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* 1 10 Merge #380 from develop (#439)Allen Byrne2021-03-051-0/+10
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop
* 1 10 Merges from develop (#424)Allen Byrne2021-03-041-1/+8
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file
* Hdf5 1 10 update license url part2 (#404)Larry Knox2021-03-011-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * close #195. (#196) * Update HDF5PluginMacros.cmake * Update HDF5PluginMacros.cmake * Modify temporary rpath for testing in java example scripts. (#230) * Fix undefined left shifting of negative numbers (#338) Undefined Bahavior Sanitizer errored here about left shifting negative numbers. * Update license url (#332) * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING file - src and test directories. * Update license url part2 (#333) * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING file - files not in src or test. * Update URL in source file Copyright headers for web. Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org> Co-authored-by: Sean McBride <sean@rogue-research.com>
* 1 10 Minor non-space formatting changes (#355)Allen Byrne2021-02-191-14/+15
| | | | | | | | | | | | | | | | | | | | | | | | | * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes
* 1 10 Merge #318 OSX changes from develop (#327)Allen Byrne2021-02-091-0/+7
| | | | | | | | | | | | | | | | | | | | | * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop
* 1 10 merges from develop (#320)Allen Byrne2021-02-081-0/+19
| | | | | | | | | | | | | | | | | | | * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop
* Warnings merge 110 (#300)Allen Byrne2021-02-041-0/+49
| | | | | | | | | | | | | * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * Merge dev warnings refactor from develop
* 1 10 merges from develop (#298)Allen Byrne2021-02-041-22/+54
| | | | | | | | | | | | | | | * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms
* Improve performance of multiple calls to H5Sget_select_elem_pointlist (#270) ↵Neil Fortner2021-01-221-1/+8
| | | | | | | | | | | (#276) * Cache the pointer to the next point to process after the last call to H5S__get_select_elem_pointlist. This allows the normal process of iterating over the points in batches to be much more efficient, as the library does not need to traverse the entirety of the preceding points every time the funciton is re-entered. * Update RELEASE.txt for point selection iteration performance fix.
* Stat st blocks fix 110 (#249)Larry Knox2021-01-111-1/+10
| | | | | | | | | | | | | | | | | | | | | | * close #195. (#196) * Update HDF5PluginMacros.cmake * Update HDF5PluginMacros.cmake * Modify temporary rpath for testing in java example scripts. (#230) * Fixes Autotools detection of the st_blocks field in stat (#246) * Fixes Autotools detection of the st_blocks field in stat The Autotools and CMake will now both correctly determine if the stat struct has the st_blocks field and set H5_HAVE_STAT_ST_BLOCKS appropriately. * Fixes a typo in configure.ac Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
* HDFFV-10865 - merge from dev, HDFArray perf fix. (#234)Allen Byrne2020-12-291-1/+10
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* OESS-98 Update plugin build option (#172)Allen Byrne2020-12-151-37/+56
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* hdf5 1 10 release text (#111)Allen Byrne2020-11-235-1192/+4166
| | | | | | | * Merge changes from 1.12/dev * Add chkmanifest * Update release text files, mostly whitespace
* hdf5 1 10 merge changes from dev (#107)Allen Byrne2020-11-201-3/+0
| | | | | * Merge changes from 1.12/dev * Add chkmanifest
* Add doxygen framework for CMake and autotools (#90)Allen Byrne2020-11-202-0/+12
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* Correct TARGET variable and CMake config file locationAllen Byrne2020-11-122-0/+19
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* HDFFV-10868 add release noteAllen Byrne2020-11-051-1/+8
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* OESS-98 - add option to build plugin library with hdf5Allen Byrne2020-10-231-5/+5
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* URL and options correctionsAllen Byrne2020-10-191-1/+1
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* Add missing file referenceAllen Byrne2020-10-191-0/+1
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* OESS-98 add CMake option to build plugins project within hdf5Allen Byrne2020-10-163-9/+132
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* Merge from developAllen Byrne2020-10-071-2/+2
| | | | | | github updates bin scripts updates parser changes remove obsolete file
* Correct entries related to --enable-build-mode and --enable-profiling inLarry Knox2020-10-031-3/+6
| | | | | INSTALL file, update COPYING file, also removing obsolete SZIP paragraph from it.
* Merge of clang-format changes from developAllen Byrne2020-09-301-1/+8
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* Update so numbers for hdf5 1.10.7 release.Larry Knox2020-08-301-653/+85
| | | | | Remove RELEASE.txt entries through 1.10.7 release. Update Platforms supported and tested.
* HDFFV-11018 Add Fortran H5F_LIBVER_V*_F definitionsScot Breitenfeld2020-08-261-0/+11
| | | | | | | | | | | | | | | | | | | Added ------ New Definitions: INTEGER :: H5F_LIBVER_ERROR_F INTEGER :: H5F_LIBVER_NBOUNDS_F INTEGER :: H5F_LIBVER_V18_F INTEGER :: H5F_LIBVER_V110_F New API: h5pget_libver_bounds_f(fapl_id, low, high, hdferr) Removed: call to C wrapper h5pset_libver_bounds_c in h5pset_libver_bounds_f Updated Release notes.
