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* Fix typos and grammar errors. (#476)H. Joe Lee2021-03-171-23/+16
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* Fix display of long double in tools (#469)Allen Byrne2021-03-171-0/+7
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 convert plugin option to FetchContent, add tests * Fixes for pkcfg files because of plugin option * OESS-98 fix tools test for plugins * Keep doxygen comments under 100 chars long - format hint * Whitespace * HDFFV-11144 - Reclassify CMake messages * HDFFV-11099/11100 added help text * Reworked switch statement to compare string instead * Fix typo * Update CDash mode * Correct name of threadsafe * Correct option name * Undo accidental commit * Note LLVM 10 to 11 format default changes * Update format plugin * Undo clang-format version 11 changes * One more correction * Update supported platforms * Revert whitespace changes * Correct whitespace * Changes from PR#3 * HDFFV-11213 added option to control gcc10 warnings diagnostics * HDFFV-11212 Use the new references correctly in JNI utility and tests * format source * Fix typo * Add new test file * HDFFV-11212 - update test and remove unused arg * Minor non-space formatting changes * Use H5I_INVALID_ID instead of "-1" * source formatting * add missing testfile, update jni function * Undo commit of debug code * remove mislocated file * Fix h5repack test for handling of fapls and id close * Update h5diff test files usage text * HDFFV-11212 add new ref tests for JNI export dataset * src format update * Remove blank line typo * src format typo * long double requires %Lg * Another long double foramt specifer S.B. %Lg * issue with t128bit test * Windows issue with h5dump and type. * Fix review issues * refactor function nesting and fix error checks * format fixes * Remove untested functions and javadoc quiet comments * Restore TRY block. * Change string append errors to memory exception * revert to H5_JNI_FATAL_ERROR - support functions need work * Add assertion error for h5util functions * remove duplicate function * format fix * Revert HD function error handling * Update copyright comments * GH #386 java folder copyright corrections * Whitespace * GH #359 implement and fix tools 1.6 API usage * remove excessive comments * Flip inits to correct ifdef section * rework ifdef to be simpler * format issue * Reformat ifdef inits * remove static attribute * format compliance * Update names * Revert because logic relies on float not being int * Changes noticed from creating merge of #412 * Double underscore change * Correct compiler version variable used * Remove header guard underscores * Whitespace cleanup * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * correct window os name * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * HDFFV-11113 long double in tools * HDFFV-11113 add note Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Correct syntax error. (#474)H. Joe Lee2021-03-171-1/+1
| | | a Fortran compile -> a Fortran compiler
* Use do-while trick to force H5Epush_ret() to require trailing semi (#380)Sean McBride2021-03-041-0/+10
| | | | | | | | | | | | | | | * Use do-while trick to force H5Epush_ret() to require trailing semi Fixed ensuing compiler errors. * Commit format changes from running clang-format with clang version 10.0.1. * Use do-while trick to force H5Epush_ret() to require trailing semi Fixed ensuing compiler errors. Updated RELEASE.txt. This change was made to allow clang-format to correctly format the code. Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
* Changes found during merge to 1.12 (#414)Allen Byrne2021-03-041-0/+8
