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* Merge pull request #1865 in HDFFV/hdf5 from ↵Vailin Choi2019-08-161-0/+17
| | | | | | | | ~VCHOI/my_third_fork:bugfix/HDFFV-10813-swmr-test-fails-on-jelly-with to develop * commit '538f743c145fbbfa7b1119693efd2ff61b34efae': Changes based on PR feedback. Fix for HDFFV-10813 H5Fset_metadata_read_retry_info() test fails on jelly with PGI/19.
* Use a STRING option for API versionAllen Byrne2019-08-122-13/+21
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* Add contents of HDF5 1.10.5 RELEASE.txt to HISTORY-1_10.txt file.Larry Knox2019-08-022-400/+712
| | | | | Remove 1.10.5 entries from current RELEASE.txt and update version numbers.
* Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)Allen Byrne2019-07-311-0/+16
|\ | | | | | | | | | | * commit '803ae1d1a87bb962a7d887a958bbd9ac8adf3da3': Changes based on PR review. Bring pull request #1772 from develop to 1.10. Fails file creation when non-default free-space info is set in fcpl and the library version high bound is less than v110 because free-space info message is introduced in library release v110.
| * Bring pull request #1772 from develop to 1.10.Vailin Choi2019-07-221-0/+16
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Fails file creation when non-default free-space info is set in fcpl and the library version high bound is less than v110 because free-space info message is introduced in library release v110. Merge pull request #1772 in HDFFV/hdf5 from ~VCHOI/my_third_fork:bugfix/HDFFV-10808-h5pset_file_space_strategy-succeeds to develop * commit '3768566139df18928aa29ece0eff3010b224633b': Add release notes. Correct hid_t error value to H5I_INVALID_HID in tests related to libver_bounds. Fix for HDFFV-10808 H5Pset_file_space_strategy succeeds when using H5Pset_libver_bounds v18,v18. Fails file creation when non-default free-space info is set in fcpl and the library version high bound is less than v110 because free-space info message is introduced in library release v110. Conflicts: test/tfile.c
* | HDFFV-10845, 10529 and CMake changes from developAllen Byrne2019-07-241-2/+23
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* | Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)Allen Byrne2019-07-231-0/+13
|\ \ | |/ | | | | | | | | * commit '308393a020bd7a812c231eee8130c9365d192e18': Change "bad" hid_t_value to H5I_INVALID_HID in test_libver_bounds_copy() test. Bring pull request #1729 from develop to 1.10: Fix for HDFFV-10800 H5Ocopy failure: The value for the H5F_LIBVER_V18 index in H5O_fill_ver_bounds[], the format version bounds array for fill value message, should be version 3 not 2.
| * Bring pull request #1729 from develop to 1.10:Vailin Choi2019-07-171-0/+13
| | | | | | | | | | | | Fix for HDFFV-10800 H5Ocopy failure: The value for the H5F_LIBVER_V18 index in H5O_fill_ver_bounds[], the format version bounds array for fill value message, should be version 3 not 2.
* | Merge from develop, mostly HDFFV-10845Allen Byrne2019-07-121-0/+9
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* Fix CMake module include and note textAllen Byrne2019-07-101-4/+4
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* HDFFV-10581 Correct PDB files and debug naming.Allen Byrne2019-07-091-0/+9
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* Squash commit of options to build tools and testsDhvanil Popat2019-06-251-0/+12
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* Correct sentence structure.Allen Byrne2019-06-211-6/+6
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* HDFFV-10805 Merge SHARED ONLY option from developAllen Byrne2019-06-201-0/+18
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* Fix Java JUnit-TestH5P failure on 32-bit archJordan Henderson2019-04-301-0/+4
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* Added new C++ wrappers - HDFFV-10622Binh-Minh Ribler2019-04-241-0/+6
| | | | | | | | | | | | | | | | Description: Added wrappers for H5Pset/get_create_intermediate_group: // Specifies in property list whether to create missing // intermediate groups void setCreateIntermediateGroup(bool crt_intmd_group) const; // Determines whether property is set to enable creating missing // intermediate groups bool getCreateIntermediateGroup() const; Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1011test)
* Snapshot version 1.10 release 6 (snap0)\nUpdate version to 1.10.6-snap1)hdftest2019-04-011-1/+1
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* Correct Examples for packagingAllen Byrne2019-03-281-0/+2
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* Fix issue with direct chunk write not updating the "last chunk" indexNeil Fortner2019-03-191-0/+12
| | | | | cache. Fix issues involving datasets being "no allocated" when they contain cached raw data.
* Revised the entry of bug fix for HDFFV-10705.Songyu Lu2019-03-081-3/+5
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* Minor change: revised the note from the previous commit about HDFFV-10705.Songyu Lu2019-03-071-1/+2
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* HDFFV-10705: added a release note.Songyu Lu2019-03-041-0/+7
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* Correct CMake examples for a binary installAllen Byrne2019-02-271-6/+16
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* Update so version numbers.Larry Knox2019-02-204-2/+231
| | | | fix 2 typos.