* Update version to 1.8.0-1 for CMake test failure.Larry Knox2020-08-241-1/+1
| | | | | | | | | | | if (H5_VERS_SUBRELEASE) set (HDF5_PACKAGE_VERSION_STRING "${HDF5_PACKAGE_VERSION}-${H5_VERS_SUBRELEASE}") else () if (${H5_VERS_SUBRELEASE} STREQUAL "") set (HDF5_PACKAGE_VERSION_STRING "${HDF5_PACKAGE_VERSION}") else () set (HDF5_PACKAGE_VERSION_STRING "${HDF5_PACKAGE_VERSION}-${H5_VERS_SUBRELEASE}") endif ()
* Brings the MPI datatype fixes from developDana Robinson2020-08-221-0/+6
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* Updated HDF5 1.10 support branch version number to 1.10.8-0Larry Knox2020-08-191-1/+1
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* Update RELEASE.txt to correct merge problems and text formatting.Larry Knox2020-08-191-23/+25
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* Update RELEASE.txt entry.Larry Knox2020-08-191-4/+7
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* Merge branch 'hdf5_1_10' of ↵Larry Knox2020-08-191-0/+7
|\ | | | | | | https://bitbucket.hdfgroup.org/scm/~lrknox/hdf5_lrk into hdf5_1_10
| * Updated bug fix for HDFFV-11101Binh-Minh Ribler2020-08-181-0/+7
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* | Remove entries for HDF5 1.10.6 release.Larry Knox2020-08-191-212/+84
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* Merge pull request #2772 in HDFFV/hdf5 from ↵Larry Knox2020-08-181-0/+11
|\ | | | | | | | | | | | | | | ~BMRIBLER/hdf5_bmr:hdf5_bmr_HDFFV-10933_110 to hdf5_1_10 * commit '538bdb35ae932a1445f32a04e8173f8805d404f8': Updated for HDFFV-10933 Fixed HDFFV-10933
| * Updated for HDFFV-10933Binh-Minh Ribler2020-08-161-0/+11
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* | Merge pull request #2753 in HDFFV/hdf5 from ~EPOURMAL/hdf5_ep:develop to develoElena Pourmal2020-08-171-2/+6
| | | | | | | | | | Code was already merged to hdf5_1_10. Merging the RELESE.txt entry for HDFFV-10436.
* | Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)Allen Byrne2020-08-151-1/+124
|\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'c638d93f3e660ce669a36e50a02473aac126953d': Fixes missing chunk_info entry in CMake files Even more normalization with develop More normalizations with develop Misc normalizations with develop Normalization of perform directory with develop Brings monotonic timer changes from develop Brings Mirror VFD to 1.10 from develop Brings splitter VFD from develop Brings file locking changes from develop
| * | Brings Mirror VFD to 1.10 from developDana Robinson2020-08-141-0/+6
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| * | Brings splitter VFD from developDana Robinson2020-08-141-0/+8
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| * | Brings file locking changes from developDana Robinson2020-08-141-1/+110
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* | HDFFV-9984 Add merge/prune h5repack options for ext linksAllen Byrne2020-08-151-1/+10
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* SpellingAllen Byrne2020-08-131-3/+3
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* HDFFV-11127 - force RTLD_LOCAL in dlopenAllen Byrne2020-08-121-0/+9
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* Brings HDFFV-11027 H5S_NO_CLASS fix to 1.10 from developDana Robinson2020-08-111-0/+16
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* Fixed typoBinh-Minh Ribler2020-08-041-1/+1
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* Fix HDFFV-11120 and HDFFV-11121 (CVE-2018-13870 and CVE-2018-13869)Binh-Minh Ribler2020-08-031-0/+11
| | | | | | | | | | | Description: When a buffer overflow occurred because a name length was corrupted and became very large, h5dump produced a segfault on one file and a memcpy parameter overlap on another file. This commit added checks that detect a read pass the end of the buffer to prevent these error conditions. Platforms tested: Linux/64 (jelly)
* Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)Allen Byrne2020-07-291-0/+14
|\ | | | | | | | | | | * commit '475120abfb493098e907fe40073260f48b35d15d': Supply the appropriate file pointer to H5T_patch_vlen_file() without H5F_VOL_OBJ from develop branch. Merge pull request #2693 in HDFFV/hdf5 from ~VCHOI/my_third_fork:bugfix/HDFFV-11080-heap-use-after-free-by-the-call to develop
| * Merge pull request #2693 in HDFFV/hdf5 from ↵Vailin Choi2020-07-211-0/+14
| | | | | | | | | | | | | | | | ~VCHOI/my_third_fork:bugfix/HDFFV-11080-heap-use-after-free-by-the-call to develop * commit '3023b34272cc6ada84aebfa7441a6a55afa3621c': Update MANIFEST. Add new test to Cmake. Fix for jira issue HDFFV-11080: (1) Patch up the file pointer when reading attribute of variable length datatype (2) Test to verify the fix when doing multiple threads
* | Merge from dev of tools changesAllen Byrne2020-07-221-0/+38
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