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* Removes lock/unlock callbacks from ros3 and hdfs VFDs (#258)Dana Robinson2021-01-141-14/+0
| | | | | | | | | | | | | | | | * Removes no-op callback stubs from read-only VFDs Also changes VFD registration to allow read-only VFDs with no write callback to be registered. * Adds a RELEASE.txt note for HDFFV-11205 For the read-only VFD registration change * Revert "Removes no-op callback stubs from read-only VFDs" This reverts commit a7a95497305d64d2de783fdb0e3186a532446a4a. * Removes lock callbacks from ros3 and hdfs VFDs
* Reclassify CMake messages - HDFFV-11144 (#253)Allen Byrne2021-01-131-1/+13
| | | | | | | | | | | | | * OESS-98 convert plugin option to FetchContent, add tests * Fixes for pkcfg files because of plugin option * OESS-98 fix tools test for plugins * Keep doxygen comments under 100 chars long - format hint * Whitespace * HDFFV-11144 - Reclassify CMake messages
* Allow read-only VFD registration (#257)Dana Robinson2021-01-131-0/+14
| | | | | | | | | | * Removes no-op callback stubs from read-only VFDs Also changes VFD registration to allow read-only VFDs with no write callback to be registered. * Adds a RELEASE.txt note for HDFFV-11205 For the read-only VFD registration change
* Fixes Autotools detection of the st_blocks field in stat (#246)Dana Robinson2021-01-081-1/+10
| | | | | | | | | * Fixes Autotools detection of the st_blocks field in stat The Autotools and CMake will now both correctly determine if the stat struct has the st_blocks field and set H5_HAVE_STAT_ST_BLOCKS appropriately. * Fixes a typo in configure.ac
* Adds h5delete tool (#187)Dana Robinson2020-12-161-0/+14
| | | | | | | | | * Adds h5delete tool * Fixed MANIFEST * Added RELEASE.txt note * Fix typo in RELEASE.txt
* OESS-98 convert plugin option to FetchContent, add tests (#155)Allen Byrne2020-12-161-17/+36
| | | | | | | | | | | * OESS-98 convert plugin option to FetchContent, add tests * Fixes for pkcfg files because of plugin option * Update other test machines * OESS-98 fix tools test for plugins * HDFFV-10865 performance improvement for java array
* Replace H5E_ATOM major error category with H5E_ID (#121)Dana Robinson2020-11-301-0/+20
| | | | | | | | | | * Renames H5I_ATOM to H5I_ID, among other related changes * Java has been updated. * Fortran is failing on my VM, even though I don't touch that. * Adds a RELEASE.txt note for H5E_ATOM to H5E_ID changes * Fixes typos in comments
* FreeBSD autotools changes (#142)Dana Robinson2020-11-301-0/+14
| | | | | | | | | | | | | | | | * Updates to allow autotools builds on recent FreeBSD * Switches the default C compiler to cc from gcc (this may need a version string check if we want to support FreeBSD 9 and earlier. FreeBSD 10 was released in 2014) * Makes the default C++ compiler c++ (no previous setting) * Both of these resolve to Clang on FreeBSD 10+ * Added a note about flang being unsuitable on FreeBSD (the port uses an ancient build of flang that lacks Fortran 2003 support) * Autotools only - CMake appears to use different CPP flags which cause compilation errors * Adds a RELEASE.txt note for new FreeBSD autotools changes
* Minor/solaris gcc fix (#126)Dana Robinson2020-11-251-0/+13
| | | | | | | * Adds gnu99 as the standard when building with gcc on Solaris * Adds a note to RELEASE.txt and improves comments For Solaris + gcc fix (HDFFV-11191)
* Adds a configure/CMake option to control -Werror behavior (#119)Dana Robinson2020-11-251-0/+22
| | | | | * Works in both Autotools and CMake * OFF by default * Reverts "always on" -Werror behavior released in 1.10.7
* Update release text files (#109)Allen Byrne2020-11-237-2448/+7656
| | | | | | | * Update release text files * spelling correction * Update list
* Set doxygen default to normally disabled.Allen Byrne2020-11-092-1/+2
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* Doxygen correct typosAllen Byrne2020-11-041-2/+2
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* Doxygen add new files and update docsAllen Byrne2020-11-032-1/+15
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* CMake: Add an option to opt-out static libgccMichel Zou2020-10-312-0/+8
| | | | | With sjlj exception model, statically link to libgcc/libstdc++ prevents exceptions to be caught from other dynamic libraries.
* CMake: Add an option to opt-out MSVC naming conventionMichel Zou2020-10-302-0/+8
| | | | | We might want to keep the default mingw import name, see: https://github.com/msys2/MINGW-packages/blob/master/mingw-w64-hdf5/hdf5-default-import-suffix.patch
* HDFFV-10868 - add noteAllen Byrne2020-10-281-0/+9
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* Correct SZ options for building pluginsAllen Byrne2020-10-211-5/+5
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* URL and options correctionsAllen Byrne2020-10-191-1/+1
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* Whitespace and url correctionAllen Byrne2020-10-191-1/+1
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* Correct entries related to --enable-build-mode and --enable-profiling inLarry Knox2020-10-031-4/+7
| | | | INSTALL file, and remove obsolete SZIP paragraph from COPYING file.
