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* [svn-r21553] Maintenance: Added an entry for the Fortran DS wrappers.Elena Pourmal2011-10-131-1/+11
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* [svn-r21552] Maintenance: Addressed HDFFV-915 - investigate if H5open and ↵Elena Pourmal2011-10-131-1/+6
| | | | | | | | | | | | | H5close are needed in the corresponding Fortran wrappers. Solutions: The calls were not needed and were removed from the C stubs h5open_c and h5close_c for the correspnding Fortran subroutines h5open_f and h5close_f. Platforms tested: jam with gcc and gfortran, PGI and Intel koala with PGI and Intel linew with the standard Sun compilers
* [svn-r21508] Revoked svn check-ins 20913 and 20921 (fix for HDFFV-7579) ↵Dana Robinson2011-10-101-4/+0
| | | | pending a careful evaluation of enum conversion behavior.
* [svn-r21499] Snapshot version 1.9 release 94HDF Tester2011-10-091-1/+1
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* [svn-r21477] Removed the known problem of insufficient memory error in AIX. ↵Albert Cheng2011-10-051-7/+0
| | | | | | It was patched in the config/ibm-aix file.
* [svn-r21469] updated with the change of Windows platform switched back to ↵Albert Cheng2011-10-041-0/+4
| | | | | | use SEC2 as the default VFD.
* [svn-r21443] Snapshot version 1.9 release 93HDF Tester2011-10-021-1/+1
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* [svn-r21415] Snapshot version 1.9 release 92HDF Tester2011-09-251-1/+1
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* [svn-r21396] Purpose:Jonathan Kim2011-09-161-0/+2
| | | | | | | | | | | | | | | | | | | | HDFFV-7693 - h5diff produces different behavior between versions: 1.8.3 and 1.8.6 Description: There were two issues on this. One was not displaying all the comparable objects if non-comparable object/attribute exist and compared before comparables ones. This issue occurred after 1.8.4 release. This is the issue from user. The other issue was not displaying all the comparable attributes, if non-comparable object/attribute exist and compared ahead. This issue were exist even before 1.8.4 release. So it's possible some attribute comparison may have not displayed correctly in the past, if non-comparable data were exist in common object. Fixed h5diff to display all the comparable object and attribute regardless of non-comparables. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Cmake (jam, Windows)
* [svn-r21393] Just moved comment to the top of the Tools' list as the new ↵Jonathan Kim2011-09-141-4/+5
| | | | | | entry is suppose to add to the top not the bottom. Relate to fix for HDFFV-5932 - h5repack.
* [svn-r21381] Peter Cao2011-09-141-1/+5
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* [svn-r21374] Snapshot version 1.9 release 91HDF Tester2011-09-111-1/+1
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* [svn-r21366] JIRA HDFFV-2748 replace use of _WIN32 in source. Created new ↵Allen Byrne2011-09-061-1/+3
| | | | | | defines H5_HAVE_WIN32_API and H5_HAVE_VISUAL_STUDIO defines to use. These can be properly set during configurration. Tested: windows and local linux - reviewed internally
* [svn-r21360] Snapshot version 1.9 release 90HDF Tester2011-09-041-1/+1
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* [svn-r21358] Purpose:Jonathan Kim2011-09-021-0/+4
| | | | | | | | | | | HDFFV-7712 - h5diff: segfault over combinations of complex container types (compound, array, vlen) Description: - Fixed segfault over dataset with container types (array,lven) with multiple nested compound types. (ex: compound->array->compound, compound->vlen->compound) Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Cmake (jam)
* [svn-r21357] I updated the information about the fixes for Issue 7674 - ↵Raymond Lu2011-09-021-0/+9
| | | | CLANG compiler's complaints.
* [svn-r21329] Snapshot version 1.9 release 89HDF Tester2011-08-281-1/+1
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* [svn-r21292] Moved Tools recent fixes (HDFFV-7649 and HDFFV-7659) ↵Jonathan Kim2011-08-221-7/+9
| | | | descriptions to correct section.
* [svn-r21265] h5repack: added macro to handle failure in H5Dread/write when ↵Peter Cao2011-08-191-0/+2
| | | | memory allocation failed inside the library
* [svn-r21236] Purpose:Jonathan Kim2011-08-161-0/+6
| | | | | | | | | | | | | | | | | | | | Work for: HDFFV-7515 - GMQS: h5unjam - incorrect help page and should display when no file is given. and HDFFV-5941 - h5jam: specifying a user block file with a proper HDF5 magic number will result in a corrupted HDF5 file. Description: - Revised command help pages of h5jam and h5unjam. The descriptions were not up to date and some were missing. (HDFFV-7515) - Fixed h5jam not to allow specifying an HDF5 formatted file as input file for -u (user block file) option, because the original HDF5 file will not be accessible if allows. (HDFFV-5941) Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Cmake (jam, Wondows)
* [svn-r21228] Added #ifdefs around #include unistd.h and created windows ↵Allen Byrne2011-08-151-0/+3
| | | | | | getlogin() function for building HDF5 parallel on windows. Reviewed and tested locally and tested by user.