* Update version on hdf5_1_10 branch to 1.10.6-snap0.Larry Knox2019-02-181-1/+1
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* Merge pull request #1560 in HDFFV/hdf5 from hdf5-1-10-documentation-only to ↵Richard Warren2019-02-181-1/+19
| | | | | | | | hdf5_1_10_5 * commit '5dd2fda18fbbeab95ba44200e48c8202dae65206': Modify RELEASE.txt in response to PR comments Updated RELEASE.txt with updates regarding HDFFV-10540
* Update HISTORY-1_10.txt and RELEASE.txt files.Larry Knox2019-02-182-444/+478
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* Code improvementBinh-Minh Ribler2019-02-161-3/+3
| | | | | | | Description: Removed dead code and accidentally leftover code Platforms tested: Linux/64 (jelly) - very minor
* Adding a C++ wrapperBinh-Minh Ribler2019-02-151-1/+7
| | | | | | | | | | | | | Description: - Added a wrapper for H5Ovisit2 to class H5Object // Recursively visit elements reachable from this object. void visit(H5_index_t idx_type, H5_iter_order_t order, visit_operator_t user_op, void *op_data, unsigned int fields); - Fixed various typos in documentation - Removed a pair of [] in a delete statement for a non-array pointer. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1011test)
* Merge pull request #1543 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to ↵Allen Byrne2019-02-141-0/+10
|\ | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit 'f4f8be19125002764715f6cd25372477c729f809': Script changes from develop Added TRILABS-111 note Add HDFFV-10628 known problem TRILAB-111 Update MPI CMake
| * Added TRILABS-111 noteAllen Byrne2019-02-141-0/+7
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| * Add HDFFV-10628 known problemAllen Byrne2019-02-141-0/+3
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* | Re-write of Java JNI error handlingJordan Henderson2019-02-141-0/+4
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* Add RELEASE.txt note for collective metadata read fixesJordan Henderson2019-02-121-0/+16
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* Fix test issue in testpar/t_dset.c with MPI-2 implementationsJordan Henderson2019-02-071-0/+5
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* Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)Allen Byrne2019-02-071-0/+10
|\ | | | | | | | | * commit 'e594811caf10c66c12cad7c554854deea262d9cb': Merge pull request #1522 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to develop
| * Merge pull request #1522 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to ↵Vailin Choi2019-02-061-0/+10
| | | | | | | | | | | | | | | | | | | | | | | | | | develop * commit '7f5741825db0737db5ac46c43009681508a73002': Add release notes information. Modification based on feedback from pull request. Modification based on feedback from pull request. There is performance issue when closing an object. The slow down is due to the search of the "tag_list" to find out the "corked" status of an object. The fix: (1) Add a counter "num_objs_corked" in the cache structure to track the number of "corked" objects. (2) Skip the search of "tag_list" if the counter is zero i.e. no "corked" objects. Conflicts: release_docs/RELEASE.txt
* | HDFFV-10697 Disable compression option if source unavailableAllen Byrne2019-02-051-0/+7
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* Added a line for the CMake pread/write option to INSTALL_CMake.txt.Dana Robinson2019-02-041-0/+1
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* Merge of changes from develop for 1.10.5.Dana Robinson2019-02-041-0/+39
| | | | Added RELEASE.txt entries for new features.
* Renamed data fileBinh-Minh Ribler2019-02-011-2/+2
| | | | | | | | | Description: Renamed data file with long name to a shorter name. Revised an entry in RELEASE.txt Platforms tested: Linux/64 (jelly) Darwin (osx1010test)
* Merge branch 'hdf5_1_10' of ↵Binh-Minh Ribler2019-01-311-11/+52
|\ | | | | | | https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_1_10_bmr into hdf5_1_10
| * Add RELEASE.txt note for unknown message fix (pull request 1448)Neil Fortner2019-01-291-0/+6
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| * Merge pull request #1493 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to ↵Allen Byrne2019-01-241-0/+15
| |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit '217d57d30d2d62f987affcc8859df982dc86d2b3': CMake fix Java html fix and cmake update HDFFV-10686 add note HDFFV-10686 revert H5Oget_info1 to H5Oget_info(H5Ovisit)
| | * HDFFV-10686 add noteAllen Byrne2019-01-241-0/+15
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| * | Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)Jordan Henderson2019-01-241-11/+18
| |\ \ | | |/ | | | | | | | | | | | | | | | | | | * commit 'd26963b180a052ac063907f95596a7ecad08ef8e': Add clear objects to ignore tests Add new clear tests to ignore list Cleanup variable names HDFFV-10685 Always set version flags on OSX
| | * HDFFV-10685 Always set version flags on OSXAllen Byrne2019-01-221-11/+18
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| * | Add RELEASE.txt note for parallel filters test fixJordan Henderson2019-01-221-0/+7
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| * Fix CMake policy 54 warningsAllen Byrne2019-01-181-0/+6
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* | Fixed HDFFV-10586, HDFFV-10588, and HDFFV-10684Binh-Minh Ribler2019-01-311-3/+31
|/ | | | | | | | | | | | | | | | | | | | | | | | | | Description: HDFFV-10586 CVE-2018-17434 Divide by zero in h5repack_filters Added a check for zero value HDFFV-10588 CVE-2018-17437 Memory leak in H5O_dtype_decode_helper This is actually an Invalid read issue. It was found that the attribute name length in an attribute message was corrupted, which caused the buffer pointer to be advanced too far and later caused an invalid read. Added a check to detect attribute name and its length mismatch. The fix does not cover all cases, but it'll reduce the chance of this issue when a name length is corrupted or the attribute name is corrupted. HDFFV-10684 H5Ewalk does not stop until all errors in the stack are visited The test for HDFFV-10588 has revealed a bug in H5Ewalk. H5Ewalk did not stop midway even when the call back function returns H5_ITER_STOP. This is because a condition is missing from the for loops in H5E__walk causing the callback functions unable to stop until all the errors in the stack are iterated. Quincey advised on the final fix. In this fix, "status" is switched to "ret_value" and HGOTO_ERROR to HERROR, and the for loops won't continue when "ret_value" is not 0. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1011test)
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