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 convert plugin option to FetchContent, add tests * Fixes for pkcfg files because of plugin option * OESS-98 fix tools test for plugins * Keep doxygen comments under 100 chars long - format hint * Whitespace * HDFFV-11144 - Reclassify CMake messages * HDFFV-11099/11100 added help text * Reworked switch statement to compare string instead * Fix typo * Update CDash mode * Correct name of threadsafe * Correct option name * Undo accidental commit * Note LLVM 10 to 11 format default changes * Update format plugin * Undo clang-format version 11 changes * One more correction * Update supported platforms * Revert whitespace changes * Correct whitespace * Changes from PR#3 * HDFFV-11213 added option to control gcc10 warnings diagnostics * HDFFV-11212 Use the new references correctly in JNI utility and tests * format source * Fix typo * Add new test file * HDFFV-11212 - update test and remove unused arg * Minor non-space formatting changes * Use H5I_INVALID_ID instead of "-1" * source formatting * add missing testfile, update jni function * Undo commit of debug code * remove mislocated file * Fix h5repack test for handling of fapls and id close * Update h5diff test files usage text * HDFFV-11212 add new ref tests for JNI export dataset * src format update * Remove blank line typo * src format typo * long double requires %Lg * Another long double foramt specifer S.B. %Lg * issue with t128bit test * Windows issue with h5dump and type. * Fix review issues * refactor function nesting and fix error checks * format fixes * Remove untested functions and javadoc quiet comments * Restore TRY block. * Change string append errors to memory exception * revert to H5_JNI_FATAL_ERROR - support functions need work * Add assertion error for h5util functions * remove duplicate function * format fix * Revert HD function error handling * Update copyright comments * GH #386 java folder copyright corrections * Whitespace * GH #359 implement and fix tools 1.6 API usage * remove excessive comments * Flip inits to correct ifdef section * rework ifdef to be simpler * format issue * Reformat ifdef inits * remove static attribute * format compliance * Update names * Revert because logic relies on float not being int * Changes noticed from creating merge of #412 * Double underscore change * Correct compiler version variable used * Remove header guard underscores * Whitespace cleanup
* Primary change is HDFFV-11212 - new refs and JNI (#372)Allen Byrne2021-02-251-18/+27
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 convert plugin option to FetchContent, add tests * Fixes for pkcfg files because of plugin option * OESS-98 fix tools test for plugins * Keep doxygen comments under 100 chars long - format hint * Whitespace * HDFFV-11144 - Reclassify CMake messages * HDFFV-11099/11100 added help text * Reworked switch statement to compare string instead * Fix typo * Update CDash mode * Correct name of threadsafe * Correct option name * Undo accidental commit * Note LLVM 10 to 11 format default changes * Update format plugin * Undo clang-format version 11 changes * One more correction * Update supported platforms * Revert whitespace changes * Correct whitespace * Changes from PR#3 * HDFFV-11213 added option to control gcc10 warnings diagnostics * HDFFV-11212 Use the new references correctly in JNI utility and tests * format source * Fix typo * Add new test file * HDFFV-11212 - update test and remove unused arg * Minor non-space formatting changes * Use H5I_INVALID_ID instead of "-1" * source formatting * add missing testfile, update jni function * Undo commit of debug code * remove mislocated file * Fix h5repack test for handling of fapls and id close * Update h5diff test files usage text * HDFFV-11212 add new ref tests for JNI export dataset * src format update * Remove blank line typo * src format typo * long double requires %Lg * Another long double foramt specifer S.B. %Lg * issue with t128bit test * Windows issue with h5dump and type. * Fix review issues * refactor function nesting and fix error checks * format fixes * Remove untested functions and javadoc quiet comments * Restore TRY block. * Change string append errors to memory exception * revert to H5_JNI_FATAL_ERROR - support functions need work * Add assertion error for h5util functions * remove duplicate function * format fix * Revert HD function error handling * Update copyright comments
* Update license url part2 (#333)Larry Knox2021-02-171-1/+1
| | | | | | * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING file - files not in src or test.