* [svn-r21227] Correct location of xml schema files. JIRA HDFFV-7688Allen Byrne2011-08-151-22/+29
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* [svn-r21225] Snapshot version 1.9 release 88HDF Tester2011-08-141-1/+1
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* [svn-r21185] Snapshot version 1.9 release 87HDF Tester2011-08-071-1/+1
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* [svn-r21158] Snapshot version 1.9 release 86HDF Tester2011-07-311-1/+1
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* [svn-r21149] Snapshot version 1.9 release 85HDF Tester2011-07-241-1/+1
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* [svn-r21146] Updated RELEASE.txtLarry Knox2011-07-231-26/+42
| | | | | | | Replaced several old Linux platforms no longer in use with the current Linux test machine information. No test - doc file only. M release_docs/RELEASE.txt
* [svn-r21143] No access to any AIX system any more.Albert Cheng2011-07-231-8/+0
| | | | Removed entries of AIX as tested platform.
* [svn-r21117] Issue 2763 - I added a new parameter of object access property ↵Raymond Lu2011-07-181-0/+4
| | | | | | list to the function H5Rdereference. It's called H5Rdereference2 now. H5Rdereference function has been deprecated to H5Rdereference1. I also added some test cases in trefer.c. Tested on jam, heiwa, and koala.
* [svn-r21105] Fixed two bugs:Peter Cao2011-07-151-0/+4
| | | | | | | - h5repack: h5repack failed to copy dataset if the layout is changed from chunked with unlimited dims to contiguous. (PC -- 2011/07/15) - h5diff: "--delta" option considers two NaN of the same type are different, which is wrong based on http://www.hdfgroup.org/HDF5/doc/RM/Tools.html#Tools-Diff. (PC -- 2011/07/15)
* [svn-r21101] HDFFV-7639Mike McGreevy2011-07-141-0/+6
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Purpose: Remove H5_MPI_SPECIAL_COLLECTIVE_IO_WORKS and H5_MPI_COMPLEX_DERIVED_DATATYPE_WORKS #defines from source. Description: Two advanced parallel functionalities, special collective IO and complex derived datatypes, are not supported by older implementations of mpi, and thus our code limits the use of these features with #ifdefs and has checks in configure to set them (or not). Unfortunately, configure can't actually run a parallel check to see if these features are working (nor not) so it resorts to looking in the config files where they are explicity enabled or disabled based on versions of mpi, sytems being built on, or for no documented reason at all (i.e. just set to on or off as some 'default'). Overriding these settings is easy if need be, provided it is known that it needs to be done to get improved performance, and oftentimes it is not. Most new MPI implementations successfully handle the functionality requested when these #defines are set, and many of the "turn these features off" cases in the config files are for old (> 5 years) versions of MPI and retired systems (such as NCSA's tungsten). Therefore, the decision has been made to remove the support for these old versions of MPI and systems that cannot handle these behaviors. The #ifdefs and supporting setup in the config/ files and configure script has been removed, and the code executed when these options were not set removed from the source. In passing, this commit also cleans up some whitespace issues in both t_mpi.c and H5Dmpio.c. Furthermore, in t_mpi.c, the special collective IO test was not getting regularly run due to it being written to work only with four processes (we regularly test with six, previously with three), and thus it failed when actually run due to an out of bounds data buffer assignment. It has been modified to run at any number of processes greater than four, and the memory problem has been fixed so the test passes. Tested: jam, h5committest, ember
* [svn-r21072] Purpose:Jonathan Kim2011-07-071-0/+3
| | | | | | | | | | | | Work for HDFFV-7600 - GMQS: h5diff - argument options -d, -p and --use-system-epsilon should be mutually exclusive. Description: Fixed h5diff to display instructive error message and exit with 1 when mutually exclusive options (-d, -p and --use-system-epsilon) are used together. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Cmake (jam)
* [svn-r21033] Snapshot version 1.9 release 84HDF Tester2011-06-261-1/+1
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* [svn-r21015] Bug fix for Issue 2598 - In v1.6 library, there was EOA for the ↵Raymond Lu2011-06-221-1/+9
| | | | | | | | | | | | | whole MULTI file saved in the super block. We took it out in v1.8 library because it's meaningless for the MULTI file. v1.8 library saves the EOA for the metadata file, instead. But this caused some backward compatibility problem. v1.8 library couldn't open the file created with v1.6 library. I fixed the problem by checking the EOA value to detect the file created with v1.6 library. Tested on jam, koala, and heiwa.
