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* Change defaults of standard filters. (#2927)Allen Byrne2023-05-182-9/+16
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* Remove version specific examples from README_HPC. (#2613) (#2975)Larry Knox2023-05-171-14/+12
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* Fix CMake generator expression syntax (#2909)Allen Byrne2023-05-051-0/+13
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* remove obsolete SZIP find module (#2901)metadata_cache_macro_cleanupAllen Byrne2023-05-051-0/+2
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* Force lowercase Fortran module file names (#2891)Scot Breitenfeld2023-05-041-0/+6
| | | | | * fixed args in execvp for h5fuse * Force lowercase Fortran module file names for Cray compilers
* Add RELEASE.txt entry for API tests (#2889)jhendersonHDF2023-05-031-0/+42
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* Add Fortran Selection IO APIs (#2864)Scot Breitenfeld2023-05-011-2/+4
| | | new selection IO fortran APIs with tests
* Remove "the the" from comments and docs (#2865)Dana Robinson2023-05-012-3/+3
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* Implement selection I/O with type conversion (#2823)Neil Fortner2023-04-281-0/+10
| | | | | Initial implementation of selection I/O with type conversion. Allows Parallel collective I/O with type conversion, as long as selection I/O is enabled.
* Fix v1 object header gap bug in H5Ocopy (#2785)jhendersonHDF2023-04-261-0/+12
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* Add support for CMakePresets and fix example download (#2817)Allen Byrne2023-04-262-2/+105
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* Allow H5P_DEFAULT in H5Pget_vol_cap_flags and H5Pget_vol_id (#2807)jhendersonHDF2023-04-251-0/+6
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* Add release note for ROS3 VFD anonymous credential fix (#2801)jhendersonHDF2023-04-241-0/+13
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* Correct CMake option defaults - deprecate szip for libaec (#2778)Allen Byrne2023-04-232-64/+90
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* Added Fortran Async APIs (#2715)Scot Breitenfeld2023-04-211-1/+2
| | | H5A, H5D, H5ES, H5G, H5F, H5L and H5O async APIs were added.
* Add no subsets option to h5diff like h5dump #2688 (#2756)Allen Byrne2023-04-181-0/+7
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* Remove more author/date lines from RELEASE.txt (#2767)Dana Robinson2023-04-171-6/+0
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* Remove dates and initials from RELEASE.txt entries (#2746)Dana Robinson2023-04-161-19/+13
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* Fix memory leaks when processing OH cont messages (#2723)Dana Robinson2023-04-141-1/+14
| | | | | | | | | | | Malformed object header continuation messages can result in a too-small buffer being passed to the decode function, which could lead to reading past the end of the buffer. Additionally, errors in processing these malformed messages can lead to allocated memory not being cleaned up. This fix adds bounds checking and cleanup code to the object header continuation message processing. Fixes #2604
* Fix out of bounds in `hdf5/src/H5Fint.c:2859` (#2691)Kobrin Eli2023-04-131-0/+12
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* Fixed GH-2603, heap-buffer-overflow in H5O__linfo_decode (#2697)bmribler2023-04-131-2/+10
| | | | | | * Fixed GH-2603, heap-buffer-overflow in H5O__linfo_decode Verified with valgrind -v --tool=memcheck --leak-check=full h5dump POV-GH-2603 The several invalid reads shown originally are now gone.
* Add a RELEASE.txt note for GH #2605 (#2724)Dana Robinson2023-04-131-0/+10
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* Identify some options as advanced (#2717)Allen Byrne2023-04-131-0/+2
| | | | | | | * Identify some options as advanced Add explicit option statement to set default for CMake option * Revert advanced setting for file locks
* Fix for github issue #2599: (#2665)vchoi-hdfgroup2023-04-121-0/+15
| | | | | | | | | | | | | | | * Fix for github issue #2599: As indicated in the description, memory leak is detected when running "./h5dump pov". The problem is: when calling H5O__add_cont_msg() from H5O__chunk_deserialize(), memory is allocated for cont_msg_info->msgs. Eventually, when the library tries to load the continuation message via H5AC_protect() in H5O_protect(), error is encountered due to illegal info in the continuation message. Due to the error, H5O_protect() exits but the memory allocated for cont_msg_info->msgs is not freed. When we figure out how to handle fuzzed files that we didn't generate, a test needs to be added to run h5dump with the provided "pov" file. * Add message to release notes for the fix to github issue #2599.