* Fix for HDFFV-11109 - Copy MPI comm and info object into output FAPL from ↵jhendersonHDF2021-02-171-0/+9
| | | | | | | H5F_get_access_plist (#342) * Avoid freeing MPI_COMM_WORLD in H5_mpi_comm_free * Copy MPI Comm and Info to new FAPL in H5F_get_access_plist
* Add option to control gcc 10 warnings diagnostics (#321)Allen Byrne2021-02-081-0/+19
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 convert plugin option to FetchContent, add tests * Fixes for pkcfg files because of plugin option * OESS-98 fix tools test for plugins * Keep doxygen comments under 100 chars long - format hint * Whitespace * HDFFV-11144 - Reclassify CMake messages * HDFFV-11099/11100 added help text * Reworked switch statement to compare string instead * Fix typo * Update CDash mode * Correct name of threadsafe * Correct option name * Undo accidental commit * Note LLVM 10 to 11 format default changes * Update format plugin * Undo clang-format version 11 changes * One more correction * Update supported platforms * Revert whitespace changes * Correct whitespace * Changes from PR#3 * HDFFV-11213 added option to control gcc10 warnings diagnostics
* Remove prohibition against building Universal Binaries on macOS (#318)Sean2021-02-081-0/+7
| | | Fixes github issue #311.
* Update supported platforms (#303)Allen Byrne2021-02-031-6/+12
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 convert plugin option to FetchContent, add tests * Fixes for pkcfg files because of plugin option * OESS-98 fix tools test for plugins * Keep doxygen comments under 100 chars long - format hint * Whitespace * HDFFV-11144 - Reclassify CMake messages * HDFFV-11099/11100 added help text * Reworked switch statement to compare string instead * Fix typo * Update CDash mode * Correct name of threadsafe * Correct option name * Undo accidental commit * Note LLVM 10 to 11 format default changes * Update format plugin * Undo clang-format version 11 changes * One more correction * Update supported platforms * Revert whitespace changes * Correct whitespace
* Small fixes (#285)Allen Byrne2021-01-271-12/+26
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 convert plugin option to FetchContent, add tests * Fixes for pkcfg files because of plugin option * OESS-98 fix tools test for plugins * Keep doxygen comments under 100 chars long - format hint * Whitespace * HDFFV-11144 - Reclassify CMake messages * HDFFV-11099/11100 added help text * Reworked switch statement to compare string instead * Fix typo * Update CDash mode * Correct name of threadsafe * Correct option name * Undo accidental commit * Small changes plus merge of tools arg parse from 1.12
* Fix problems with vlens and refs inside compound using H5VLget_file_type() ↵hdf5-1_13_0-rc5Neil Fortner2021-01-221-0/+9
| | | | | | | | | | | | (#274) * Fixed problems with vlens and refs inside compound using H5VLget_file_type() * Fix date in RELEASE.txt * Add assertions * Move some manipulation of H5VL_object_t struct fields into the H5VL package.
* Improve performance of multiple calls to H5Sget_select_elem_pointlist (#270)Neil Fortner2021-01-201-0/+9
| | | | | | | | | * Cache the pointer to the next point to process after the last call to H5S__get_select_elem_pointlist. This allows the normal process of iterating over the points in batches to be much more efficient, as the library does not need to traverse the entirety of the preceding points every time the funciton is re-entered. * Update RELEASE.txt for point selection iteration performance fix.