* More info for building plugins with libraryAllen Byrne2020-09-283-11/+125
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* OESS-98 add release note for optionAllen Byrne2020-09-271-3/+12
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* Merge pull request #2882 in HDFFV/hdf5 from ↵Allen Byrne2020-09-251-0/+10
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~BYRN/hdf5_adb:feature/cmakeV2-clang-format to develop * commit '571a5e9250ca69adb54ef956361a5cf77059f67c': Add h5ls test plugin format target Fix manifest Add code owners file Update actions - split push/pull-request commits Change to executable Change to based on LLVM format Fix comment formatting due to tabs conversion Disable formatting for file File changes to affect formatting CMake and script changes for clang-format
| * CMake and script changes for clang-formatAllen Byrne2020-09-041-0/+10
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* | Add release note for new H5Ssel_iter_reset functionJordan Henderson2020-09-181-0/+10
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* Adds RELEASE.txt note about HDFS VFD stubs being removedDana Robinson2020-08-271-0/+34
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* Merge pull request #2771 in HDFFV/hdf5 from ↵Binh-Minh Ribler2020-08-161-0/+10
|\ | | | | | | | | | | | | | | | | ~BMRIBLER/hdf5_bmr:hdf5_bmr_HDFFV-10933 to develop Fixed HDFFV-10933 * commit '16349c5fddce8a74644e18d01d7ea8186aaaa255': Fixed HDFFV-10933
| * Fixed HDFFV-10933Binh-Minh Ribler2020-08-141-0/+10
| | | | | | | | | | | | | | | | | | | | | | Description: Updated the original fix by Kent Y. in commit 200a77d8c3e51663c375aafffff607ae9b438f4e - used internal functions instead of public API - moved some code into the subroutine for a cleaner look. - added test to dsets.c Platforms tested: Linux/64 (jelly)
* | HDFFV-9984 Add options to merge/prune external links during repackAllen Byrne2020-08-141-0/+11
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* Merge pull request #2753 in HDFFV/hdf5 from ~EPOURMAL/hdf5_ep:develop to developElena Pourmal2020-08-141-2/+6
|\ | | | | | | | | | | | | * commit 'c6248cfb6975a6ecadf0259390247ce05dc13c4b': Addresseda Dana's comments from the pull request. Fixed several typos in the comments found by Larry during the review. The H5DSis_scale function was updated to return "not a dimension scale" (0) instead of failing (-1), when CLASS or DIMENSION_SCALE attributes are not written according to Dimension Scales Specification (HDFFV-10436).
| * The H5DSis_scale function was updated to return "not a dimension scale" (0)Elena2020-08-121-2/+6
| | | | | | | | | | instead of failing (-1), when CLASS or DIMENSION_SCALE attributes are not written according to Dimension Scales Specification (HDFFV-10436).
* | spellingAllen Byrne2020-08-131-1/+1
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* | HDFFV-11127 - force RTLD_LOCAL in dlopenAllen Byrne2020-08-121-3/+12
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* Renames BEST-EFFORT to BEST_EFFORT for file locking env varDana Robinson2020-08-061-3/+3
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* Squash merge of file locking fixesDana Robinson2020-08-031-1/+110
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* Merge pull request #2711 in HDFFV/hdf5 from bmr-HDFFV-11120 to developBinh-Minh Ribler2020-07-291-0/+11
|\ | | | | | | | | | | | | | | Fix HDFFV-11120 and HDFFV-11121 (CVE-2018-13870 and CVE-2018-13869) * commit '707e30c6be1954c0027374124207e46caae68cbc': Fixed typos in error messages. Fix HDFFV-11120 and HDFFV-11121 (CVE-2018-13870 and CVE-2018-13869)
| * Fix HDFFV-11120 and HDFFV-11121 (CVE-2018-13870 and CVE-2018-13869)Binh-Minh Ribler2020-07-221-0/+11
| | | | | | | | | | | | | | | | | | | | | | | | Description: When a buffer overflow occurred because a name length was corrupted and became very large, h5dump produced a segfault on one file and a memcpy parameter overlap on another file. This commit added checks that detect a read pass the end of the buffer to prevent these error conditions. Platforms tested: Linux/64 (jelly) SunOS 5.11 (emu)
* | Merge pull request #2714 in HDFFV/hdf5 from ↵Dana Robinson2020-07-281-0/+15
|\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:h5s_set_extent_none to develop * commit 'e4603ff8a171e82de6373ba6eddcf59d5eeab5aa': Updated the Java tests to deal with H5Sset_extent_none changes Fixed additional typos in tselect.c comments. Fixes typo in tselect.c Updates H5Sset_extent_none() to set H5S_NULL
| * | Updates H5Sset_extent_none() to set H5S_NULLDana Robinson2020-07-281-0/+15
| |/ | | | | | | | | | | | | | | The API call used to set the internal H5S_NO_CLASS value which produced errors when such a dataspace was passed to many other API calls. Fixes HDFFV-11027
* | Add release notes for toolsAllen Byrne2020-07-201-2/+38
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* Fix for jira issue HDFFV-11080:vchoi2020-07-141-0/+14
| | | | | (1) Patch up the file pointer when reading attribute of variable length datatype (2) Test to verify the fix when doing multiple threads
* HDFFV-11116 Add option for install location of Fortran MOD filesAllen Byrne2020-07-092-3/+36
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* Lib files needed are now copied to a subdirectory in the java/testLarry Knox2020-07-021-0/+8
| | | | | | directory, and on Macs the loader path for libhdf5.xxxs.so is changed in the temporary copy of libhdf5_java.dylib. Fix for HDFFV-11063
* - added comment to explain a klugeBinh-Minh Ribler2020-06-291-1/+9
| | | | - added the associated entry to release notes
* Added note for HDFFV-10591.Binh-Minh Ribler2020-06-191-0/+12
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* OESS-65 fix packaging config filesAllen Byrne2020-05-081-0/+1
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* Remove old szip lineAllen Byrne2020-04-231-1/+0
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* OESS-65 add option to use AEC library in place of SZipAllen Byrne2020-04-223-0/+20
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* Trim trailing whitespaceQuincey Koziol2020-04-204-3068/+3068
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