABLE_SOME_LDOUBLE_CONV (default no)
Fixes GitHub #3585
|
|
|
|
|
|
|
|
|
|
| |
configure.ac contains a sed line that cleans up incorrect library
flags which was added to paper over some bugs in earlier versions
of the Autotools. These issues are not a problem with the current
versions of the Autootols.
The sed line causes problems on MacOS, so it has been removed.
Fixes #3843
|
|
|
|
|
|
|
| |
The H5T floating-point datatype initialization code can raise exceptions when handling signaling NaNs. This change disables FE_INVALID exceptions during initialization.
Also removes the -ieee=full change for NAG Fortran as that shouldn't be necessary anymore.
Fixes #3831
|
|
|
| |
* provide an alternative to mapfile for older bash
|
|
|
|
|
|
|
|
|
| |
H5VLnative_token_to_address_f (#3801)
* Added H5VLnative_addr_to_token_f and H5VLnative_token_to_address_f
* Added H5VLnative_addr_to_token_f and H5VLnative_token_to_address_f tests
* Added H5VLnative_addr_to_token_f and H5VLnative_token_to_address_f tests
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
* Set NVHPC maximum optimization level to -O1 for now
Compiling HDF5 with NVHPC 23.5 - 23.9 results in test failures in
4 different test files that need to be resolved. Since those tests
pass with an optimization level of -O1 (and -O0) and it is currently
unclear whether the test failures are due to issues in HDF5 or issues
in the 'nvc' compiler, set the maximum optimization level for NVHPC
to -O1 until the test failures are resolved.
* Disable nvhpc Java testing in CMake and amend known issues
* Re-enable testing of Autotools nvhpc
|
| |
|
|
|
|
|
|
| |
When opening a file with the core VFD and a file image, if the file
already exists, the file check would leak the POSIX file handle.
Fixes GitHub issue #635
|
| |
|
|
|
|
|
|
|
|
|
|
| |
Add functions/callbacks for explicit control over chunk index open/close
Add functions/callbacks to check if chunk index is open or not so
that it can be opened if necessary before temporarily disabling
collective metadata reads in the library
Add functions/callbacks for requesting loading of additional chunk
index metadata beyond the chunk index itself
|
| |
|
| |
|
|
|
|
|
|
|
| |
* added h5pget_actual_selection_io_mode_f test
* added tests for h5pget_actual_selection_io_mode_f
* fixed int_f type conversion
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
* Update Autotools to correctly configure oneAPI
Splits the Intel config files under the Autotools into 'classic'
Intel and oneAPI versions, fixing 'unsupported option' messages.
Also turns off `-check uninit` (new in 2023) in Fortran, which kills
the H5_buildiface program due to false positives.
* Enable Fortran in oneAPI CI workflow
* Turn on Fortran in CMake, update LD_LIBRARY_PATH
* Go back to disabling Fortran w/ Intel
For some reason there's a linking problem w/ Fortran
error while loading shared libraries: libifport.so.5: cannot open shared object file: No such file or directory
|
|
|
|
|
|
|
|
|
| |
Adds a small cache of the first N bytes of a file opened with the
read-only S3 (ros3) VFD, where N is 4kiB or the size of the file,
whichever is smaller. This avoids a lot of small I/O operations
on file open.
Addresses GitHub issue #3381
|
|
|
| |
This function allows the user to determine if the library performed selection I/O, vector I/O, or scalar (legacy) I/O during the last HDF5 operation performed with the provided DXPL. Expanded existing tests to check this functionality.
|
|
|
|
|
|
|
|
|
|
|
|
| |
Add for both CMake and the Autotools
* HDF5_ENABLE_DOXY_WARNINGS: ON/OFF (Default: ON)
* --enable-doxygen-errors: enable/disable (Default: enable)
The default will fail compile if the doxygen parsing generates warnings.
The option can be disabled if certain versions of doxygen have parsing
issues. i.e. 1.9.5, 1.9.8.
Fixes #3398
|
| |
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
* Adds a config/clang-fflags options file to support Flang
* Corrects missing "-Wl," from linker options in the libtool wrappers
when using Flang, the MPI Fortran compiler wrappers, and building
the shared library. This would often result in unrecognized options
like -soname.
* Enable -nomp w/ Flang to avoid linking to the OpenMPI library.
CMake can build the parallel, shared library w/ Fortran using AOCC
and Flang, so no changes were needed for that build system.
Fixes GitHub issues #3439, #1588, #366, #280
|
|
|
|
|
|
|
|
|
| |
* added cmake ieee flag for nagfor
* fixes gfortran -O2 and -O3, -fdefault-real-16
* fixed sync
* updated release notes
|
|
|
|
|
|
|
| |
* added cmake ieee flag for nagfor
* generalized determining the nag compiler
* fixing some misc. NAG warnings
|
| |
|
| |
|
| |
|
| |
|
| |
|
|
|
|
|
|
|
|
|
| |
The thread-safety feature on Windows requires a hook in DllMain() and
thus is only available when HDF5 is built as a shared library.
This was previously a warning, but has now been elevated to a fatal
error that cannot be overridden with ALLOW_UNSUPPORTED.
Fixes GitHub #3613
|
|
|
|
| |
Removed the use of -commons linking option on Darwin as COMMON and EQUIVALENCE is no long used
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
* Added new wrappers for
h5get_free_list_sizes_f
H5Sselect_intersect_block_f
H5Sselect_shape_same_f
h5pget_no_selection_io_cause_f
h5pget_mpio_no_collective_cause_f
H5Lvisit_by_name_f
H5Lvisit_f
H5Fget_info_f
h5dwrite_chunk_f
h5dread_chunk_f
* added h5pget_file_space_page_size_f, h5pset_file_space_page_size_f, h5pget_file_space_strategy_f, h5pset_file_space_strategy_f, h5info tests
* added fortran tests
* Update tH5F.F90
|
| |
|
| |
|