* 11099 Add help text line (#259)Allen Byrne2021-01-151-0/+8
| | | | | | | | | | | | | | | * OESS-98 convert plugin option to FetchContent, add tests * Fixes for pkcfg files because of plugin option * OESS-98 fix tools test for plugins * Keep doxygen comments under 100 chars long - format hint * Whitespace * HDFFV-11144 - Reclassify CMake messages * HDFFV-11099/11100 added help text
* Removes lock/unlock callbacks from ros3 and hdfs VFDs (#258)Dana Robinson2021-01-141-14/+0
| | | | | | | | | | | | | | | | * Removes no-op callback stubs from read-only VFDs Also changes VFD registration to allow read-only VFDs with no write callback to be registered. * Adds a RELEASE.txt note for HDFFV-11205 For the read-only VFD registration change * Revert "Removes no-op callback stubs from read-only VFDs" This reverts commit a7a95497305d64d2de783fdb0e3186a532446a4a. * Removes lock callbacks from ros3 and hdfs VFDs
* Reclassify CMake messages - HDFFV-11144 (#253)Allen Byrne2021-01-131-1/+13
| | | | | | | | | | | | | * OESS-98 convert plugin option to FetchContent, add tests * Fixes for pkcfg files because of plugin option * OESS-98 fix tools test for plugins * Keep doxygen comments under 100 chars long - format hint * Whitespace * HDFFV-11144 - Reclassify CMake messages
* Allow read-only VFD registration (#257)Dana Robinson2021-01-131-0/+14
| | | | | | | | | | * Removes no-op callback stubs from read-only VFDs Also changes VFD registration to allow read-only VFDs with no write callback to be registered. * Adds a RELEASE.txt note for HDFFV-11205 For the read-only VFD registration change
* Fixes Autotools detection of the st_blocks field in stat (#246)Dana Robinson2021-01-081-1/+10
| | | | | | | | | * Fixes Autotools detection of the st_blocks field in stat The Autotools and CMake will now both correctly determine if the stat struct has the st_blocks field and set H5_HAVE_STAT_ST_BLOCKS appropriately. * Fixes a typo in configure.ac
* Adds h5delete tool (#187)Dana Robinson2020-12-161-0/+14
| | | | | | | | | * Adds h5delete tool * Fixed MANIFEST * Added RELEASE.txt note * Fix typo in RELEASE.txt
* OESS-98 convert plugin option to FetchContent, add tests (#155)Allen Byrne2020-12-161-17/+36
| | | | | | | | | | | * OESS-98 convert plugin option to FetchContent, add tests * Fixes for pkcfg files because of plugin option * Update other test machines * OESS-98 fix tools test for plugins * HDFFV-10865 performance improvement for java array
* Replace H5E_ATOM major error category with H5E_ID (#121)Dana Robinson2020-11-301-0/+20
| | | | | | | | | | * Renames H5I_ATOM to H5I_ID, among other related changes * Java has been updated. * Fortran is failing on my VM, even though I don't touch that. * Adds a RELEASE.txt note for H5E_ATOM to H5E_ID changes * Fixes typos in comments
* FreeBSD autotools changes (#142)Dana Robinson2020-11-301-0/+14
| | | | | | | | | | | | | | | | * Updates to allow autotools builds on recent FreeBSD * Switches the default C compiler to cc from gcc (this may need a version string check if we want to support FreeBSD 9 and earlier. FreeBSD 10 was released in 2014) * Makes the default C++ compiler c++ (no previous setting) * Both of these resolve to Clang on FreeBSD 10+ * Added a note about flang being unsuitable on FreeBSD (the port uses an ancient build of flang that lacks Fortran 2003 support) * Autotools only - CMake appears to use different CPP flags which cause compilation errors * Adds a RELEASE.txt note for new FreeBSD autotools changes
* Minor/solaris gcc fix (#126)Dana Robinson2020-11-251-0/+13
| | | | | | | * Adds gnu99 as the standard when building with gcc on Solaris * Adds a note to RELEASE.txt and improves comments For Solaris + gcc fix (HDFFV-11191)
* Adds a configure/CMake option to control -Werror behavior (#119)Dana Robinson2020-11-251-0/+22
| | | | | * Works in both Autotools and CMake * OFF by default * Reverts "always on" -Werror behavior released in 1.10.7
* Update release text files (#109)Allen Byrne2020-11-237-2448/+7656
| | | | | | | * Update release text files * spelling correction * Update list
* Set doxygen default to normally disabled.Allen Byrne2020-11-092-1/+2
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* Doxygen correct typosAllen Byrne2020-11-041-2/+2
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* Doxygen add new files and update docsAllen Byrne2020-11-032-1/+15
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* CMake: Add an option to opt-out static libgccMichel Zou2020-10-312-0/+8
| | | | | With sjlj exception model, statically link to libgcc/libstdc++ prevents exceptions to be caught from other dynamic libraries.