* [svn-r21014] Purpose:Jonathan Kim2011-06-211-0/+6
| | | | | | | | | | | | | | HDFFV-5878 - GMQS: h5dump - incorrect output format for array type with multiple elements in an index Description: Fixed h5dump to display the first line of each element into correct position for multiple dimention array type. Before this fix, the first line of each element in array were displayed after the last line of previous element without moving to the next line (+indentation) Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE)
* [svn-r21000] Snapshot version 1.9 release 83HDF Tester2011-06-191-1/+1
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* [svn-r20929] Issue 4278 - When reading data fails, the error message should ↵Raymond Lu2011-06-031-0/+3
| | | | | | say which filter isn't registered. The fix is simple. Most of the effort is on the test. The file with filter enabled is created in gen_filter.c. The verification of the error message is in test_error.c. The output is compared against the standard output. Tested on jam, koala, and heiwa.
* [svn-r20922] Snapshot version 1.9 release 82HDF Tester2011-05-291-1/+1
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* [svn-r20913] Issue 7579 - The overflowing ENUM values are inconsistent. ↵Raymond Lu2011-05-271-0/+4
| | | | | | | | | | When no conversion is involved in reading or writing the data, overflowing values are retained. When conversion happens, the values become -1. The conversion function puts -1 when overflow happens. I added two new dataset transfer property to control whether to fill 0xff in the destination data or convert to the destination data when overflow happens. The two new functions are H5Pset(get)_enum_conv_overflow. I also added test cases in enum.c and dtypes.c. Tested on jam, koala, and heiwa.
* [svn-r20890] Snapshot version 1.9 release 82HDF Tester2011-05-231-1/+1
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* [svn-r20872] Issue 7564 - Allow H5Tcreat to create string type (fixed-length ↵Raymond Lu2011-05-201-0/+2
| | | | | | and variable-length). I also added a test case in dtypes.c. Tested on jam and linew - relatively simple.
* [svn-r20804] Purpose:Jonathan Kim2011-05-121-0/+3
| | | | | | | | | | | | HDFFV-7594 - GMQS: h5dump shows wrong values for H5T_STD_I8LE dataset on Blue-gene (ppc64 linux BE +@) Description: For the STD_I8 type data, updated to use 'signed char' instead of 'char' as 'char' could be defined as unsigned on a certain system, which cause h5dump to display data values incorrectly. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE)
* [svn-r20767] Purpose:Jonathan Kim2011-05-061-4/+10
| | | | | | | | | | | | HDFFV-5928 - GMQS: h5diff problem and improvement on comparsing the same objects Description: Improved performance by eliminating duplicated action for getting object information in half from the previous fixe when comparing group vs group. This is addition to the previous commit r20676. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), cmake
* [svn-r20689] Changed compiler name from xlf/mpxlf_r to xlf90/mpxlf90_r to avoidAlbert Cheng2011-04-291-2/+2
| | | | | misunderstanding. xlf/mpxlf_r are actually Fortran 77 compilers. HDF5 requires Fortran 90 or higher.
* [svn-r20646] Description:Quincey Koziol2011-04-261-14/+12
| | | | | | | | | | Small improvement to the core VFD's error reporting. Update FreeBSD information Tested on: FreeBSD/32 8.2 (loyalty) (too minor to require h5committest)
* [svn-r20639] Add missing entry for "Bug HDFFV-4358"Jonathan Kim2011-04-261-0/+5
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* [svn-r20520] Removed ibm-aix6.x file which just sourced ibm-aix file. ↵Albert Cheng2011-04-151-0/+2
| | | | | | | | | | Removed code in configure.in that tried to distinguish different versions of AIX. This is no longer needed. Tested: NCSA Blue-print. No h5committest since this affected AIX system only.
* [svn-r20502] Purpose:Mike McGreevy2011-04-141-0/+6
| | | | | | | | | | | | | | | | | | | | | | | | Add "silent make" mode configure option. Description: Automake 1.11 has a new option available that allows for a silent make mode. This functionality needs to be explicitly enabled in configure.in via the use of the automake macro AM_SILENT_RULES, which is what this commit is adding. This introduces a new configure option: --{en|dis}able-silent-rules This option is on by default, and simplies compile and link line outputs when building the library. Disabling this option will print full "verbose" output (i.e., full compile and linking lines for each target). Tested: This was tested on jam & h5committested
* [svn-r20491] Rename H5Frelease_file_cache to H5Fclear_elink_file_cache.Neil Fortner2011-04-131-1/+1
| | | | Tested: Fedora (too minor for full committest)
* [svn-r20488] Purpose:Jonathan Kim2011-04-121-0/+2
| | | | | | | | | | | Fix HDFFV-4342 : GMQS: h5dump test fails when source directory is read-only Description: Updated h5dump test case script to prevent entire test failure upon source code directory is read-only. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE)
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