* Clean up memory allocated when reading messages in H5Dlayout on error ↵glennsong092023-04-111-0/+10
| | | | (#2602) (#2687)
* Fix invalid memory access in H5O__ginfo_decode (#2663)mattjala2023-04-111-0/+8
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* Add buffer overrun checks to H5O__layout_decode and H5O__sdspace_decode (#2679)jhendersonHDF2023-04-111-0/+8
| | | Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
* Perlmutter was fixed (#2677)Scot Breitenfeld2023-04-111-20/+0
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* Fix improper include of build directory (#2422, #2621) (#2667)jhendersonHDF2023-04-111-0/+18
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* Fix a heap buffer overflow during H5D__compact_readvv (GitHub #2606) (#2664)jhendersonHDF2023-04-111-0/+19
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* Fix #2598 sanitize leak (#2660)Allen Byrne2023-04-071-1/+6
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* Minor fixes for CMake code and install docs (#2623)Allen Byrne2023-04-038-55/+60
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* CMake - Match Autotools behavior for library instrumentation (#2648)jhendersonHDF2023-04-011-0/+10
| | | Enable library instrumentation by default for parallel debug builds
* Fix a memory corruption issue in H5S__point_project_simple (#2626)jhendersonHDF2023-03-241-0/+14
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* Fix minor things noted when doing 1.10 merges (#2610)Dana Robinson2023-03-241-1/+1
| | | | * Duplicated HDF_RESOURCES_DIR from cmake_ext_mod merge * Typos in comments
* Bring new release_docs scheme from 1.14 (#2614)Dana Robinson2023-03-238-21897/+884
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* Subfiling VFD - fix issues with I/O concentrator selection strategies (#2571)jhendersonHDF2023-03-171-0/+20
| | | | | Fix multiple bugs with the SELECT_IOC_EVERY_NTH_RANK and SELECT_IOC_TOTAL I/O concentrator selection strategies and add a regression test for them
* Change libaec URL to actively maintained repo GH#2552 (#2559)Allen Byrne2023-03-151-3/+3
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* Update cross compile checks and files (#2497)Allen Byrne2023-03-021-0/+81
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* Check for overflow when calculating on-disk attribute data size (#2459)Egbert Eich2023-03-021-0/+13
| | | | | | | | | | | | | | | | | * Remove duplicate code Signed-off-by: Egbert Eich <eich@suse.com> * Add test case for CVE-2021-37501 Bogus sizes in this test case causes the on-disk data size calculation in H5O__attr_decode() to overflow so that the calculated size becomes 0. This causes the read to overflow and h5dump to segfault. This test case was crafted, the test file was not directly generated by HDF5. Test case from: https://github.com/ST4RF4LL/Something_Found/blob/main/HDF5_v1.13.0_h5dump_heap_overflow.md
* Add fetchcontent for compression libs and fix cmake config (#2487)Allen Byrne2023-02-262-5/+68
| | | | | | | | | | | | | * Add fetchcontent for compression libs and fix cmake config * MSDOS is a reserved define name * Add release note and update install doc for FetchContent * Add CI test for FetchContent * Use LINK_COMP_LIBS instead of STATIC_LIBRARY for depends * Use general link
* Subfiling VFD - add option to specify config file prefix (#2495)jhendersonHDF2023-02-261-0/+12
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* Fix issue with collective metadata writes of global heap data (#2480)jhendersonHDF2023-02-201-0/+15
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* CMake generated pkg-config file is incorrect #2259 (#2476)Allen Byrne2023-02-171-0/+13
| | | | | | | | | | | | | * CMake generated pkg-config file is incorrect #2259 * Fix fortran pc template * hdf5.pc is incorrect for debug builds #1546 * Correct pkg name and lib name * Fix typo * Fix missing space
* Port VOL connector Guide to doxygen (#2333)Allen Byrne2023-01-181-2/+6
| | | | | | | * Port VOL connector Guide to doxygen * Fix spelling * Updated VOL UG ref and added release note
* Adds RELEASE.txt notes and updates Doxygen (#2377) (#2379)Dana Robinson2022-12-291-0/+32
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* H5F_LIBVER_LATEST changes for move to 1.15 (#2288)Allen Byrne2022-12-211-1/+1
| | | | | | | | | | | | | | | * H5F_LIBVER_LATEST changes for move to 1.15 * Add new default api check * Format fixes * Fix default configure * fix lib version tests * Fix another version variable * Add 1.14 doc link
* Fix doxygen warnings and remove javadocs (#2324)Allen Byrne2022-12-201-0/+8
| | | | | * Fix doxygen warnings and remove javadocs * fix typo
* Disable hl tools by default (#2313)Allen Byrne2022-12-172-4/+15
| | | | | | | | | | | * Disable hl tools by default * identify the tools * Only GIF tools are depecated * Add new option * Update autotools
* Hdffv 11052 (#2303)vchoi-hdfgroup2022-12-151-0/+19
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * Fix for HDFFV-11052: h5debug fails on a corrupted file (h5_nrefs_POC) producing a core dump. When h5debug closes the corrupted file, the library calls H5F__dest() which performs all the closing operations for the file "f" (H5F_t *) but just keeping note of errors in "ret_value" all the way till the end of the routine. The user-provided corrupted file has an illegal file size causing failure when reading the image during the closing process. At the end of this routine it sets f->shared to NULL and then frees "f". This is done whether there is error or not in "ret_value". Due to the failure in reading the file earlier, the routine then returns error. The error return from H5F__dest() causes the file object "f" not being removed from the ID node table. When the library finally exits, it will try to close the file objects in the table. This causes assert failure when H5F_ID_EXISTS(f) or H5F_NREFS(f). Fix: a) H5F_dest(): free the f only when there is no error in "ret_value" at the end of the routine. b) H5VL__native_file_close(): if f->shared is NULL, free "f"; otherwise, perform closing on "f" as before. c) h5debug.c main(): track error return from H5Fclose(). * Committing clang-format changes * Add test and release note info for fix to HDFFV-11052 which is merged via PR#2291. * Committing clang-format changes * Add the test file to Cmake. Co-authored-by: vchoi <vchoi@jelly.ad.hdfgroup.org> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
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