* CMake: Add an option to opt-out MSVC naming conventionMichel Zou2020-10-302-0/+8
| | | | | We might want to keep the default mingw import name, see: https://github.com/msys2/MINGW-packages/blob/master/mingw-w64-hdf5/hdf5-default-import-suffix.patch
* HDFFV-10868 - add noteAllen Byrne2020-10-281-0/+9
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* Correct SZ options for building pluginsAllen Byrne2020-10-211-5/+5
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* URL and options correctionsAllen Byrne2020-10-191-1/+1
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* Whitespace and url correctionAllen Byrne2020-10-191-1/+1
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* Correct entries related to --enable-build-mode and --enable-profiling inLarry Knox2020-10-031-4/+7
| | | | INSTALL file, and remove obsolete SZIP paragraph from COPYING file.
* More info for building plugins with libraryAllen Byrne2020-09-283-11/+125
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* OESS-98 add release note for optionAllen Byrne2020-09-271-3/+12
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* Merge pull request #2882 in HDFFV/hdf5 from ↵Allen Byrne2020-09-251-0/+10
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~BYRN/hdf5_adb:feature/cmakeV2-clang-format to develop * commit '571a5e9250ca69adb54ef956361a5cf77059f67c': Add h5ls test plugin format target Fix manifest Add code owners file Update actions - split push/pull-request commits Change to executable Change to based on LLVM format Fix comment formatting due to tabs conversion Disable formatting for file File changes to affect formatting CMake and script changes for clang-format
| * CMake and script changes for clang-formatAllen Byrne2020-09-041-0/+10
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* | Add release note for new H5Ssel_iter_reset functionJordan Henderson2020-09-181-0/+10
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* Adds RELEASE.txt note about HDFS VFD stubs being removedDana Robinson2020-08-271-0/+34
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* Merge pull request #2771 in HDFFV/hdf5 from ↵Binh-Minh Ribler2020-08-161-0/+10
|\ | | | | | | | | | | | | | | | | ~BMRIBLER/hdf5_bmr:hdf5_bmr_HDFFV-10933 to develop Fixed HDFFV-10933 * commit '16349c5fddce8a74644e18d01d7ea8186aaaa255': Fixed HDFFV-10933
| * Fixed HDFFV-10933Binh-Minh Ribler2020-08-141-0/+10
| | | | | | | | | | | | | | | | | | | | | | Description: Updated the original fix by Kent Y. in commit 200a77d8c3e51663c375aafffff607ae9b438f4e - used internal functions instead of public API - moved some code into the subroutine for a cleaner look. - added test to dsets.c Platforms tested: Linux/64 (jelly)
* | HDFFV-9984 Add options to merge/prune external links during repackAllen Byrne2020-08-141-0/+11
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* Merge pull request #2753 in HDFFV/hdf5 from ~EPOURMAL/hdf5_ep:develop to developElena Pourmal2020-08-141-2/+6
|\ | | | | | | | | | | | | * commit 'c6248cfb6975a6ecadf0259390247ce05dc13c4b': Addresseda Dana's comments from the pull request. Fixed several typos in the comments found by Larry during the review. The H5DSis_scale function was updated to return "not a dimension scale" (0) instead of failing (-1), when CLASS or DIMENSION_SCALE attributes are not written according to Dimension Scales Specification (HDFFV-10436).
| * The H5DSis_scale function was updated to return "not a dimension scale" (0)Elena2020-08-121-2/+6
| | | | | | | | | | instead of failing (-1), when CLASS or DIMENSION_SCALE attributes are not written according to Dimension Scales Specification (HDFFV-10436).
* | spellingAllen Byrne2020-08-131-1/+1
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* | HDFFV-11127 - force RTLD_LOCAL in dlopenAllen Byrne2020-08-121-3/+12
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* Renames BEST-EFFORT to BEST_EFFORT for file locking env varDana Robinson2020-08-061-3/+3
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